Array 1 447373-446985 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHMB01000002.1 Vibrio sp. 11986-1-5 NODE_2_length_453965_cov_20.2951, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 447372 28 100.0 32 ............................ ATTTGACGTCCTTTTTTTGGGGGCCGATGATT 447312 28 100.0 32 ............................ TGTCTTGGGGTCATGGGCTTCCAACGTCAAAA 447252 28 100.0 32 ............................ CTCACGAAGCGCAGGAACGACTTCGAACCAAA 447192 28 100.0 32 ............................ TGTTTTGGGGTCGTGGGCTTCCAACGTCAAAA 447132 28 100.0 32 ............................ GTGGCTATCGGCTTCGAAGTCGATATTCACGG 447072 28 100.0 32 ............................ TAGAGCGACCGCTTCGTTAGTAAGACCTTTGA 447012 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGGCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATCAATAAAGAAGGTGAGCAGCGCTATAAAGAGAAGATGCTGAGCCAGAGTATTAAAGCACCTTATCTTGACTTACAGAGTGGCTCTACAGGGCAAAAGTATCGTAAATTCTTTGAGTTTGGTGAAATGCGGTCAATACCAATATCTGGAAAGTTTGATTCCTATGGATTAAGTCAGTCAGCTACCGTTCCTTGGTTTTAATGTTGTCGAGGGAAGCTTTCGTTAAATTTATTTTTACTACGTAAAAAAGGCATTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTAAATACAATGAGTTACAATAGGCGCTTTTTAATAAGGTAAAAATGCAATTTTTATCCTAACTAACTGTTGTAACTTATTTTTATTGATTTATTCTATA # Right flank : AACAGAACCACCGCCCGAACTAAGCCTCTCCAGTGAAGCCAGCAAAGAAAAGTAACTTCACCAGCAGAGGTAAAAATAACAATGGGGAGCATCACGCTCCCCATTCTTTTTTGCTTCTATACACCAGTTTGAAGGTATATGTTATCGATAAAAAAACACTCTTGACCTTGGTAGAGCCAACTTCATATAAGACTCGAATAGTATGACCATTCACAGACTCCAATCAGAGATAAAAAGGCTGCCTGCTTAAGTAAAGCATCATACTTTTTCCCAAAAAAATCCCGGTAAGTCATCATTTAATACAAACCATTTTTTGAATATCTACTAAGTGTTGTACTCGATTCGTCGTGGTGAAAGCGTTACAACATCACAAATAGCAAGCAGATTGGATCTTTCTGATAGTTGGGCAAGCACACTTCTGAAAGAATTAAACCGCAAATTGTTTCTTAGTCGGCGAGGCTGTACTCGGCAGTGCGGAGGTGTTGAGTTCGTGTATTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 611336-611932 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHMB01000001.1 Vibrio sp. 11986-1-5 NODE_1_length_613956_cov_20.8451, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 611336 28 100.0 32 ............................ TATAGATGATATACCGCTGTAGGTTTATCCAA 611396 28 100.0 32 ............................ ACAATTGCCCTTGCTTCATTAATGACGCTTTC 611456 28 100.0 32 ............................ TGATGATTACATCCCTAAGCTTTACGCCACAT 611516 28 100.0 32 ............................ AATTGATAATTCCCGATATGGTCAGGGTTTGT 611576 28 100.0 32 ............................ TTAATGCTTGCGAAACCACAGGTAAGAAACCA 611636 28 100.0 32 ............................ TCCAGAAGCTGTGATTTCCTTGTTCCACTTTC 611696 28 100.0 32 ............................ TGTTAATACAGGGAGTAAAAATCCTGCCATGG 611756 28 100.0 32 ............................ ATCAAAGAAAAGGAAGGCAAACAACGCCTTGT 611816 25 75.0 0 ................A.C....TA--- - AACA [611833] Deletion [611841] 611845 28 100.0 32 ............................ AGCACTTGGGCTGGTTGCGGATACGTCAATAA 611905 28 78.6 0 ....................T..CATTG | ========== ====== ====== ====== ============================ ================================ ================== 11 28 95.8 29 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTCAGCTTTTTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGAGATATGCAGCAAAAAGCGGCACGATGGGCTGCTAAATCGGGTCAATCGCTTGCAGAATGCTTAGCCGTACTTGAACAAAGTAAGCCCACAGAACTGTGCCGTTTGCCGTTTATTTACCTACATAGCCAGCAAACTAAGCAGCGTTCACCCGATAAAAACAGCAAGTTTCCGCTGTTTATTGAGATGCAGCCGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTAAGTAGCAAAGCGAATGGACAATCAGCATTGGCTACCGTGCCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTAAATACAATAAGTTACAACTGGTGGTTTTTGACAAGGTAAAAAGATGATTTTTATCCTAACTGACTGTTGTAACTTATTTTTATTGATTTATTCTATT # Right flank : GTTACTGGGAAAGTTGTCATAATTATTTATTTTTTGATATGCAATAGGTTATTGATAAGTGTCGATTCTTTATTACATTAATCAATGTTACGTTCGGTATAAGGTTGGCTAAAGGGTATAAATCCTCACCTTTGGTTGTTAATTTAGCGAATGGAACTATGGAATGCGAAGACAAATAGAGAAAAGTTTGCTGGATGATTTGCGAGCAGAGCTAAGCAGCAAACCTAGCAAAGAGTGGCGAACATACAAGTGTACGCTTGTTACCCCTATGTACGGTGGCGGGGTAAAGGCGGGCGAAGTCGATAAAGACATGCCGATTCGAGCTAGCTCAATTCGTGGGCAATTACGTTTTTGGTGGCGCATTGCTTGTGGGCCGTTTAGTAGTCCAAAAGAGATGTTTGATAGAGAGACAGAGATTTGGGGTGGGATTGGCGATAAGGCAGCTGTAGCGAGTCAGGTGGAGATTAGAGTAAAGCCACTTGATCTAGGTAACTATTCAG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1078-1585 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHMB01000018.1 Vibrio sp. 11986-1-5 NODE_18_length_8222_cov_18.9984, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1078 28 100.0 32 ............................ TTGCCGCTTTAAGCGCACAGCAAACGTTCTAC 1138 28 100.0 32 ............................ CGCAAGCAGTGGATGCCTGACGAGCTTGAAGA 1198 28 100.0 32 ............................ TGTTAGGGACTGCTGGAGGCAGAAGCAAAGAA 1258 28 100.0 32 ............................ ATTTGAGACGGGCCAGAACGACTGTGCCCTTT 1318 28 100.0 32 ............................ GTACTTGCGATAAACAGTTTGTCAACGTTCGT 1378 28 100.0 32 ............................ TAAGAAAGAAATGGATGGGATAGAGAAAGGCT 1438 28 96.4 32 ............G............... AGACAGGTTAAACATACCGTCATGGTCCGACA 1498 28 100.0 32 ............................ TATCTCGCCAAATATTTTGCCGAGCGCTATAT 1558 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGTCCGGCTTTGCTCTGATAAATTGTGTGCGTAAAAGGTTCAATTGTCGCTGAACGGCCTCTTCCTTTGGTGTTGTTTGCCCATTGATTCCGCAGGCTAATTCGCTTCAACCTGTTTGGGATTTTACCGGCAACAATGATTGCTGAAAGTAGGCAAGTTTATCATTTTGAGTTAAAGTGGTTTGAACCAATAAGCGTTGAAAAAGTTCAATTTAATCAATAAGTAATAAAGCATAACAAACACTTCAAGAGGGACTTCCAACGCGCAGCATTTTCATTATGCGTTGATTTCGGTGGTTTCAGTGTTGTGCAGAAACTTGGTAGTAGCGTTGTCAGCCCCTTAAGTGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGGATTTTAACTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTATTTTTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : ATATTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGTAGCATTTTCATTATGCGTTGATTTTATTAGTTTTTAGTGCAATGCGGTAAGTTAGTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTAACTAGCCGCATTAGTTTGGAGATTATTTTGAAACAAGTTGAACAAATTATAGAACTTTTAAATGACCAGTCATTCCCACAAGTTGTTCTACTTGATGGGGCTTGGGGAAGTGGTAAAACTCATTTTATTAATCATCAATTGATAGATAAAATTAAAGAGAGTTTCAATCAAAACATATTATTTTTTTCTTTGTATGGCATTTCAAGTATAGATGATTTTAGAGATAAAATAATTTCGCTCTCTATTACAGAACAAGAAGAAGCATCTGTGATCGCAAAATACTTCTCTAAGGTTATCGATGGTGCAGCTATCAACATGGGAGAAAGAGGGGTTGGGGCTGTTATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //