Array 1 5393-4042 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKKMT010000029.1 Erwinia aphidicola isolate Bi13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================================================= ================== 5392 28 100.0 32 ............................ ATTGAGGCCGCCGACCCCAGAATAATCCGCCC 5332 28 100.0 32 ............................ CTCAGATATCTACAGCGCCATAGTTTCAAGCG 5272 28 100.0 32 ............................ ATAGCATGGAGCGCAGTTCGATAGTTCGGAGC 5212 28 100.0 32 ............................ GCTCTTCTGCGCCAGTGGCAGCCAATCTGGAT 5152 28 100.0 32 ............................ ATAGCATGGAGCGCAGTTCGATAGTTCGGAGC 5092 28 100.0 32 ............................ GCTCTTCTGCGCCAGTGGCAGCCAATCTGGAT 5032 28 100.0 32 ............................ ATAGCATGGAGCGCAGTTCGATAGTTCGGAGC 4972 28 100.0 32 ............................ GCTCTTCTGCGCCAGTGGCAGCCAATCTGGAT 4912 28 100.0 32 ............................ CATACTCTGAACAGCGTGCTGTTTATGAATTG 4852 28 100.0 32 ............................ TGCTTAAATACCTTGACGCGGCTAACTGGGAG 4792 28 100.0 32 ............................ TTTCGGGAAAACGGCAATTACAGCGTGCTGAA 4732 28 100.0 32 ............................ CTGGGATGTGACGGGGCTGGAATCGTAAACGC 4672 28 100.0 32 ............................ TTCTGCGACGGCGAATACTCACAGAAACATCA 4612 28 100.0 32 ............................ GTTCTGGCGGCTGATAACGGCGATTGTGATTA 4552 28 100.0 32 ............................ GGGCAGCGCGGCGTAATGCTCTACTACCACCG 4492 28 100.0 32 ............................ ACAGGGCGCGGGCGATATTCTCGACAGAGTCA 4432 28 100.0 32 ............................ TGAATGAGCGTCAGATCGCATTCATCGTAGCC 4372 28 100.0 32 ............................ ATTCTGCCGACTACGTCGTAACCTTCAGGTAA 4312 28 92.9 167 ...............A....T....... CAGGCAGCGGCGGATAGGTTTGTCGCGCAGGCAAAGGCTCGTGTGTAGCATATTCTGCATAAAAAAATTTACCCACTATCACGTAGGCTGCTTTGAGTTCACTCCAATTTACGACTCCTTAGCCCAGTGATAGTGGCTTTGACGCAAGATGCTGGCATGACTAAACA 4117 28 89.3 19 A..........AG............... ATTCCGCTGGAAAGTTCTC Deletion [4071] 4070 28 78.6 0 A..T.......CG....T......A... | T [4047] ========== ====== ====== ====== ============================ ======================================================================================================================================================================= ================== 21 28 98.1 38 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACCGACCTGAATGCGTTGCAGCAGAGCGGCTGGCTGCAAGGACTGCGGGATTATATCGTCTGTGCTGAGATTGCTGCAGTACCGCAGGAAGTTTGCTGGCGAGTGGTTAAACGTGTGCAGGTTAAAAGCAGTAGCGAACGCTTGCTCCGTCGATCCGTCCGTAAGGGATGGCTGACTGAAGCGGAAGCACAGCAGCGTAGTAGCCAGCTTAACGAACAGCGCAGTGATTTACCCTATGTGCTGATCAGGAGTGGCTCTAACGGTAACGCTTACCCGCTATTTATTGAGCATGGTCCGATTAGGTCATCGGCTGCTGAAGGCAGTTTTAATTCGTATGGCTTGAGTGCAACGGCGACCATTCCTTGGTTCTGACCCTTTTTTTGCCGCTAGTGCTAACTTGTTGATTTTATGGGGTGCTAACGGCAGGTTTTAAATAGGGTTTTTAGATTGAAAGTGGATGATCTCTTTGTTTAAGCAGATATTTTTGCGAGTTTCTAACA # Right flank : TTCATGGATATAGCGGGATTGGAAGCAACTTTAAAAGTGCACTTTCAGCCTGAAATTTTTCGGGTAGCAAGCCGGTTTGCGTTTTCACCGTCGAAAGTGGGGGCAAGGTATGCCTCGCCTTGTGTGATAGCCCAAAAGGGTTGGGCATGCCCAACCCCTACGTAAATGCGGTTTTTTGCATTAATTGCGAGATACCTTACAGTCGATGGTGAGTCGCACAGCTGAGCGAGCAATCAAATTAGCTTCGTGGTGTTCTTCTTTTATATTTTCATCCATTCCTCTGGAAAAGAAATTAACGAAAAGGAAGGTAATCATGAAACGGCTCTTGATGCTACTGGCTGCCACACTGCTGCTGTTGACGATAGTAAGCCTGTTATCAAGCGATGACCGCAATGAGAACAACATCCCACCCCATAAGTTATCAAAATCATCTGATAAATAAGCTGAAATTATTTCCACAGGCTCTGATGGGAGATGACTGTGCGGGAGATATGCGGTTT # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.66, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 15109-13941 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKKMT010000029.1 Erwinia aphidicola isolate Bi13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15108 28 100.0 32 ............................ GTTGATGCCGACAGCAAAGAAGCCCTGTTGAA 15048 28 100.0 32 ............................ TCAAAGAGTCGAAGCGTATTAACTGGGTATAT 14988 28 100.0 32 ............................ TGATTTCCAAGTGGCAGGCTGGCGCTGATGTA 14928 28 100.0 32 ............................ TGGCTGGAAGCTTGTCAGCGATGGGGAGCGCG 14868 28 100.0 32 ............................ AATGCGCTGCACCTGCTCGAAGGGAAAGTGGC 14808 28 96.4 32 ..............T............. GCGTGCACGGAGTAGGGCATCTGCTGCCCGGT 14748 28 100.0 32 ............................ TCTGAAGCAGCCTGGCGCAGAGCGTGTTTACG 14688 28 100.0 32 ............................ ATGGATGCATACGGCACCATCCCCGCATGGTT 14628 28 100.0 32 ............................ TCATCCAGCGCAGGGTTGTCTGCTGGGACGCC 14568 28 100.0 32 ............................ GAACTCGACGAGCGATGTCGCTGACGGATGCG 14508 28 100.0 32 ............................ GTAGTAAGGATCAGCTCGTCAGTCGTGAACCC 14448 28 100.0 32 ............................ CTGAGGAGCTTCTCAAGGCGGCTAATGTCACT 14388 28 100.0 32 ............................ ACAACAAAACGCCCGAGGGCGGACGGAACAGC 14328 28 100.0 32 ............................ ATCAGGCTGCTGTACACAAACATTTTCAGCTC 14268 28 100.0 32 ............................ AGAATGCGGGAGATGTTCAAAATATGGCTTAT 14208 28 100.0 32 ............................ TCAAGCATCTCAATCGATAGCTGCACCTGCGT 14148 28 100.0 32 ............................ ATAGGCTTCATGCAGTGGCATCATCGCAAGCC 14088 28 100.0 32 ............................ CGTTGCAGGTATTCCACGCGCGACAGCAGCGG 14028 28 100.0 32 ............................ AGCGGGCCCGAGCATTGCAGCTCGCGCAACTC 13968 28 96.4 0 ...........................C | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTGAGGCAGCATCTGGCCCGGCTGGGCAGAAAGTCGCTGTCGTTCTCAAAATCGGTGGAACTACATGACAAAGTTATCGGACACTATCTGACGATAAATCATTACCAATAAATTGGAGTCATTACCGGCGGTTCTTTCTCGTCGCTGTACG # Right flank : ACTTCATGCTTAAGCCCATGATTCAGCAGCGAACAAGCTCATTATAAAGCTTCGATCACAAAACCAGAGGTGTACTCTTATCAGGCAGGAAAAGTTGTGACCTACGGATTAGAAGTCCGTAGAATTAATAAAGAAAGCCCATACGGCACCTATATCCCCCGGGAGAATTCATGGAATTGATTAAACCCTCCGATCTGAAAACTATTCTGCATTCAAAACGTAGCAATATTTACTATCTGCAATATTGCCGGGTGCTGGTTAATGGCGGCCGCGTCGAATACGTTACTGATGAAGGCAAGCAGTCGCTGTACTGGAATATCCCAATTGCCAATACTACGGTGGTAATGTTGGGGACCGGGACATCAGTCACACAGGCTGCAATGCGTGAATTTGCCCGCGCTGGCGTATTAGTTGGCTTCTGCGGCGGTGGCGGCACGCCTCTGTATGCGGCAAACGAGGTCGAAGTTGACGTCTCCTGGTTAAATTCGCAAAGTGAGTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1976-1588 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKKMT010000033.1 Erwinia aphidicola isolate Bi13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1975 28 100.0 32 ............................ ATACTGGTCGAGCTTGTCGTTACGTCGCACCT 1915 28 100.0 32 ............................ ATGGTGTCCGTGTCGTCGAAATCAACGACGGC 1855 28 100.0 32 ............................ AAAGGGGAAGAAGCGATGAGCATACGCGAGCT 1795 28 100.0 32 ............................ CTAGCCGTCAGGCCCGAAACCCGCCTGCGGGG 1735 28 96.4 32 ..............T............. TGCCTGCGCCAGGCGTATGACGCAGAGGTAGA 1675 28 100.0 32 ............................ ATGCGGATCAGCAAAACGGCTTGAGCGTTAGG 1615 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGAGCAGGCAGCTTAGAAA # Left flank : CTCGCACCAGCTCAGGCACGCTTCCAGCTCGGCTACCATCACCGCGTTGTAGGCATTGCTGGCGGCGGGGCGGTTAAGCGTCAGGCGCGCCACGTGGGCAATCGGGCGGTCGCAGCGCACCAGCTGCGTGTTTGGTTGTTGGCTATTCATCATGGCATACCGTGACTGTCTGAGGGCGAAGAGTGTAGCTTTATGCCTATCCATTTTTTTAGCAAGCTTACGACGCGCGAGTTCGTGAGGTTAAAGTTTTAAAGCAAAAGATCCTTCTGCTTACGAGGGTAGGGTCGAGGCATGCCTCGACCTGGTGTTTAGAGGCTTATCTCATCCACTGTCACTCTTAATGTTCTGGGCATTATTGAAAACCGCACGACCCACTTTTTTGTCACCTCGGTAACTTTTTGATTTTAAACGATCTAATCGAACAGCTTTAAAAAAGGGTTTTTTACCAGGAGTGCAGCAATTGAATAATGTTTATAACGAGTTAGAGTAGTTTGCCAACC # Right flank : ATCATGCACGTGAATTTTCAGCTGTGCAGGGGGTATCAACTGCTGGATGAAACGTTGTCAAAGTATCCCCTTCACACCAGTAATCATTAAATAATGCAATTGCATTAATTTAACCCGCGCCGTATAATTTGTTCAGAAGTTAATCAGATTTTTAAGGTGAGAAATATGAGTGCTAACGCGCGTCCCGATACTGCTCTGACTGTCGATTCAAAAGTGACGGCCCGCTGTCAAACGACAATACCAGCACCGGTACGTGAAGCGCTGAAGCTTCGGCCGGGCAAAGACCATATTCAGTATGAGATCCTTGCCGGTGGGAAAGTACTACTGAGCCGTCAAGAAATAGCGCAAGAAGATGATGTCATGGACGCATTCCTACATTTTCTCGCTGCTGACATCAAAAGTGCTCCTCAGAATGTTCAACCTTTCGACATGTCGCGAGGCCGCGAACTGGTTGCTGGCATGAACGTTAACATTGACGATGATATCTGCGACGAGGACTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //