Array 1 133550-140515 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTPX01000014.1 Glaesserella australis strain HS4635 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 133550 32 100.0 35 ................................ ACATCACCGCCGGATACCCAGATCCCATTTTGCGG 133617 32 100.0 36 ................................ CCATTTTTTACCACCGGTCAAAAAGGGGGGTGACTT 133685 32 100.0 34 ................................ TTCAAAAGACAAGCAACCTGCGGTGTAAGTGTTA 133751 32 100.0 35 ................................ GCCTGCCACGTCAAAACGCCTGCGGTTATGGCTAT 133818 32 100.0 36 ................................ TTATGTTTTTAAATTAAAATAGGAGAAAAAAAAATG 133886 32 100.0 34 ................................ ACCGCAGATAAAGCGTTGAAGTGGGTGGTGGGTA 133952 32 100.0 35 ................................ TGGATTGCTACGCCTTACGATATGGGCGATCCACC 134019 32 100.0 36 ................................ ACAGTGGGGTAATTTGTCGTAAACCTGATGGTGAAG 134087 32 100.0 34 ................................ CACGCCACCCAATTCTTTGAGCAGCAAATTGGTC 134153 32 100.0 34 ................................ GGGTAGGTCGCTTTCTTCAAAAGACAAGCAACCT 134219 32 100.0 36 ................................ TGCTAACGCCCTGCGGTTGTTAGACTAAAAAAGCCA 134287 32 100.0 36 ................................ ATAATGGTGTCCGTTCTTCTATTTTGACCGCTGAAA 134355 32 100.0 36 ................................ AAATAAAACTAGTATTAAACCTGAAGAAAAGAAATC 134423 32 100.0 35 ................................ TATAAGTGAGTTACTACCATGAAGGGCTTTTAGTA 134490 32 100.0 33 ................................ TATCGACTTTTCATTTCTAGAGTTAAATTCTCT 134555 32 100.0 35 ................................ ATCTTCTGAAGCATATTTCGGATCAGCTAATAATG 134622 32 100.0 35 ................................ AATTATGACTAGACAAAGATTGAAAATCATCCAAT 134689 32 100.0 35 ................................ TGTTGTCGTTCAGCCTCCATCGCATCATAAACCGT 134756 32 100.0 35 ................................ TGCAACTTATACATAGCTCTAGCCACGTTTTCAGA 134823 32 100.0 36 ................................ AGTATCGTCAGGAACACCAGGAGCACAGACCTCCGC 134891 32 100.0 36 ................................ AAGGTGATGAGCAATGCTATTTTGCTCAGACAGCTC 134959 32 100.0 36 ................................ TCCACCTCGGTTTCTGCATTTAGCATTTTATCCCAC 135027 32 100.0 35 ................................ TTTATAATGCAATCACTTTCTAGGAAGAACTTTGT 135094 32 100.0 36 ................................ AATGCGAATAGCGTCACGAGCCTTTGTTTTTGGCGG 135162 32 100.0 35 ................................ TAGGGAACACTAGGAAGAACTTTGTAACAATAACT 135229 32 100.0 35 ................................ TATTCCGAAGTCAAAGCTTTATTTGCTACTGATGA 135296 32 100.0 33 ................................ TATCTAGCCAATAGGCTATAAGGATCAATATAT 135361 32 100.0 36 ................................ CCGCTCGCTCGCCACGCCACGAAACCACGCAATCAC 135429 32 100.0 34 ................................ TAGGCGGTTTATCGTTGCTTGCATTGTTGCAGTA 135495 32 100.0 35 ................................ CCTACAATGTACTCACTTTCTAGGGAATACTAGGA 135562 32 100.0 35 ................................ TGTTTTTCGTACCAAGTGCGACAAAATCCACAAAA 135629 32 100.0 34 ................................ TTATAATGTGATCACTTTCTAGGGAACACTAGGA 135695 32 100.0 33 ................................ ACTGGGTAAAGCCGGTGCAAGCCGTGACCCATC 135760 32 100.0 35 ................................ ATTTTTATCAATGTTCGACGGTGTGAGGAATACAA 135827 32 100.0 35 ................................ TGAAAAAGGAAAGTATCCTTACACTTGGGCTATGT 135894 32 100.0 35 ................................ AAGGAAATTATACTCGTTAATTCGGCGACTAATCC 135961 32 100.0 34 ................................ CAACAATCTCAATCACTCGCTCCACGTCATCGAC 136027 32 100.0 35 ................................ AGATCTAAGATTATCTAGATCTTGCATTACATTAG 136094 32 100.0 35 ................................ TAGGGAACACTAGAAAGCAATCATTATCTAGTAAC 136161 32 100.0 36 ................................ AAAAGAAATAGTATCTGTTGTCTATGGTGATCAGGC 136229 32 100.0 34 ................................ ACCAATAATGTCCCACGTTCAAAGGCACTAACCT 136295 32 100.0 34 ................................ GTCTCTTTGAGTTAGTTTAATATCTCGTGGTGGC 136361 32 100.0 34 ................................ CACATTATTAACCACGATGGCATAAAAGTTGTAT 136427 32 100.0 36 ................................ CGTCATAAAACCCTGCAAGTTGTGTACCATCAACAG 136495 32 100.0 35 ................................ AATAAACACAGGTATTACGCTTACGAAGAATAACA 136562 32 100.0 34 ................................ ACTCAAACGGAAGTGCTTTTAACTGAAATGAATG 136628 32 100.0 36 ................................ TTTAATGAAGCTGATGACGCATTAACAAAAGCGTGG 136696 32 100.0 33 ................................ TGTACGCTGTGTGACAGGGTTATATACCTGAGC 136761 32 100.0 34 ................................ CACGCTAAACGTAAGCTCATCATCAGGATCCATC 136827 32 100.0 34 ................................ TAGGGAACACTAGAAAGGATAATCTAACAGTAAC 136893 32 100.0 37 ................................ GCTACAAAGTGATTGCGTGGATTTTGTGATTTAGTGA 136962 32 100.0 35 ................................ ACTTTTTCGCCGTATATTTCAACGGCGATCTCTTT 137029 32 100.0 34 ................................ TTTATAATACAATCAAGTTTTAGGGAATACTAAA 137095 32 100.0 35 ................................ CAATCTTTGCTATTTAGCTCTTTCATTGAAAAAGT 137162 32 100.0 36 ................................ CCATCGTGGGCGAGAATCAATAGATGATGAGCGAGA 137230 32 100.0 33 ................................ AGGATTGCGAAGTTTTGCAGAATTAACACCGCT 137295 32 100.0 34 ................................ CATGGGTCCGATATAACCAATAAATAACAGTTTT 137361 32 100.0 34 ................................ ATCACGAGCTAAATTCAGCTCACCAGCAAGGCTC 137427 32 100.0 35 ................................ CTTTGTTGGCTAGAAAAAGAAGATGGCAAGATGGA 137494 32 100.0 34 ................................ TATTTATTATTTAGTCTCTCTTGAGCAATGTCGA 137560 32 100.0 34 ................................ CTTTGCGTGTTTGTGGTGAATACCAAAGGCGAGT 137626 32 100.0 33 ................................ ATTTGAACCCATTTAGCGAAATACTTTGGCGTT 137691 32 100.0 35 ................................ GTATGGTTCGTGCCACCTAATAATCTTATGATTAG 137758 32 100.0 34 ................................ TACCGATGACTTACTTAAACTAAAAGCCCAAGTC 137824 32 100.0 35 ................................ TACGCCCATACGGTTAGCACTCTCGTCTAGCAATG 137891 32 100.0 35 ................................ TCGAATGGGCGAAAGAAGCTGACGAAGCAGATGTT 137958 32 100.0 35 ................................ CAACCGAGCGTAGCACGCAAAAGCCGTTATAACCC 138025 32 100.0 33 ................................ CCTAAATTCGCTAAACTAGGCGATACGGCTTTT 138090 32 100.0 34 ................................ GTTTATGACGGCTTAAAAACAATGCGTAAACGTA 138156 32 100.0 33 ................................ TTCATAGTTTTAACCTTATAAATTTTCTTGTAC 138221 32 100.0 34 ................................ AAGGCATTGCTAAACGTATGGAAAAAGCGAAAGA 138287 32 100.0 35 ................................ AGGTTTGATGTTATCAAATGCACAATTATCTATTA 138354 32 100.0 35 ................................ TTTCTCACGACCTAAAGCAATCACATCTTGCGTTG 138421 32 100.0 35 ................................ GTTGCAGATCGCCCATCACTAGCAAGAATGTACAG 138488 32 100.0 35 ................................ TTATTATTAGGTAAAACCAATAATATATTTAGTGC 138555 32 100.0 35 ................................ GATTGAATAGACACCGCCCAACGCTTTTACAAGTT 138622 32 100.0 34 ................................ CGATAAGGCGTTGTTTGTTTAAAAGCTCGTATGC 138688 32 100.0 35 ................................ ATCATCAGGTTTAGCCCCTTTAGTTGGAATAGTTA 138755 32 100.0 34 ................................ TACACTTCTAAAGCGTTGGAATGAATATAGAGGA 138821 32 100.0 34 ................................ TCTTAAACGCTCTCTATCAAAAAGGCGTTTCTTG 138887 32 100.0 35 ................................ ATATAAGCACGAACGGCTTTATCCATTTCGATGGC 138954 32 100.0 34 ................................ ATCTTTTAGAGAGTGGTAAAAATGGCATTAAGTG 139020 32 100.0 36 ................................ CCTGCTCTCAAAAAGCAATCCACAACGGTTATCTCA 139088 32 100.0 35 ................................ AATAAAAGGAAACCCTATGTACAACAAAATAATCA 139155 32 100.0 34 ................................ CGCCTTTACCACTTGGATAAAGCGAATTCGCAAG 139221 32 100.0 34 ................................ ATCAATGTCTGCACCTGTTTCTGCGCTTAAACCT 139287 32 96.9 35 ..T............................. CGCTCAGCCACGGCGTCCGTGTCAATCCATTTGTC 139354 32 100.0 35 ................................ ACTAAAAAACACTAAAAACAAAACCATAAAAAATA 139421 32 100.0 34 ................................ CAGCGCAAACTTGCGAAGGAAATCCCCTACGGCG 139487 32 100.0 35 ................................ AAAACTGGGTATTTGAAGAAGTCCTACCGCAAATC 139554 32 100.0 35 ................................ GATTTGCGTAATCTTTTCAGTTTTGGATGCATCAT 139621 32 100.0 34 ................................ TTGGTAAAGTTGGTACATTTGCTCGCTATTGTGA 139687 32 90.6 34 .........TT.A................... TCATTTATGTTTTATCCTAAGTATTTTGATAAAT 139753 32 90.6 33 .........TT.A................... GGTATATCAGGTACAGGCAAATCACGTTTTGTG 139818 32 90.6 35 .........TT.A................... CATAAACACAAAATAATTCATCAACAAAACGCCCC 139885 32 90.6 35 .........TT.A................... ATTGTAGGGCATAACGGGATTGGGGTGATTTTGGG 139952 32 90.6 36 .........TT.A................... AAGCCATAAACGCTTCGCTTCGCGGTAGCTGTGCTC 140020 32 90.6 34 .........TT.A................... CAACTGCTGACGAATTTCAAGGGGTGTGACGTTG 140086 32 96.9 34 ............T................... GTTTGAGTTCAGATATTTCTTTGTCTGTTATTTT 140152 32 96.9 35 .....................C.......... TGATTAAGTCAATAAAGACCATAGATTAGTTCCCG 140219 32 90.6 34 .........TT.A................... ACCAATACGCATCACAAAATCATCAACACTGGCG 140285 32 90.6 35 .........TT.A................... ACTATTTGCAACAGGGGTTGGATCTTGCTCATTAT 140352 32 87.5 34 .........TT.A........C.......... CAACAGCTTTACTATTGGCTCGCTTTCAAGGGCT 140418 32 90.6 34 .......T....A....T.............. GCTCAAAATAACTATTTCTGCCCAAAGCTAATGC 140484 32 78.1 0 ..T...T..T...A.A......A.A....... | ========== ====== ====== ====== ================================ ===================================== ================== 105 32 98.8 35 GTCGCTCCCCACGCGGGAGCGTGAGTTGAAAC # Left flank : ACCCGGCTGTAAGATGTTTAAGGAGAGAATATGTTGATGTTAGTTACCTATGATATTTCTTTTGATGACCCCGAAGGGCAAGCTAGACTGCGTCGTATCGCTAAACATTGTCTTGATTATGGCGTGCGAGCGCAGTATTCGGTGTTTGAATGTGATGTTACCCCAGACCAGTGGGTCAAGCTCAAACAAAAATTATTAGAAACTTACAATCCTGAAAGCGATAGCTTGCGATTCTACCATTTGGGCAGCAAGTGGCGAAATAAGGTCGAACACCACGGCGCAAAACCTGCGGTGGATGTGTTTAAAGATGTGCTTATTATCTAACGCTAACCTGTGGTTCTCATCAAAATACAGTAAGGTTAGCGAAAAGCTAACCCATTGAGTTCTTTAACAATTGAAATAACTTATTGAATTTCTTAGAATAGAAATGTTTTCATGGCGATAGCTTAGCGATTTTGCTTATCTATCTCCTTGAAAATACTGCCATTTTCATAATGGCA # Right flank : CTAATTTAAGCTAGCTTTTATAGATAATCCAAACTTCTATTCAGAGAGATAAATTGAAATATACTAAAGTTTCTTATTTATTTTTAGTAGACTTGTTAATTTACTTTTTTTCTGTAAATCGGATAAGATTCTATTAAGGCAAATTAATTTCAGGAATAAATATAAATGGATCAGCTTTATCTCGCATCGAACAGTCCACGTCGTTGGGAATTGTTGCAACAAATTGGTTTACAACCGATTAAAATAGAGAGTGAAATTGATGAGACGCCTTTGATAAATGAAGACGCAAAGTCGTACTGTTTACGCATTGCTTTGGAAAAAAATAAGGCAGCACAAGGGGTGAGATCTCACAAAAATCTTGCAAATTTACCTATTTTAACGGCAGATACGACGGTTTCTGTCGATCATCAAATTCTAGGAAAACCACTAGATCAAGCTGATGCATATCGAATGTTAAAATTGCTTTCAGGAAGAACTCATCAAGTATTTACTGCAGTATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACGCGGGAGCGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //