Array 1 276-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJJX01000036.1 Frankia sp. CpI1-P FF86_1036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 275 29 100.0 32 ............................. CGGGTGAGCGCGGAGGCCGGTACGGCGCTGCT 214 29 100.0 32 ............................. CGGGGGGCGTCGGCTGATCTGATTCAGGTTTA 153 29 100.0 32 ............................. GCTTGACCGGATCCGACTTTCATTCACTGTTA 92 29 96.6 32 ............................G TGAATAAATGCGAACTGCATGAGGGAGGGGCG 31 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTCGTCCCCGCACGCGCGGGGATCTTCCC # Left flank : CTGCGCTCGTTCCTGCTCCGGATGCACGAGGTGGTTGGAAGCTGCCGGGGCCTCGCGGCCCACCTCGCGGCGCACGCCGACGACCCCATCACCGCCCGCCTCTACCACCCGTTGCACGCGGCGCTCACCCAGACCGGCTTCACCCCCGACGGNGCCGACCGGGTGCTGCGCGTGCTGTTCTTCTACACCTCCGGCGCGCTGCTGACGCCCGCGTCCGAGCCGGCCCGCGAGCGCGCCGCCGCCGACTTCGCCGCCGGCCTCGACATGGTGCTCGACGGCGTCGCCCACGCTCTCGCCNCCGAGCACGACCCCACGCCCTGATCCACCAGCCAGCGTCGCTCCGGCGCCGGCACGGCAGCCAGACGCATCCCCTCGGTCGGCCTACTCGCCCCCTCCAAATCCGCGCTACTCGTACGGGACGCGGCAAGGCTGGCGAACGTCCCGCGTCCCTACCGATGCAAATTGCGCCGCTCTGTTGCTAAAGTCCCAGCTCAGCAAGT # Right flank : CCC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 157122-157272 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJJX01000004.1 Frankia sp. CpI1-P FF86_1004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================ ================== 157122 32 100.0 32 ................................ TAGTTGCCGGGTGCCGCGCCGGCGTAGTCGCC 157186 32 100.0 23 ................................ CAACACCGCGACGAGGCACGTAC 157241 32 68.8 0 .................G..T.CAGC..TTCG | ========== ====== ====== ====== ================================ ================================ ================== 3 32 89.6 28 GGGTCGCTGATCATCCCTAGAGGGATCGCAAC # Left flank : TGCGTCTGGGCTCGCCACCGGGCCGAGGCCGGCACCCGGACGTCGCCCATGCTGTCGTGCTCGATGCGGTATTCCTGCTCGCTCATGCGCCCGTTCTCCCGATGTTCCGTCGCCGTTGACCTGCATCTGACCAGCACCACACGCCGGTGCCCACCACCCGGCGAGAGGCCGTCTGGACAGCGGCCCCATCGCCCGACCCTAGGACATGTCGGGCGACTGGTGCCCGCGCCGCACGGGCGCATGGGAGCTCTCACACCGTCCCCCGCAAAGCGCCTCCGGCGCTTTGCGGGGACCCCTGGTATTGGGCGCCGTGCGGGTTTCGGTCAGATCGCCTTCGGCGAGCTTCCCTGGATGTGGGTGTCGGCGTGATCGGGCGAGTCTGGTGCGCTCATGGTTCGGCGGGTGGCGCGCGCCAGGCCCGGCACCCGTCCGCAACATCTCGGAACGGCCGACGGGATCGCAACCAGCCTGTCCCGCCCCGGCCGCGGCGACCGCCTCGA # Right flank : GCTAGTTCTTCTCCGGTGTTCGGTGACGGGGTGTGATGTCAGCCGACGCCCGCCTCGCCGCCGGGTGGCCCACCGGCACCGCCAGGCCGCCCCGCGAGGTAGGGGTGTGCATGGGAGCGGGGCTACCTGTTCCTTCTGGGGGGACGAATCGGGCGCCGAACCCCCCCAGAAGGAACAGGCAGGCGCTTTCCCACGCATCCGCTGCCAACGCACGAGCCGTCGCCCGGTCTGCGACCCGACTTAGCCACACCGCCTGCTGTCACGGAACGTGATAGGAGGACGGGAAGCGGGCTGCTGAGGCGCTGCACTATGTGGGGAACCCGGGGGAGTGGCAGGTCGGGCCGGCTGGCACGGACGGGGAGCGGGGCGCCAATGAGAGACGCCCACTACCCTGCCGCGTGGCGTCGGTGCCACGGGGCGGGGCAGTGGGCGTCGTTGTTTGGGTGGTGCCGCTAGGAGACGGCGGTCTCGCGCTCGCGGGCGCGGATGTCGCGGCGCAG # Questionable array : NO Score: 4.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.48, 5:0, 6:0.25, 7:-0.49, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTCGCTGATCATCCCTAGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 45421-45149 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJJX01000054.1 Frankia sp. CpI1-P FF86_1054, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45420 29 100.0 32 ............................. GTCACGGAGGCTGGGTATCGCCACCCGGCTCG 45359 29 93.1 32 .......T....................G GAACGGCCCACGGAGTGACCCGGTCCCGACCC 45298 28 93.1 32 ...........-................G GGCGGGGACATATCCCAGTGGTCGACCTCGGT 45238 29 89.7 32 ...........CT...............A TGGGTCGTGCTTCACGCCCTCCACCCCGCGTC 45177 29 93.1 0 ......T.....T................ | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.8 32 GTCGTCCCCGCACGCGCGGGGATCTTCCC # Left flank : ATGCT # Right flank : GTCATCTCCGTGCTCGACACCATCGGCCGGTAATTGTTCCCGCAAGTGCGGGAGTTCTGTATGTCGCAGGTTTCGTGCCTTGTCATTTTTGACTACACGGAAATATATCCTGTGGATGATGGGTCTTGGGGCGTTTTCTGCTTGTCTCTGGAATGCGATTGAGTGGAATCTTTGAGAGGGGTGTGTGTGGAGAGTTTGGCGCTGGGAGTGGTGTGGGGGAAGTCGGCGGAGAAGGGGGGTGGTTCGATGCATCTTCTGCTCGGGCATCTGCTGGATACGGCCGCAGTGGGGGAGCTGGTCTGGGATCGGTATCTGGCGCCGGTGATCCGGGAACGGCTCGACGCGGTCAGCGACGGGCAGGGGCGGGCATTGTTCGCGTTGGTGTGCGGGCTGCATGACGTCGGGAAGGCGACGCCGGCCTTTCAGATGAAGGACGACGGCCTGGCGGCACGGGTCCGAGCGGCGGGTTTCGACTGGAAGAGCGTGAGCCCGCAGCAGGG # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16381-15742 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJJX01000088.1 Frankia sp. CpI1-P FF86_1088, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16380 29 93.1 32 ............C...............C CTGTTCTGGGCCGCACGCGCCGCTGTGCTGGT 16319 29 96.6 32 .....A....................... TGTGACGTCAACGAGTGCATCGCCCGCGATGC 16258 29 96.6 33 ............................C CGCGGTGCTTCCCGGAACGGCAGCGCTTCCGTC 16196 29 96.6 32 ............................C TCGCCCGGACCGGCCGGGGAACGAGCAGAAAT 16135 29 100.0 31 ............................. CCTCAGGGCACTCGGGGCAGCCGCGAGGCGG 16075 29 93.1 32 ..........T.................C CGGGATCCGTCTCACCGCCGTCCTGCACCGGG 16014 29 100.0 32 ............................. CACATTGACACCGCGCTGGATAACGAGGTCAC 15953 29 100.0 32 ............................. GACGGGGTGGACCTCTCCAAGGTCGAGGGGCT 15892 29 100.0 31 ............................. TCCTCTTCATCATCCTTTCACCATCGGCGTC 15832 29 79.3 33 .....T......C.......A..G...GC TGGGCTCGCCCGGCTCGTCTCGGAGCATCACAT 15770 29 82.8 0 ........T..TC...........A...T | ========== ====== ====== ====== ============================= ================================= ================== 11 29 94.4 32 GTCGTCCCCGCCTGCGCGGGGATCTTCCG # Left flank : CC # Right flank : TGCGGACAGCTGACCTGCGGTTCCGGATGAGGGACGGCGGGCACCTGGGAGTGCGGGTCGGCCTCGGGTAGACGTGGCATCTGATCGGTCGANGGGTGTTGATGGTGGGCTGCGAATCGCATGGTTGGATAGTGAGCTCGATGGCCCTACTNGGGGGATGTGGTCCATGGATGACGCGTTGGCAGTGGTGTGGGGGAAGTCGAAGGCGCCAGAGTCGATGCACCTGTTGCTCGGGCATCTGCTCGACACTGCGGCTGTTGCGGAGCTTGTCTGGGATAATTTCCTCTCGCCCGTAGTACGGCGTTTTCTCGATGACTGTAGCCAGGGCCGAGGGCGGTCGCTGTTCGCTCTTCTGTGCGGACTGCATGATGTGGGTAAGGCGACCCCGGCGTTCCAGATGAAGGAAGCCGCGCTGGCCGACCAGGTCCGAGCCGCCGGTTTGGACTGGGGGACTCTTACCGTCGATCAGGGTCGGCGATGGCATCACGCGCGAGCAGGTG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCCTGCGCGGGGATCTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 15730-15519 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJJX01000089.1 Frankia sp. CpI1-P FF86_1089, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15729 28 100.0 33 ............................ TGCCACCGACCGCCTCTCTGCGCACGAAATGCA 15668 28 100.0 33 ............................ GGCTCATGGCTCATCATCGACGGGTACGAAAAG 15607 28 100.0 33 ............................ GCAACCGCGCCCCGTCGCGTACACGTCTGCGGG 15546 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : TATGG # Right flank : ACTTGCTGACCTGCACTTTCTCACAGGTAGGCCATCCAAATTTATCAGTGCGGGCGGGACGCGAAGGCATCTTGACAGGCAGCCAATAATGATCAACTATTGGTCGCGGCCTCTCGCTTGCCGGTGGTACAGATTTTGAATGGTCAGGGTCTGGTTACGGGGGTTGCGGATCCAGGGTCAGGTCGNTCTGGCCGAGGAAACCGGTGATGAGGTCGGGTCGGTACTGGATGCGTTTGAGCAGGGTCTTGATCGTGATGGTGAGCTGGTCGACGGTGACGCGGGTGTGGTTGCCCAGGTCGCGTTTGACATGCGCCCAGACCCCTTCAGTCGGTTTGCCGCGGTGCAGGTCGAGTTGGACAGGGCGGCGCTGACGCGCCGATTATCAGTGGGGAGGGGTTGCTGCGGCTGGTCGAGCTGGTTGATCAGCTACGGGCCCGTGAGCGGTGTGAAGGCGGTGCGTTGTGGACGGCACCGGAACAGACGATCTCCCCGGATCCCGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA //