Array 1 337-5836 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJTD01000060.1 Flavobacterium psychrophilum strain KKAC-1706 contig00060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 337 46 100.0 29 .............................................. CTTGACGAACCTCCATAGATGTAGATATA 412 46 100.0 29 .............................................. TTGTTGTTGTTTTTAATAATTAATGTTGT 487 46 100.0 30 .............................................. TCTACCATGATAACCACCTTATCTATAGTA 563 46 100.0 30 .............................................. TTATCTTCACACGTTATCGTTAAACCACCT 639 46 100.0 30 .............................................. ACAGAGTATCATCGTTTATACACCAAGGGA 715 46 100.0 30 .............................................. ACGAAATCTCATTGATGAGTACTCGTTTTC 791 46 100.0 30 .............................................. AAAATTATTGAAAGGTTCAAGACTGATTTA 867 46 100.0 30 .............................................. TTATCTGTTATTAATTTTGGACCATTTTCA 943 46 100.0 29 .............................................. ATCCTTTTTGTATATTTGACCAAATTCTG 1018 46 100.0 30 .............................................. GTTGCTTGGCATCTGTTGCCGATAACGTAA 1094 46 100.0 30 .............................................. CCATAAATTGTATATCCTTTTGCAGTTTTA 1170 46 100.0 30 .............................................. CTTATCATGTTCGGGGGTAAAACGACCTAA 1246 46 100.0 29 .............................................. GGGCTCATTATCTACCTTGTAAACAATAT 1321 46 100.0 30 .............................................. ATTTCAAGGAATAATATAAATTATTTATAC 1397 46 100.0 29 .............................................. ACGATGATTTTATTCAGTTATTGCTAAAT 1472 46 100.0 30 .............................................. GTAATTAAAAATTACTACATAACATCTACT 1548 46 100.0 30 .............................................. AAAAAATTAGCGAGGCTTTTCCATTTTCTA 1624 46 100.0 30 .............................................. TTCCCCATAAAAAAAATTAAATGAAAAACA 1700 46 100.0 29 .............................................. CTGAATGTAAGCTTATTGAATCATTGTAA 1775 46 100.0 29 .............................................. CAAAGGATTAGATGGTGCGTACAACCCTG 1850 46 100.0 30 .............................................. TGCTTGTAATTGATTTATCTCTAATTCCAA 1926 46 100.0 30 .............................................. AAATTCTTCTCATTTGGTTTCTTTCACTTT 2002 46 100.0 30 .............................................. AAAAGTGTCCTCACTTATCTCATATTCTTT 2078 46 100.0 30 .............................................. TGTTGGAAAAAGTCAGAAGATACACTAATT 2154 46 100.0 30 .............................................. TCTAGCCTTTTTGTAGATAAGTTCGCCTTT 2230 46 100.0 30 .............................................. TGACACTTCTTTTAAATCTGTTTTCACTTT 2306 46 100.0 29 .............................................. AGATACATTTTTGTCCATGTACTTGATTA 2381 46 100.0 30 .............................................. GGATTACAAATATTTTCGATGGATGAAATC 2457 46 100.0 30 .............................................. CTTATCATGTTCTGGGATAAACCGACCTAA 2533 46 100.0 30 .............................................. CTTCTGATTTAGAACAAGCAATTGAATTAT 2609 46 100.0 31 .............................................. TATTCAACAATGAAAGTGTACGCTCCAGCGA 2686 46 100.0 30 .............................................. TAGTATATAAATTGATTTAGTATTACGCCC 2762 46 100.0 30 .............................................. GTGTTATGGCGTGATTTGGAGGTTCACATC 2838 46 100.0 30 .............................................. ACATAGCAACAGATTGTTATATCGAATACT 2914 46 100.0 30 .............................................. TGGCATCTTTTACAGGATTAACTACTGGGG 2990 46 100.0 30 .............................................. ATGTTTGAGCAATTTAGCAAGGCTCAAAGA 3066 46 100.0 30 .............................................. ACAAGGCAAAAAAGGAAGTTACGAACGATC 3142 46 100.0 29 .............................................. CGCTTTCAACAAATCACAAGCCATTGCCG 3217 46 100.0 29 .............................................. CTTTCAACAATCCTTGCCCTGTTGGGTTA 3292 46 100.0 29 .............................................. AGAATATTTTTTTTACATTTGTGGGATAA 3367 46 100.0 29 .............................................. AATATCACTTGCTCTTACATTGTCCTGCA 3442 46 100.0 30 .............................................. AAATCCTTCCTTTGGTAAAGCATCTGGAGC 3518 46 100.0 29 .............................................. CTTTCAGAAATCCTTGCCCTGTTGGGTTA 3593 46 100.0 29 .............................................. GGTTATGGTTGTGTTTATTGGGTGTTCTA 3668 46 100.0 30 .............................................. AATGGGAGCAAGTGGCATAGAAGTAGTGCA 3744 46 100.0 30 .............................................. TTCCGTCAACATAGAGATTACCACTGGTTT 3820 46 100.0 30 .............................................. TCAATATGTGCTCTCTCAAGCAAAGACTCA 3896 46 100.0 29 .............................................. CAAGTAATAAACAAGCCGAGAAATCACTT 3971 46 100.0 30 .............................................. CGGAATTATATGGACGAATAAGTCAATAGA 4047 46 100.0 30 .............................................. TTGTTAATAGCTTAAATACCCTCTTTCCGT 4123 46 100.0 29 .............................................. TCTTTTTGATTATTTCTTTTTCTAATTCT 4198 46 100.0 30 .............................................. CAAACATTTCGAGCTTTAAAGGCTGCTTAA 4274 46 100.0 30 .............................................. TTAGTATTTGATTCGGTTGTGTACAAAGAA 4350 46 100.0 30 .............................................. CAACCGTTTGCGTGTATGGGAAGTGCGGGA 4426 46 100.0 30 .............................................. ATAAGCCATCTGAACATCGACCTCGCAGCT 4502 46 100.0 29 .............................................. TTCTATTAATATCAATTTCTTCTATTTCA 4577 46 100.0 29 .............................................. AAAAGAAATATTTAGTGAATATTACCCAT 4652 46 100.0 29 .............................................. ACTACAAATTACTAGAAATACATAGAGAA 4727 46 100.0 30 .............................................. TCTTTCCTCCCGAACCTAGTCTGTTTCCTC 4803 46 100.0 30 .............................................. AAACATCAAAAATTGTGGCTGTTTTTACTA 4879 46 100.0 30 .............................................. TGCACTTCTGTCGGGTTTTGCGTTCCAGCC 4955 46 100.0 30 .............................................. AACTATATTCGCATAAAGTTCAGCAGTTGT 5031 46 100.0 31 .............................................. CTATGATAGGTAAATATAGACCTACCGTTCA 5108 46 100.0 30 .............................................. TTTCCTTGGCTTTTAAGGAAGTCGTGAATA 5184 46 100.0 30 .............................................. CTATTCTTGGAAAAAAATTTAGAAAAAACA 5260 46 100.0 30 .............................................. GTTGGCAATAGATCCGTCTTCTAACATGAC 5336 46 100.0 30 .............................................. CCATTGGTTTGTATTGATGATGTTACTGGC 5412 46 100.0 30 .............................................. CATTCGGAAGTTTAATTGTAGAAATTTGTA 5488 46 100.0 29 .............................................. CCTTTGCGACCAGTAACATACATCGAGCC 5563 46 100.0 30 .............................................. CTTAATCACGATTAGGGATACATTCACATC 5639 46 100.0 30 .............................................. TTATCGAATTTATGAATGAGTATCAATTAG 5715 46 100.0 30 .............................................. TATAGGTATCGTGAAACCAGTCGACGTTTA 5791 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 73 46 100.0 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : AGGTTTTTTGATGTTTCTCATTGTCTAAATGTGCATCAAGTTCTGCTTCAAGCATATGTTCTACTGCTCGTTTGTGCATTTGTTTAAAAAATGAAGTTAAATCTTCTCCATTTTTAAAGGATTTGTAGAATTCCTTGTTGTTTAATAAGTTGTCTTTGTCTATCATAACTATGTAAATATATAAAATGTTAAAAAGTTATTTCCGAAAATTTTTGAGCTTTTTGAATTAGCTCAAATTTTCAGAATAACTTTTTAACTTACACACTTTGTGTTATACTGCCAGTATTTTAGCTTATAATTACCAACTCGATAATTTATTTATTTGGGGGAGTGCCGG # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATCACACCAATTTTGCCATGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 539-2559 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJTD01000075.1 Flavobacterium psychrophilum strain KKAC-1706 contig00075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 539 46 100.0 30 .............................................. TGGTTGTCGCATCCGTATCATATCGCACAA 615 46 100.0 30 .............................................. CAGTTCTTGACACCGACATGATGCCTTCTG 691 46 100.0 29 .............................................. TCATCCAACACAAAAGCCTGTTACATTGT 766 46 100.0 30 .............................................. TTTTTAAGAAAACTTCTGACAGCTGGTATT 842 46 100.0 30 .............................................. TTACCCTCTAAAACCGATTCCGAAAAACTC 918 46 100.0 30 .............................................. GAGCAGACCAAAGATTAATCGCTAATGCTC 994 46 100.0 30 .............................................. CTTCTTCGTTAATAAACTCGACTAACCCGT 1070 46 100.0 30 .............................................. ATCATTTATTATCGCCTCAAGCACTTCTTT 1146 46 100.0 30 .............................................. TAAAAAAAAGATATGATGATTTTAAAAATA 1222 46 100.0 30 .............................................. AAAAATTGCACGAAATTCAAAAGCAAACAC 1298 46 100.0 30 .............................................. TTGTAAGCAAACCAACGCTTCCGTCAGGTA 1374 46 100.0 30 .............................................. GTAAGCGCAAAAATAAACTCAATTAATCAA 1450 46 100.0 30 .............................................. CCATTTGGTGGAGTAGTGATTATCGATACT 1526 46 100.0 30 .............................................. ATCTCTTGTTCCCATTCGTGGGCTTGGGTA 1602 46 100.0 30 .............................................. CAATTGGTTTGATGGTATCGTTACGTTCAG 1678 46 100.0 30 .............................................. GATGACAACTATTACTTGCTCGATAACGAC 1754 46 100.0 30 .............................................. AATTCGAAAATAAATTAAAAATGTTATCTA 1830 46 100.0 30 .............................................. ATTGATAAGTTAAAAAAAGATTTGATTGTA 1906 46 100.0 29 .............................................. TTTGATATTGAATAATTTCAATAGGTTGC 1981 46 100.0 30 .............................................. AATATTTAAAAACTATTGTTTAAAATTATA 2057 46 100.0 30 .............................................. ACGTACACTTTAGAAGAGCTAGACCATTTA 2133 46 100.0 30 .............................................. GAATTAGGAATTAACTATTAAAAATCATGG 2209 46 100.0 30 .............................................. CTGGAAGCCCAGAGTTTGTAGAGCCATTGT 2285 46 100.0 30 .............................................. TATCGACAATGAAGAGATTATAAGACTCTT 2361 46 100.0 31 .............................................. TTGTGGGGTAGCGTGCATCTTCACACGCATG 2438 46 100.0 30 .............................................. AGATAGATTTAAGAATGAACCTGAACAAAA 2514 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 27 46 100.0 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : CTACCGTCTCGATCTCTTGGAACTTTAATTTCATCTTCACCAAAGGAAGTTTTTATTTTCTTGGTTCCGTGTCCATTACGGTAATTACCATTGGAGGTTTTTTGATGTTTTTCATTGTCTAAATGTGCATCAAGTTCTGCTTCAAGCATATGTTCAACTGCTCGTTTGTGCATTTGTTTAAAAAATGAAGTTAAATCTTCTCCATTTTTAAAGGATTTGTAGAATTCCTTGTTGTTTAATAAGTTGTCTTTGTCTATCATAACTATGTAAATATATAAAATGTTAAAAAGTTATTTCCGAAAATTTTTGAGCTTTTTGAATTAGCTCAAATTTTCAGAATAACTTTTTAACTTACACACTTTGTGTTATACTGCCTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCCCAACAAGCCAATATATCACTGACTTTGTTTTGCT # Right flank : ATGTTTACAGGAAAATTAAAGGGATTAATAGTTGTGAATTGCGGCAGTATAACACAAAGTGTGTAAGTTAAAAAGTTATTCTGAAAATTTGAGCTAATTCAAAAAGCTCAAAAATTTTCGGAAATAACTTTTTAACATTTTATATATTTACATAGTTATGATAGACAAAGACAACTTATTAAACAACAAGGAATTCTACAAATCCTTTAAAAATGGAGAAGATTTAACTTCATTTTTTAAACAAATGCACAAACGAGCAGTTGAACATATGCTTGAAGCAGAACTTGATGCACATTTAGACAATGAAAAACATCAAAAAACCTCCAATGGTAATTACCGTAATGGACACGGAACCAAGAAAATAAAAACTTCCTTTGGTGAAGATGAAATTAAAGTTCCAAGAGATCGAGACGGTAGTTTCGAACCTGCTTTAGTGCCTAAAAGACACAATATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //