Array 1 13253-15614 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTDV01000081.1 Klebsiella pneumoniae strain KCJ3K53 NODE_81_length_22868_cov_4.321798, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 13253 29 100.0 32 ............................. ACAGAAACCAGCAGCGCTATAACCTTGAGGGG 13314 29 100.0 32 ............................. ACTGCGATTCGTTGACGATTATTCCTCCGCGA 13375 29 100.0 32 ............................. ACCCAGCAGCGTCTGCAGGACTTCGCGGGGAT 13436 29 100.0 32 ............................. CTCATAGGTATAGGCTGAGTTAACTGAACCGG 13497 29 100.0 32 ............................. GCTCGCAAGTTACATCGCTGCTGTGAGTGTCA 13558 29 100.0 32 ............................. GTTTCGCACTCGCCGTTCTGACTGCTGCGCCA 13619 29 100.0 32 ............................. GATCTCGATGAGGAGATTCAGATTCAGTGTAT 13680 29 100.0 32 ............................. TCATAGCCGCCGCCCATGCAACGCGCTATCAG 13741 29 100.0 32 ............................. CTGGCGATCATTAACGAGCCGCTGGGTAAAGA 13802 29 100.0 32 ............................. CCGCTAAAAGTACCTGTTGTCCCACCAATACC 13863 29 100.0 32 ............................. CCCGCGGGGATCTGATGATCCTGGGCGGAAAC 13924 29 100.0 32 ............................. GTGTGAGAGCAACCACAGCAATGACGAAGAGT 13985 29 100.0 50 ............................. CTGAACGGGGATAAACCGTATCGCATCCGTGAACTGCCGGTGCTCCAGAA 14064 29 100.0 32 ............................. AGCGCCGCTGGTGATTCTGGCGAAGAGGACTT 14125 29 100.0 32 ............................. GGTTTAACCGACATTCTCTCGCCCGCAGTAAT 14186 29 100.0 32 ............................. AAACGATAAGGCGTCGGTTACGTGAGTTTTGA 14247 29 100.0 32 ............................. CGCCGATCGTGTTCAGTAGCAACGGGTATGCC 14308 29 96.6 32 ............................T TCGCTGTATTCACTCACCAGCTGGCTGCGCGG 14369 29 100.0 32 ............................. GATCTCGATGAGGAGATTCAGATTCAGTGTAT 14430 29 100.0 32 ............................. GCTCAAATCACAGACGAACGTTTGGCAAAAAT 14491 29 100.0 32 ............................. CCTACAGTCACAGCAGGCGGCCAGCATGTGGG 14552 29 100.0 32 ............................. CCATCAATTTCCGACGTTTTATAACGTCCCTG 14613 29 100.0 32 ............................. ACCAGATAGAGATCCACATTGAGATTAACCCG 14674 29 96.6 32 ............................A CGCGGAACCGTAATTCATGCATAAAATTTTTC 14735 29 100.0 32 ............................. GGAATGGGAGACTGGCGTTTCATGATTAGTGA 14796 29 100.0 32 ............................. CGCCCACGCTTTCTGGTCCATCACAGCGATAT 14857 29 100.0 32 ............................. TTGCGCTCGGCGGCGCTGTTTCAACCGCCAGA 14918 29 100.0 32 ............................. GCGGCGGGTTTATGGGGAAAGACTGGGACAGT 14979 29 100.0 32 ............................. AACTCTGGCCCCTGGCGCGGCGCCAGGATATC 15040 29 100.0 32 ............................. CAGCCAGCCATCTGCCGTTGAGTCGATGCTGG 15101 29 100.0 32 ............................. GGCAGTCCAGTTATGGTTCGGGTCCGCTGTGG 15162 29 100.0 32 ............................. GGGCTCAAGGCCGTTATTTTCTACGTGTTGAA 15223 29 100.0 32 ............................. GATGCCAAAAAACTGTTTGCGTTTGCGTGGGC 15284 29 100.0 32 ............................. CCGCAAGCCGTATCAACGAATTACTGCTCGAA 15345 29 100.0 32 ............................. CCCCCCACTCGGTACGCATCATGATATTGAGC 15406 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 15467 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 15528 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 15586 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================================== ================== 39 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCTGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1452-449 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTDV01000279.1 Klebsiella pneumoniae strain KCJ3K53 NODE_279_length_4704_cov_12.535941, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1451 29 100.0 32 ............................. GCTATAGAACTGAGCTACACCACGGGCCGCAC 1390 29 100.0 32 ............................. GGAATGTCCTTGATTATATAAAGGCTGTCAGT 1329 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 1268 29 100.0 32 ............................. TGGTGCTCTCAACCGTTACCCGCTGGCTGGAA 1207 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 1146 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 1085 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 1024 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 963 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 902 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 841 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 780 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 719 28 93.1 32 .....-.......C............... TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 659 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 598 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 537 29 93.1 32 ............CA............... CACTACCAGATCCGAATGGACACCCGTAATGA 476 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 95.3 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTAAAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAGGGTCCCCGAGTCATGCGTTGTATACCGTGAGGTATGGGGCGAAGCG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //