Array 1 294674-295434 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVNE01000002.1 Escherichia coli strain UMDKSU-2013-3-111C NODE_2_length_417674_cov_21.9768_ID_12685, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 294674 29 100.0 32 ............................. CTCTGTTGCCTTCACGGCATCGCGCAACCCTG 294735 29 100.0 32 ............................. CAAAACTGGTTTATCTCCCGCGTAGTCCGCCC 294796 29 100.0 32 ............................. TTAGCCCGGCCAGTAGATTTTGCTCGCTGCGC 294857 29 100.0 32 ............................. GCGCAGGTTATCCGCTCTGTGCTCATTGACGT 294918 29 100.0 32 ............................. GGACAACATCGTAGGGGAGTTATAACGTTCAA 294979 29 100.0 32 ............................. TCGTCAATCCTATGCCTGCTCATGAGCATTAT 295040 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 295101 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 295162 29 100.0 32 ............................. ACGCCAGCGGTGGCGTTACTGAAATCCTCGGT 295223 29 100.0 32 ............................. CCGCCGGTTACTGCCCCGGCGTTCACTGCCGA 295284 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 295345 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 295406 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 321134-322809 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVNE01000002.1 Escherichia coli strain UMDKSU-2013-3-111C NODE_2_length_417674_cov_21.9768_ID_12685, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 321134 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 321195 29 100.0 32 ............................. ACGCGGGGTAAGTTGGCGCGGTCCTGGTGTGT 321256 29 100.0 32 ............................. GAAATATAGCGTTAAATAGTCAGGTGACAGAA 321317 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 321378 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 321439 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 321500 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 321561 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 321622 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 321683 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 321744 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 321805 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 321866 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 321927 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 321988 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 322049 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 322110 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 322171 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 322232 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 322293 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 322354 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 322415 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 322476 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 322537 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 322598 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 322659 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 322720 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 322781 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //