Array 1 32517-31588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFFT010000008.1 Escherichia marmotae strain 6-77 NODE_8_length_171951_cov_60.671067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32516 28 100.0 32 ............................ TCGCAGGGCTTGCGGGAGAAGGCAGTGAATTA 32456 28 100.0 32 ............................ TAATCTCACTGCTACTGTGCCAGCAACTGGCG 32396 28 100.0 32 ............................ GAAAGTGCCTTGGCGCTGGCGGTAAATTTCGT 32336 28 100.0 32 ............................ AGAGGGCGCGGTCGCGCCCTTAAGGTCAAAAG 32276 28 100.0 32 ............................ CTGGGTTATCTCCACGCTCGCCCGGTTAACTA 32216 28 100.0 32 ............................ TGAAAATAACTTCTGATATTGTTGGCGATGGT 32156 28 100.0 32 ............................ TTGGGCCATTGCGATAGACGCTGCCGGTATTG 32096 28 100.0 32 ............................ GCAATAAACCGTTTGCAACACCAGAATGGTGC 32036 28 100.0 32 ............................ CGTAGGGACGCCGTAACCGCCGATTACATAGT 31976 28 100.0 32 ............................ TGTACCTGCGCTTGTTGCAGCGGGTGCTACGG 31916 28 100.0 32 ............................ ATAGTGCGCAACGTGCGGGAGTCCATACAGAT 31856 28 100.0 32 ............................ CCCAGATAGTTGATAACTTCGTCGCTGTCAGC 31796 28 100.0 33 ............................ CCAGCCAGCATGATTCCGCGCGTTAATGTTGGA 31735 28 100.0 32 ............................ TGACGTAATAAATGCAATGCAAATGCTCGCTT 31675 28 96.4 32 ...........C................ TCGCTCCGCCAGTGCAACTGGTAGTAGAGTGC 31615 28 89.3 0 ....................T..TT... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACATGCTGTTTGCGTGACGGAGATTATGACCGTATGTGTTCTGTTTAATTGTTTATCAAAAACTATGCAGAAAATATGAGATTGAAGAAGTAACAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGGTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ATCCATACCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47735-46805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFFT010000008.1 Escherichia marmotae strain 6-77 NODE_8_length_171951_cov_60.671067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47734 28 100.0 32 ............................ TTGCACCATTCTGGTGTTGCAAACGGTTTATT 47674 28 100.0 32 ............................ AGAGACAATGCCGGACATACAGACACGGGAAC 47614 28 100.0 33 ............................ GCTCGCACCACCAGCGCCACCACCCACACCGAT 47553 28 100.0 32 ............................ GCCGTTCGATATTTTACGCCCGCAACGCCTGT 47493 28 100.0 32 ............................ ATCGCCCCAGCAATACCAGCAGCGGCTTTCTG 47433 28 100.0 32 ............................ CAGGTGAGCCGCGATACGACCGCGCAGACGTT 47373 28 100.0 32 ............................ GGTACGCCGTTGCTTGCCGCTGTGGTGAGACC 47313 28 100.0 32 ............................ TTGACCGTGCGCGGGTTCAGAACGCCGTCGTC 47253 28 100.0 32 ............................ GCAGTCGCAGCGGCAGAGTAATTGCGCGTTTC 47193 28 100.0 32 ............................ ACTACCAGCGCGGACGGATTGTTATGTGAATA 47133 28 100.0 32 ............................ ATGAATATCAGTGCGCTCGCGAGGAGCGTAAA 47073 28 100.0 32 ............................ AGTTCAGGCGCACGTTTGCTGTACTCATTAAG 47013 28 100.0 32 ............................ AGCAGTTCAATCGCTGGCTCAGGCGTCTGAAT 46953 28 96.4 32 ................A........... AGGAGCATTTGCGGCAAGGCCTGGTTGTTGCT 46893 28 100.0 32 ............................ AGCATCTGCATGGTGCCCGTGGTCTTAACAAG 46833 28 89.3 0 ..C.................T...C... | C [46810] ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCTGGGGTCGTGAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCTCGTAAGAGGTTACGGATTTTTTTGTTTGTGAGGTGGGGCGGTAAAAACCCTATTTTTGAGGGCGAAGGTAATTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTTGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //