Array 1 1739296-1741009 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134270.1 Escherichia marmotae strain NCTC8196 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1739296 28 100.0 33 ............................ ATCTGGAGGCGGTTACTCTGTCCGCGTCCACGA 1739357 28 100.0 32 ............................ TCCGCGCTTGTTATAATCCACATCAAGATCGA 1739417 28 100.0 32 ............................ AATAGGGCTGAGCAAAGCCTCCAAGCTGTCCA 1739477 28 100.0 32 ............................ GAGGGAATACGGGGAAACGCGGTAACACCTGT 1739537 28 100.0 33 ............................ GCAATGCGCGTCGCATGTGGCGGTGGTGGGCAG 1739598 28 100.0 32 ............................ GTTGTGCCCCAAGTCTGAAGGGGCGTTATGTT 1739658 28 100.0 33 ............................ GCAATGCGCGTCGCATGTGGCGGTGGTGGGCAG 1739719 28 100.0 32 ............................ GTTGTGCCCCAAGTCTGAAGGGGCGTTATGTT 1739779 28 100.0 32 ............................ ACGATGTGATAAAACTCATTACTCCCTGTGCA 1739839 28 100.0 32 ............................ ACTTGTTCAGCTCACATAAAGCTGGCGAGCCG 1739899 28 100.0 32 ............................ AGCATCCTGTGCCACTGACGCCATCGTTTCAG 1739959 28 100.0 32 ............................ ACTCAGGGTGCCGCTGTGCAAAGCATAATAAA 1740019 28 100.0 32 ............................ AGTTTCAGTAGCTCAGCCTCAATCCTCCCCGC 1740079 28 100.0 32 ............................ TGTCGTTTCGTGAGAACGTCTACGACGTAGAA 1740139 28 100.0 32 ............................ GCTAGCAGTGACAACGTAAACGCCGGGCAGGA 1740199 28 100.0 32 ............................ GCAACGGCTTCGGGCAGGTCGTGCGCCTGTAC 1740259 28 100.0 32 ............................ CCTCAATCGAAAACACGCCGTTACCGTGGTTT 1740319 28 100.0 32 ............................ CGGATTTCTGCGCGAAGATTTTTAATTGCTGC 1740379 28 100.0 32 ............................ AACAAACGGCGTTTCATAAACCCGCCCGGCGT 1740439 28 100.0 32 ............................ AGCAACAAAAAACCTGATGACCGGATGACACA 1740499 28 100.0 32 ............................ GCGCCACCCAGGTGGCCCGACACCGATTGAAT 1740559 28 100.0 32 ............................ CACATATCTGATTAAATATCACGACACGGCGA 1740619 28 100.0 33 ............................ ACTTCCATGTGGCGGTTTTGCCACATCCATAGT 1740680 28 100.0 32 ............................ ACGGGCGCGGCGGCAGAGTGTCCGATTAAATA 1740740 28 100.0 32 ............................ AGTTCTCGACTGATGCAACTCATTGCCCCCTC 1740800 28 100.0 33 ............................ GACAGCAAATCACCGCGTAACCAGATTTGACGA 1740861 28 100.0 32 ............................ TGTACCAGCACTTGTCGCAGCGGGTGCTACGG 1740921 28 100.0 32 ............................ GCACTTATGGCGAGTAACAAAGGTTGAAATGT 1740981 28 92.9 0 ....................T...C... | C [1741004] ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCTGGGGTCGTGAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCTCGTAAGAGGTTACGGATTTTTTTGTTTGTGAGGTGGGGCGGTAAAAACCCTATTTTTGAGGGCGAAGGTAAGTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGGGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTGGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1755267-1755595 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134270.1 Escherichia marmotae strain NCTC8196 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1755267 28 100.0 32 ............................ AGATCCAGATTTTTATCACGCGATTTCAGAGA 1755327 28 100.0 32 ............................ AATAGGGCTGAGCAAAGCCTCCAAGCTGTCCA 1755387 28 100.0 32 ............................ CAGCGCTGGCGGTGGATGATGCGGGGTAAGTT 1755447 28 100.0 32 ............................ TGAACGGCACATTTTTGCGCCTCTGGTAGAAC 1755507 28 100.0 33 ............................ TAAACAGCAACTACTTTAAGATTGAAATATTAC 1755568 28 89.3 0 ....................T..TT... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGTGTTTTTTATTTAAGGCGCATTAATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACTACATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGTCGTATGCGTTCTGATCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACGTCTCGAAAAAGGGTATGAACCTATGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : AATCCACACCCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //