Array 1 159-1235 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHYL01000007.1 Helicobacter sp. 11-8110 NODE_7_length_63701_cov_15.1003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 159 37 100.0 39 ..................................... TTCTTTATTAAGTCAGATGTTAAACTCGCACTAACTTTT 235 37 100.0 39 ..................................... TTCTTTATTAAGTCAGATGTTAAACTCGCACTAACTTTT 311 37 100.0 34 ..................................... TTGTAGCCGCGGTACACCGCAAATACGTCCCCTA 382 37 100.0 36 ..................................... CATACTTCGCTTTTTTCGCAAAACGAAGTGTATGAT 455 37 100.0 37 ..................................... GCAAGGGTATAACCTAAATCTTCTTGTTTACCAGTAA 529 37 100.0 34 ..................................... TCTATTAGCCCATTGTACAAATTGTTCGTGGTTT 600 37 100.0 36 ..................................... TATATTTTGCTACGCTCAGATAACTTACGAAACGTC 673 37 100.0 37 ..................................... AATTGTTCATGGTTTTCTCTAACCATATCGTTGTGAA 747 37 100.0 40 ..................................... TTACTAATGTAATCTAATAATTCTTTTTCTGTAGTATTAT 824 37 100.0 36 ..................................... TTAGTTGTTCTTCTGTAGCTTTACCACTAATGGTAA 897 37 100.0 42 ..................................... ATTCATCGTAATCTTCTTCTAGATAACGGTTATAACTTTCTA 976 37 100.0 39 ..................................... TAAACTTATCATTATCGTACCTTATTATATTACCTAAAT 1052 37 100.0 38 ..................................... CTTACCGTGGACTTCTAATAACTTTACTAATCTGTTTT 1127 37 100.0 35 ..................................... CTTGATAAGTTACAATCTATTATACTTTTATCTCT 1199 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 100.0 37 ATTAACAATATAAGACCCGATTAAAGGGGATTGAAAC # Left flank : TCATTGTCAAAACCATGAAGTTACTTTTTGAAAATACCATTATATTTGCGAACTTTTTATAATAAAGAAAGAAAAAGTAAGTATTTATAAGACTTTTAGCAAAGTGAATTAATAATACTTGTTTTATTTCTCTATGATAAAGAATACTATTATTGGCTA # Right flank : CGACTTTTGCGACATTACATTCAAAGCTCATAGCCTTAGAGCCATTAAGCATATCAATCGCAGTTTTTAACCTCTTTGTATCCCATCTATCTAGGGGTTGATTAAAGCTCTTACAATACTCAAGCATCCGATCCATATTTTCTACTTTTCTTACATCCCAGCACCCAATAGGCTCGTTAAAGTCTTTACACAAGCAAAACATAGAGCTCATATCTTTTACTTTTGAGACACCCTAGCATCCAATAGGGATATTAAAATGCTTACATCCAGCAAACATGCCTTCCATAGTAATAACATTACTAGTATCCCAGTATTCAATACCACTAAAATTTTTGCGCTTTACATCCTTAAAAAGCGCTCGCATATAGCTAATCGCACTTGTATTAATGTCGTTTAGATAAATGTCATTATCTTTTACTAGCTCTCTTAACTCAGCTCTATTTTTTGGCTTGATTTTTTCATCTCTTAAGCTCTATATAGCTATTTTGCTAAAATTCTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAACAATATAAGACCCGATTAAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 159-931 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHYL01000001.1 Helicobacter sp. 11-8110 NODE_1_length_587237_cov_14.8757, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 159 37 100.0 37 ..................................... TTTTAACTTCACCAGCAACTTCAGCTTCTTGTCTGCT 233 37 100.0 36 ..................................... CTATTTCACTAACAGCTCTATTTGCCTCTTTTACTT 306 37 100.0 40 ..................................... ATAAGTATTATCCATAACATTTTAACTCCTTTATAATGAA 383 37 100.0 39 ..................................... CTCATTAGACATTTCTATATTTTGTTCTTTTACTTTATT 459 37 100.0 35 ..................................... CAAAGCGAAGTGTGTGATGAGCATCATTGCCTACC 531 37 100.0 36 ..................................... AAATACATGTAAAATAATTTACCTAAAATTTCTTTT 604 37 100.0 38 ..................................... GCTAATTGTAATCCTAGTATCACCTTCAATCTCTTCTT 679 37 100.0 36 ..................................... TCTATTCATACCATTACACTCTATTTTGAGTGTAGC 752 37 100.0 37 ..................................... TTATTTCTGCAGCCACCCTTTCAATGTAAGCGTTAAC 826 37 100.0 32 ..................................... ATTTTTATCGTAAAGCCCTGTGAATAATTCTA 895 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 99.8 37 ATTAACAATATAAGACCCGATTAAAGGGGATTGAAAC # Left flank : TCATTGTCAAAACCATGAAGTTACTTTTTGAAAATACCATTATATTTGCGAACTTTTTATAATAAAGAAAGAAAAAGTAAGTATTTATAAGACTTTTAGTAAAGTAAATTAATAATACTTGTTTTATTTCTCTATGGCAAAGATTGCTATTATTGGCTA # Right flank : TCTATTACTAATTATCTATATTACAAAATGTAGCAAACCAAATTCGTTTTAGTCCCTTCTTAAATTTCTTTATGGTAAAATAATTTTCTCTTCATAGATAATACACTCGCTGTTTTAGTCCCTTCTTAAATTTCTTTATGGTAAAATGCACCTTCCATTGATACATTTGCCACTTTTGTTTTAGTCCCTTCTTAAATTTCTTTATGGTAAAATATAATCGCATTTTGTAGCACTTTTGCTTAAGTTTTAGTCCCTTCTTAAATTTCTTTATGGTAAAATCTCCAACTATCTTGTATGTTGGATTTCCAAGTTTTAGTCCCTTCTTAAATTTCTTTATGGTAAAATTAAACATTGTTATAAGTAGGTCTATGAATGGTTTTAGTCCCTTCTTAAATTTCTTTATGGTAAAATTTATGCTACAGAAATAAACGATTTTGTAGCGTTTTAGTCCCTTCTTAAATTTCTTTATGGTAAAATAGATACCCCAAAAACCAAGAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAACAATATAAGACCCGATTAAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 976-1407 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHYL01000001.1 Helicobacter sp. 11-8110 NODE_1_length_587237_cov_14.8757, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 976 36 100.0 30 .................................... AATTTTCTCTTCATAGATAATACACTCGCT 1042 36 100.0 30 .................................... GCACCTTCCATTGATACATTTGCCACTTTT 1108 36 100.0 30 .................................... ATAATCGCATTTTGTAGCACTTTTGCTTAA 1174 36 100.0 30 .................................... CTCCAACTATCTTGTATGTTGGATTTCCAA 1240 36 100.0 30 .................................... TAAACATTGTTATAAGTAGGTCTATGAATG 1306 36 100.0 30 .................................... TTATGCTACAGAAATAAACGATTTTGTAGC 1372 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTAGTCCCTTCTTAAATTTCTTTATGGTAAAAT # Left flank : CGATTAAAGGGGATTGAAACCAAAGCGAAGTGTGTGATGAGCATCATTGCCTACCATTAACAATATAAGACCCGATTAAAGGGGATTGAAACAAATACATGTAAAATAATTTACCTAAAATTTCTTTTATTAACAATATAAGACCCGATTAAAGGGGATTGAAACGCTAATTGTAATCCTAGTATCACCTTCAATCTCTTCTTATTAACAATATAAGACCCGATTAAAGGGGATTGAAACTCTATTCATACCATTACACTCTATTTTGAGTGTAGCATTAACAATATAAGACCCGATTAAAGGGGATTGAAACTTATTTCTGCAGCCACCCTTTCAATGTAAGCGTTAACATTAACAATATAAGACCCGATTAAAGGGGATTGAAACATTTTTATCGTAAAGCCCTGTGAATAATTCTAATTAACAATATAAGACCCGATTAAAGGGGATTGAAATCTATTACTAATTATCTATATTACAAAATGTAGCAAACCAAATTC # Right flank : TAGATACCCCAAAAACCAAGAAATTCAGGGATTTAAGTAGAAAAATTAGTGAAAAATATGCTAAAATTTTGCTAGAGAAATTTAAAAAGGGACTAAAATAAGTGGTTTTCGGTAAGCCACGCAGGATTAAAATTCCTTTTAAAACCGAATCTTTATTTTATGCTTTCTTTAGAATATTTATAATCTTGTGTATTTTCATTCCATTCAAAAAGCGTTAAGTTTTTGTTATTATTTATTTGCTCATTGAAAGATGCTTCTCCTAAAAGTATTTGCATATTATCAAATTGCTTTTCTGTTATTATTAAAACCCTTATATTTCCACAAGGTGGTAAAATCTTTTCTATAGATTTTATGGTGCTTTTGGCAGACATTAACCCTTTGCAGATTCTTACATAAACGCTAAATTGCATCATAAAAAAACCAAGCTTTATTAATGCGTTTCTAAATTTTGTAGCATTTTTTTGATCTTTTTTGCTTTTTGTTGGCATATCAAACATTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTCTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //