Array 1 19252-18412 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QQFN01000019.1 Neisseria meningitidis strain M37446 M37446_S3_cleaned_ctg_7652, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                           	Insertion/Deletion
==========	======	======	======	====================================	==========================================	==================
     19251	    36	  97.2	    30	........G...........................	GGACGGCGGTTCTAAAATATGAAAACTCAA            	
     19185	    36	 100.0	    30	....................................	AAACTCAACGCATCTAACATAGTTCACACT            	
     19119	    36	 100.0	    30	....................................	GGTCAGATTATAATAACGTTGAGCGCGTGT            	
     19053	    36	 100.0	    30	....................................	CGTAACCGGCAAGGCTTATTTGTCCAACGA            	
     18987	    36	 100.0	    30	....................................	CTGGAAGACTGGTAAGAAACGAGATGCACA            	
     18921	    36	 100.0	    30	....................................	CGATTTACCACCCATAAAACCACCTCAAAA            	
     18855	    36	 100.0	    30	....................................	TAATTTGCGTTTCGTGTCGCTCATAAACCC            	
     18789	    36	 100.0	    30	....................................	CGTAACCGGCAAGGCTTATTTGTCCAACGA            	
     18723	    36	 100.0	    42	....................................	GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA	
     18645	    36	 100.0	    30	....................................	ACAAATCAATACCATGAAAACCCCATGCGC            	
     18579	    36	 100.0	    30	....................................	AAAAACTTTTTAGGGGGGTCGGAAAAATGT            	
     18513	    36	 100.0	    30	....................................	AACCCATTACGCCACAAGTATTTCACAGCG            	
     18447	    36	 100.0	     0	....................................	|                                         	
==========	======	======	======	====================================	==========================================	==================
        13	    36	  99.8	    31	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                                          	       

# Left flank :   GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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