Array 1 122836-121526 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDCB01000002.1 Escherichia coli strain VRES0356, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122835 29 100.0 32 ............................. CATTGAAAACATTGCCTTTATTTTATTTTTTG 122774 29 100.0 32 ............................. CCCTGATAGCGTCCAGTTGAATGCGCGCCCGC 122713 29 100.0 32 ............................. GCAGGCACGGGCAATATCAGACTCGGTCAAAG 122652 29 100.0 32 ............................. CGTCTGCATACCCCTGTTTTTGCTCTTAGCCA 122591 29 100.0 32 ............................. GGTGGCGAGCTGACGGAGTTGGTCTACCGGTC 122530 29 100.0 32 ............................. CTCGGTTGTTTTCATATTACCGGCCTGCCACT 122469 29 100.0 32 ............................. ACAATATCCCGGACCGGGCGCTGATTTAGTCA 122408 29 100.0 32 ............................. ACACCCCGCTATCTGCGCGGCTTTACGAGATA 122347 29 100.0 32 ............................. CGTAAACGCCCCGTCGCCATTAATTTCGGGGT 122286 29 100.0 32 ............................. TGGGATGAGCAAATAACGTCGTTTCCTAGAAA 122225 29 100.0 32 ............................. CCGCCGTGCCAGTGATCCTCATACGGCCTGTT 122164 29 100.0 32 ............................. AACGTTTTAGAAATTGATGCTATTTTGCGAGG 122103 29 100.0 32 ............................. CGGGCGACTGGGGCGGGTTTGTTAATCTCATG 122042 29 100.0 32 ............................. CACTGCCCGCAGTGTCAGCCGTACAGGCGATC 121981 29 100.0 32 ............................. GACTATCGCGGACTGCTGAAATCAACCGGCGA 121920 29 100.0 32 ............................. TTAACGCTCTATAAACCGTCCGTTTAATACTC 121859 29 100.0 32 ............................. AAATTAAGAACGGCGTAAACGACGGCAGCATG 121798 29 100.0 32 ............................. GTGATGATTCAGAGCAGACATTAGCCCGCGCT 121737 29 100.0 32 ............................. AGTTGAGCGTCTACCAGTTGATTCGGGATATT 121676 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 121615 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 121554 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTTGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCCTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 149115-148537 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDCB01000002.1 Escherichia coli strain VRES0356, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 149114 29 100.0 32 ............................. ACGTAACAAAACAACAGCAAAATATTATCGAC 149053 29 100.0 32 ............................. GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT 148992 29 100.0 32 ............................. TTGATTTTGGTCCGAAATCTCCGGCACAAACA 148931 29 100.0 32 ............................. GCAATTAATTTAGTTCCAGATGCTGCGAAAGA 148870 29 100.0 32 ............................. TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA 148809 29 100.0 32 ............................. AATGATTGATATAAATCTGTGTACGGTGTCCG 148748 29 93.1 32 .........G..C................ CTAGGATAAATTAAAAGACAAAATTGCAGCAA 148687 29 93.1 32 .........G..G................ GAGCGACCAGTATCAAGATCGACAGGTTTTGC 148626 29 93.1 32 .........G..C................ ATCGATATGTACGTTAGCGAGGGGATCACGCA 148565 29 86.2 0 .........G.AC...............A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.6 32 GAGTTCCCCACGTCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAACCCTTAAACCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCACGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //