Array 1 39746-39572 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUBZ01000112.1 Herpetosiphon llansteffanensis strain CA052B NODE_48_length_39869_cov_27_3319_ID_4236, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================================ ================== 39745 27 100.0 48 ........................... ACTTTCGCCGGACGGCAGCAAGCTCGCCTACTCCGTGAGTTTTAAACC 39670 27 100.0 45 ........................... AAAAACTATCTCCATGTCCACGGCCCAATTGTTGGGTTTTAAACC 39598 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================================ ================== 3 27 100.0 47 CCTGGTAATCGGGGCGATACTTCCAAG # Left flank : AGCACAACGGGCGGTGAGGCGGGTCTGCTCACAAAAAAACCACGCACCAGCGTGGTGATTGGTCAGCGGCGGCGCGGATCAGCGAAAAATCCCGTCAAAACCTCTCAGGAATTCGTCCAGCCC # Right flank : TCCTCTGTGTCCACTTTTGCAAATGAGCCAACTCCCTGAGCCACATTCAACCCTGCCAATTGACCACATATTTGTATTATAAAGAGCTGCATAAAAATTATGTCAAATAAAGAGTAGTTCATTCCGTTGATGTGTCCATTCTATCAACCCTGTCAATCATCTCCATTCCCGCTTTCACCTTGCGCACGGTATTGACCGCCACGCCAACCGCTGCCGCCGTCTCGCGCAGCGACATGCCTTGCTTGAGACATAGCATAATCGCTTGGCTACTCGGCTTGGCCAGCAACACATCGTTCGCCTGGTACGAGCCACGCGGTCGGCCAACATGCATACCCGCCTGCCGCGCCTCCTCCATGCCTGCCTTGGTTTGTTCGCGGTGATAGGCTATTGCGCTACACGTTGCGTAGCGATGTCCTGCTCCAGCCGCGCCCGAACCATCGCCTGCATGGTCGGTGAAGGCATGCCAGCGAGGATCGTTTCTTCAACGCTCGTTAAGACCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGGTAATCGGGGCGATACTTCCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 33078-36827 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUBZ01000119.1 Herpetosiphon llansteffanensis strain CA052B NODE_54_length_36940_cov_28_5136_ID_4248, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 33078 37 100.0 38 ..................................... CGCGCTGCGCTTGCTCAGCTAAGGCCCGCTTAATTGCC 33153 37 100.0 41 ..................................... CGGAAGCCCATGTGCAAGCCCTTCGTGATCGGCTTTGTTTA 33231 37 100.0 40 ..................................... AAAAGCCATTTTGACCGCTGAACAAGCCCGCTTGAATGGC 33308 37 100.0 38 ..................................... ATGACGGTTAACTACAAGCCGATTCAAGGGTATACAGG 33383 37 100.0 38 ..................................... CCATTTGATAACTCATCGCGCAGCATCTTCAATTGTCG 33458 37 100.0 34 ..................................... TTATTGAGTAGCGAAGCATTTAATACTCAAGCTA 33529 37 100.0 39 ..................................... CAAGCAGGCGCGGCAAGCCCAACCGCACTAAGTTATACC 33605 37 100.0 38 ..................................... ACAAAGATTGAATCTGAAGCTAAAACGTATTATGAATC 33680 37 100.0 44 ..................................... CTTACTTGATTACGACAAATGTACACAAGCAGTTTTTTCATTGC 33761 37 100.0 40 ..................................... CGTGCCTGCAACCCGCTGGATAAGACACTGCTGCATCTGC 33838 37 100.0 38 ..................................... GGGGTAGACCAAGCCGCCAGCCAATAAGAGGCCAAACA 33913 37 100.0 40 ..................................... GTTAAGCATGCAATGATTGATCGGTGTGTTGAATTAATAT 33990 37 100.0 37 ..................................... TAATTGAAGCTCGATCTTACGCTCGGCTTTAAATTCC 34064 37 100.0 36 ..................................... GTATGTCATGGTTGCTCGTATGCTAAATACAATAAT 34137 37 100.0 33 ..................................... TCAGACAAGCCTGTTAATGCTAGTCCATGATCA 34207 37 100.0 42 ..................................... TTAACACGATTGACCTATCCGATAAAGCGCGTAGACTATTAA 34286 37 100.0 37 ..................................... TTCACTCTTGAGGAAACCCATCGCCATGGCTTGCTCT 34360 37 100.0 40 ..................................... ATTAATGAATTTCGTATGAGAACCGATGCGTTGATTGAAT 34437 37 100.0 39 ..................................... GTATTTCAACCATTAAACATTCAGCACGATTCGCCTTAC 34513 37 100.0 39 ..................................... ATATCTTCAAATGGTAATTGCTTGTTATATTCACAATCA 34589 37 100.0 37 ..................................... ATACGAGCTTGAGAACGCATTAGCACCATGCTACAAG 34663 37 100.0 40 ..................................... CCTTTTGATTCTGGTATTGGATATATCGCATGACATGCAA 34740 37 100.0 42 ..................................... TTAACACGATTGACCTATCCGATAAAGCGCGTAGACTATTAA 34819 37 100.0 37 ..................................... TTCACTCTTGAGGAAACCCATCGCCATGGCTTGCTCT 34893 37 100.0 40 ..................................... ATTAATGAATTTCGTATGAGAACCGATGCGTTGATTGAAT 34970 37 100.0 39 ..................................... GTATTTCAACCATTAAACATTCAGCACGATTCGCCTTAC 35046 37 100.0 39 ..................................... ATATCTTCAAATGGTAATTGCTTGTTATATTCACAATCA 35122 37 100.0 37 ..................................... ATACGAGCTTGAGAACGCATTAGCACCATGCTACAAG 35196 37 100.0 40 ..................................... CCTTTTGATTCTGGTATTGGATATATCGCATGACATGCAA 35273 37 100.0 39 ..................................... GTATCAAAAGATTTATACGGTCATCCGTGGTGCGAATCC 35349 37 100.0 39 ..................................... TGTCCGCAGGATCAATCGACACACCGATTAACTCTGTAT 35425 37 100.0 40 ..................................... TCAAGCTCGCTGTTGAACGTCTCACGCGCCGTCCACGTAT 35502 37 100.0 40 ..................................... CCATTTATTCGCTGGCTACGAATTGCTTGGCGTGCAAGAC 35579 37 100.0 38 ..................................... ATCTCAGCTCGCCTTCACGCACATACAGTTTGAGATGC 35654 37 100.0 39 ..................................... AAACAACGAGAGGTCACTATTACGGCCTCTCCCTATGCC 35730 37 100.0 41 ..................................... TGCCACTGGTAGTATTCCAGCCCCAACTACCTGATTCGGTC 35808 37 100.0 37 ..................................... TTGCTACCGCGCTCACACCAGCTTTGATAGCATCTGC 35882 37 100.0 38 ..................................... CAAGCACCGCCTCGGCGCTCTGCAATCGTTTGAGGCAA 35957 37 100.0 38 ..................................... CCGTTCACCTAAAGCGTGGGCAACTTTCATGCCCATAG 36032 37 100.0 37 ..................................... TCCATATCTTACTCCGATTCATCGATGCCAGCAATTG 36106 37 100.0 41 ..................................... TTCATACGTGAATGTTTCCACTGATTTATACCTCAAAAATA 36184 37 100.0 37 ..................................... TCAACAGGCGCAGCCCATGAGCCAAACGTATCATTTA 36258 37 100.0 38 ..................................... ATAAAAACAGGCCATGTCATAACGACAAAGCCTATTAT 36333 37 100.0 41 ..................................... TCAAATCCTCACGCCATGCCAGTAAGCGGCGTTTCAAGTGT 36411 37 100.0 39 ..................................... CGCCCAACGAGGTCTTTGACCAAATGCAAGGCTATGTGG 36487 37 100.0 41 ..................................... ATTTACTCTCATTTTTCAGTTGTTAAGGTGCTGGTAGTGCC 36565 37 100.0 39 ..................................... TCATCTTTGCCTTCATCAGCTAATGCCGCTTGAAGTTCA 36641 37 100.0 37 ..................................... GAATAAAAACGGGTCGCGTGTGCTGTGAACAATCAGC 36715 37 100.0 38 ..................................... GTATAGGAGTTGAGATGATTGATTTGCAAACGTATAAG 36790 37 83.8 0 .............................GC.GG.CG | A [36817] ========== ====== ====== ====== ===================================== ============================================ ================== 50 37 99.7 39 ATTCGAATAACCCAAATCCTCGTGAGGGGATTAAAAC # Left flank : TACTGAGCAGAGTTTGACGAGTACTTCCAGTCGACCCAGCACAGCAGCGATCAATCTATCGTTGGAAGAACTCCTAAAATCGTTGATTGAGCTGAATATGACTGAACTTCAGGCAAGTTTGCGCCAAGAATTTGTGGCGGGCTATACAATTGTTTCGATTCACCATAATCATGCCATGAGCGTGCTTGAAGGCCATGTCGCAATGTCGCTGATTACAACCATGACCGTTGCTGATCATAAACCAGAATGATGGTATAATGCAACCAAACCTTCTCCTCTCTCTTCTCTCCCACAAGCGACCCCCAGCGGGTCGTTTGTGGTTTTAGGGCCTATGTAGGGGCACAAATGTGTTTGCGAGCCGCGCGATCGCATTGGAATGGGCTAAAACACGATTTTAGGCTGATTTTTATGGGCAAAAAACGAGCAGAAATGAGTGTTTTTAAGCGGACCGCGCAAAGCACACGATTTAGGGCCTTGCAAAGCCATGAAAACTGGGGTAT # Right flank : AATTCCTGAGAGGTTTTGACGGGATTTTTCGCTGATCCGCGCCGCCGCTGACCAATCACCACGCTGGTGCGTGGTTTTTTTGTGAGCAGACCCGCCTCACCGCCCGTTGTGCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAATAACCCAAATCCTCGTGAGGGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 31355-38444 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUBZ01000117.1 Herpetosiphon llansteffanensis strain CA052B NODE_52_length_38554_cov_24_3466_ID_4244, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 31355 37 91.9 36 .G...............G.................T. TGCCCGCAGCCCTTCGCATCGTACCGCTAGCGTCAA 31428 37 94.6 35 .................G.................T. ATATTCAGGATCATCGGCAGGTTGCTTGCTTGGTT 31500 37 94.6 36 .................G.................T. GGTGATGGTCTCAGTAATAGAGCTAATGCCCGCCTC 31573 37 94.6 38 .................G.................T. CTGATCGGATGGCTCGTCCATGATGAACCTCTGGTTGA 31648 37 94.6 36 .................G.................T. CTGGACGCTCACGCTTGAGGCGTTTATGCATGTCAA 31721 37 94.6 36 .................GA.................. TATCGCAGCGGCCCTGCGGCGCTGGACACAAAGACC 31794 37 97.3 36 .................G................... TAAGTCTCAGTGATGTGGCCGACGCTGCCTATAACT 31867 37 97.3 34 .................G................... CTGCGTCCAACCAGCCCAAAAAGGCTAGTTGACA 31938 37 94.6 37 .................G.................T. ATGCGATCCTGATTACCCATGCCCACATTGACCACAC 32012 37 94.6 36 .................G.................T. TGGAGCATCAGATGGAAGGTGATCGCAAAGTAAGCG 32085 37 97.3 36 .................G................... CAAGGTAGCCATCGAGCAGATTCCGATCAAGCCGAT 32158 37 97.3 37 .................G................... GCGCGGCATGGATGATTGCTAAGCCGATCAAATACGA 32232 37 97.3 34 .................G................... CCGAGAATGGCGGCGTTGATACGTGGCAATCCTT 32303 37 97.3 35 .................G................... CCGTCACAAGTCTTTCCCAACATCAAACCCAAGGA 32375 37 97.3 36 .................G................... AGCCACAGCCCACACAGGCCAACCGCAAAAGGAGGT 32448 37 97.3 34 .................G................... CAGCTTGTTTATTTGGTTATTCATGTGGTGATAT 32519 37 97.3 34 .................G................... GTACATAGTTCTATACTATCCTCTTGTTTCTATA 32590 37 97.3 36 .................G................... TCCCAGCGCTGGCGGTCGGCTCACCCTCGTCATGCT 32663 37 97.3 37 .................G................... CAAAGCTAACGCTTCTGCAAGTGGTTCGCAGACGCGC 32737 37 97.3 36 .................G................... AGCACAATCGGCAAACTATCACTCGTGCCATCGAGC 32810 37 97.3 36 .................G................... CCCTAGTGAAATCCCGTTGGCCACATCATTCTATTA 32883 37 97.3 35 .................G................... TTCGAGCGCTGTAGACACACTCACGCGGTCATACT 32955 37 94.6 37 ............A....G................... AAGGGATCATTGTTTCGTGTTGCCTGCACCATATGCA 33029 37 97.3 35 .................G................... AGGCGGCGGCCTGCAAACCACGGATGTATCAACAT 33101 37 97.3 35 .................G................... CGAATTTCAATTCATCGCCCGGCCCACGATGCGAT 33173 37 97.3 36 .................G................... CAGCGTACTCATAGTTAGCGTGGCCCCGCAACGAAG 33246 37 97.3 36 .................G................... TATCGCGATATTGTTGATTGATAATGCCCATAAACT 33319 37 97.3 36 .................G................... CGCTTGTGGCGAAGATGAGCAACATGAGCACACCAA 33392 37 97.3 35 .................G................... GCCCAGCAGTCTTTTGAACAACTAAAATGGTGTAA 33464 37 97.3 35 .................G................... GCCCAGCAGTCTTTTGAACAACTAAAATGGTGTAA 33536 37 97.3 35 .................G................... TGACTCAAGGCCAGCACGCGCGCAGCACGTGGCAA 33608 37 97.3 34 .................G................... ACGCTGGCCGCTGCCGATGGCAGCACAATTCCGT 33679 37 97.3 36 .................G................... GACCTGTTGATCATCGATTATCTGCAACTCATGCAA 33752 37 97.3 35 .................G................... GTGCCCGTTTCGGGCTATAGCGAAGCAGTGACCGA 33824 37 97.3 38 .................G................... CAAAGGCACGCATAAGCGAGACATCATCCGTTGTCAAT 33899 37 97.3 35 .................G................... ATCAACTTCCAACGTGCTCAAATCCAAATCATAGC 33971 37 97.3 36 .................G................... CGCTGTTCGTTTTGATGCTGTACTGCAAGCCGTCTA 34044 37 97.3 38 .................G................... CTGATGATCGTGGCTTCAATGCGAAGTCTGCCACGAAA 34119 37 97.3 35 .................G................... GTCAAAGTCAAGTTTTGATTGAGATCGAGATCAAG 34191 37 97.3 35 .................G................... CGGCCAAACTTTTGTATGAATGGCATGATAGCCGT 34263 37 100.0 33 ..................................... AATCAACAGGCGGCAAAATCACATCGTCAACGC 34333 37 100.0 35 ..................................... AGTACTACACCGAGCAAGAATTATTAGCCAAAGAA 34405 37 100.0 36 ..................................... TCATACGCGGCGCGAATCCAAGCGTTGTCCATCTTG 34478 37 100.0 36 ..................................... AACGCGACATTCTGCCAACGATTGAGCATGAGCGGC 34551 37 100.0 33 ..................................... CAGGCTACAACGCTAATGCAATCTATGGCGAAA 34621 37 100.0 35 ..................................... TGCCCGCTGTACAAACCGTGCGATCAACCGCTGAA 34693 37 100.0 38 ..................................... ACATGTTAGTCCATGAAGGCGTTTTATCCCTTTGTAAT 34768 37 100.0 37 ..................................... CCCAGCGTTCTGACAATTCCATCATCTCGTTCAATTC 34842 37 100.0 36 ..................................... CCCAAGTGCGCTACTCAACTAATAACGGTACAACGT 34915 37 100.0 36 ..................................... GACGTGGAATCGCGAAATGGCGAACGCGATATGCTC 34988 37 100.0 35 ..................................... GACCTCAAAACCGAGAAACAAGAAAGTGCAATCAA 35060 37 100.0 37 ..................................... ACGAAATCACCCGAATCGTGGTCGCATTGCTTCGCGG 35134 37 100.0 36 ..................................... CGATGAGGCCTACATTGCCGGTTTAGAAAACCGCGA 35207 37 100.0 36 ..................................... GACTCGAATAGCTCGGTATAGCCAGGTATCAGGTAT 35280 37 100.0 35 ..................................... ATTGAGACATGCGTTGAGTGTGGTAACACCATTCA 35352 37 100.0 34 ..................................... GAAGTGACCGCATGGTTTACGGCAATCAAGGAAG 35423 37 100.0 36 ..................................... CCGATTATCTACCCGATGGCGAAAATAAGGCAACGT 35496 37 100.0 36 ..................................... CCGATTATCTACCCGATGGCGAAAATAAGGCAACGT 35569 37 100.0 34 ..................................... ATAAGCCTTCCATCATACGCTGATTACTCGCAGC 35640 37 100.0 36 ..................................... TAGGTAGAGGCTCAGCGGCTTCTCGGTTGGATGTTT 35713 37 100.0 38 ..................................... GTTCTAATTCAGGATTCATAGTTTTACTCCATAAAAAC 35788 37 100.0 34 ..................................... GGCTGCAAGGCAAAACCAACCAAGAGCCAAGCGC 35859 37 100.0 36 ..................................... CTTTGATAAGGATCGGAAGGCGATTCATGACATTCA 35932 37 100.0 36 ..................................... AGTTTCCGGCGGCAATGTCGCGCCTGCCGTCACCAC 36005 37 100.0 34 ..................................... CCCAACGCGAGATACAGCCCTTTGCGTATGCCTT 36076 37 100.0 37 ..................................... AATAGACTCAAAAGCGACGTTATTGATAAAATTGTTT 36150 37 100.0 34 ..................................... TATTCCCAATTGCGAGCGAGCGTCCCGCCACCTG 36221 37 100.0 36 ..................................... CACGATTCCTACACGCGGTCAAGCGGTTGTTTAATT 36294 37 100.0 33 ..................................... CTGATGCTTAAACATTTGGCGCTCCACAAGGAT 36364 37 100.0 36 ..................................... CCCTTGGCCGCGCCGCGCTCGGTTGCCTTGACGCCT 36437 37 100.0 36 ..................................... ATCTCGCGTGCGCTGCGATATTGCAACGTGTCTGAT 36510 37 100.0 36 ..................................... ATAGGAGAAATGCAGGCTAGGTTAGAATCAATCGAA 36583 37 100.0 37 ..................................... GCGCCAGTGATTCGCTCAATGAGGTGCTTGGTGACTT 36657 37 100.0 37 ..................................... ATATGGCGGCGAGTGATGGCAGCGGCGCATGGACGGT 36731 37 100.0 34 ..................................... CCTGCGCCTACACCAGTTGTCAACGATACTGAGC 36802 37 100.0 36 ..................................... GGAATCAAGAGCCGCATCTTCCCAGTGTTAGTTGTT 36875 37 100.0 34 ..................................... AAGCCACAATTCGCGCCGCACTTGGATTAGCGAA 36946 37 100.0 35 ..................................... ATCGACCTACTGAGTTAATGATGAAGGCGATCCAA 37018 37 100.0 35 ..................................... GGGTCAACGGTACCGCCGCCAACGCGGACTGCGTT 37090 37 100.0 36 ..................................... CTTTGGTTACGCGGTTGTATTCAATGGTGTAGTTTG 37163 37 100.0 35 ..................................... GCCAATAACATCGTGAACGCCACGCAGATCATTGT 37235 37 100.0 38 ..................................... AGATCAAGTGTTCGAAGCCCACTGGACTAGTAACAAGT 37310 37 100.0 36 ..................................... GCCCTCGCCCGCAGCCGCAGCGATGGGTAGTATCAA 37383 37 100.0 36 ..................................... CAAGCGTCCAGAACTCAATCACGCCACCGGTGATCA 37456 37 100.0 36 ..................................... GCGCATGTGTTGTGTGCGCTACAAGCACAAACAGAC 37529 37 100.0 36 ..................................... CAACCCCAATCGCCATAAACAAGTCAGTTTTTGACA 37602 37 100.0 36 ..................................... ACGATTTGATTTTGCTTTGCGTTACCCATTCAATAT 37675 37 100.0 36 ..................................... AATTCAGGATTCATAATGCTTTTACTCCATAAAAAC 37748 37 100.0 36 ..................................... GAAGTCAATAGCTTTGATTTATCACGATTGTGTGTA 37821 37 100.0 38 ..................................... CCTGCTGTAGCTCTTGCATCATGCTATGAAGTTGGTAC 37896 37 100.0 37 ..................................... TGGACGGCGCTCGATGCGAGGTCAATAAAGACCCCAA 37970 37 100.0 34 ..................................... TTCTTTGACATAGATCGTTTGACCAACCTTGTAC 38041 37 100.0 37 ..................................... TGATGAAATGCCAAAAGGCCTCGCTGAAAGTCAACAC 38115 37 100.0 38 ..................................... CTGTGGTCTGTGCTCGGCGTGGAGCTGGCCAACCGGAT 38190 37 100.0 36 ..................................... CGTGGAGCGGTGCTGCTCATCCCTCCGTTCATCGGC 38263 37 100.0 34 ..................................... ACCGAACTTACGAACAACCCGCAGCTGGTCAAGC 38334 37 100.0 34 ..................................... TGATGAGCTGCTGATCATCATCAAGCATGGATGT 38405 37 83.8 0 .......................T..G.GG.....CG | T,CC [38431,38437] ========== ====== ====== ====== ===================================== ====================================== ================== 98 37 98.5 36 GTTTCAGTATCCTCTGGACGGATCGAATAATTGAAAT # Left flank : ACACGCATTGTAAACGTGGCTAAAACCAAAAACAGCGATGAGTGAAATGCTCATCGCTGTTTCGGTTTATGTCAAATTAGGCTTATAAATATGACCATGGATTTGGTTGTTCAATGGCTTGAGGATTTTGCTGTGGCGCTGGCTGAGCACCAAAAGCAGCAATCATGCCAAATAATACGGCGGAGGTCAGCAGGTGATGTTTGATTGAACGCATTGGAAATTCCTTTCAATCGGCGTTTATTTCGATAGCCCTAGCCTAGCAAATCGCCGGGTGCGCTACTAGTGTAAAGGAAGGGTAGAGCAGTGTTAGAGCAGGTGTAAACCCCAAAAATCAGGGAATATGCTAGGCGATAGCAACGTAGTGCTGCTTAATATCGTCTAAACTATGGTACATGCTTAATCGAGGGAGATTTCCGATGTTACACATCATGCAAGAGATATAAGATGTTCATCAAAAATCTTTAGCTATGGATGGGTCGGGGATCGGGGGCTAGGGATCG # Right flank : TATAGACGAGTATGGTATCATACTGATACGGGAAAGGAATCCACCAATGACACGGCAAAAACCACGCACCTTTACGGCGGAATTTCGCCACATGGCCATTGATCTCGCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.91, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTATCCTCTGGACGGATCGAATAATTGAAAT # Alternate repeat : GTTTCAGTATCCTCTGGGCGGATCGAATAATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 29673-29190 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUBZ01000127.1 Herpetosiphon llansteffanensis strain CA052B NODE_61_length_29845_cov_26_0977_ID_4262, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 29672 37 100.0 38 ..................................... AATCCGGATCGCGTTGCTGCGGTCGGCCTTCTCACAGT 29597 37 97.3 39 T.................................... AAGCTAAAGCGAATGAACTATTTATGCCAATATTCGCTG 29521 37 94.6 39 .......T............A................ GAACTACACGATTGTTTATATCATTGAAAGAAATAATGA 29445 37 94.6 36 .......T............A................ TTTGGGCCGAAATTGGCAAAACACTAAAGCAGAAAA 29372 37 97.3 35 ..................C.................. ACCGAACGAAGTGAACGCGAACGCCAACACCAGCG 29300 37 100.0 37 ..................................... ACGAAATGACCTTTGTATTTGCGGGTCATAGTTGGCT 29226 37 91.9 0 ...T...T..........................G.. | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 96.5 38 GTTCATAGCACTGCCCCGACGACGAGGGGTTTAAAAC # Left flank : GTGGTCGGTGGTGTGCTAGGATGGGTCATGTGATCCTCCCCAAGGGTCATAGACAAATCAATGCGGCAATGGGGTCAAGCAAATCCATTGTCGCATCCATGATTGCATGATTTGTTTATACCAGGGGTTTAAAACTCAAAGTCTATGCGAGAATTAAATACCTGACGTGGT # Right flank : TGCAAACTCTAGCGGTTCAAGGAGTTAATATTTTCTTACCCCAGCCCTGCGCATGTGCGTGGGGCTTTCTGTTGTGGTTTTTTCATGACCTATTGGAAAAATAATTCGCTAGGTTACAGTGAAGAAGGATGCTTGTGGGCGAAACAATTGGGGCTATAGGCTTTTGGCTATTGGCTATGGGAAAACACGAACATAATCTCAAAAATCTGTGTAATCTGTGGAAAAATAATCATTCGTGGAATTCGTGGCGAACATTTAACGCAGAGGCGCAGAGCAATCAAAGGATGAAGGATGAAGGATGAAGCGCAGAGAGTATAAAATAATAATCAAAAAATCTGTGCCAATCTGTGTCTAAAAATAATCATTTGTTCAATTCGTGCAATTTGTGGCTAAAAATAAATCTATCTTCGTGGCTTTGTGGATCAAATCTTTGGCTCTGGGAATATAATCTCAAAAATCTGTGCAATCTGTGGCTAAAAACTTAACCTTCGTGCTCTTCG # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATAGCACTGCCCCGACGACGAGGGGTTTAAAAC # Alternate repeat : GTTCATATCACTGCCCCGACAACGAGGGGTTTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 3328-180 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUBZ01000126.1 Herpetosiphon llansteffanensis strain CA052B NODE_60_length_30428_cov_27_3891_ID_4260, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3327 37 100.0 36 ..................................... GTTCAAACAACTGATAGCGCTTGCCATCGCTGTATT 3254 37 100.0 33 ..................................... AATGTAGGCGGTTTTCAATGGCCAAGGACGAAC 3184 37 100.0 34 ..................................... AATCGACCATTGTGATTGAGGAAGATCATCGCGA 3113 37 100.0 37 ..................................... ATGGGCAACCAATGCAACGTTGTGGATGGGGCAATAT 3039 37 100.0 36 ..................................... GCGCTGCGAAAGCCTGAACCTCTATGACTACAACAT 2966 37 100.0 35 ..................................... GCTGCTGGAGCGGCGAACGTGCCGCTGGCAAGTAG 2894 37 100.0 36 ..................................... TCAGCAGCGCGGCCTTCCTGTGCCATCTGTTGCGCA 2821 37 100.0 37 ..................................... GCCAATTGGGCATCAACGTGTATGACTATGTGCGTGA 2747 37 100.0 37 ..................................... ACCTAGGAGGGGTATAGCACCATGGCAAAGCGTTTAG 2673 37 100.0 35 ..................................... AAGCACGGCGCTATGCGCAACTGATTGCATCTGCA 2601 37 100.0 34 ..................................... AGTTGAACGGCGCGGCCAATTCACCAATAACATA 2530 37 100.0 37 ..................................... TAGGCTTGAGAGTGAATGATAGGAACCTGATAGCTTA 2456 37 100.0 36 ..................................... GCGCTATCGCGAAGGCGAGACGGTCTATGTTAAGGA 2383 37 100.0 35 ..................................... TGTCAAAAACTGACTTGTTTATGGCAATCGGGGTT 2311 37 100.0 37 ..................................... TCCGCAATATCGCCAATCAAGGCGATGACAACAATAT 2237 37 100.0 33 ..................................... TTTTGGAGTGCCACCAAACCATGCATCGCCTTG 2167 37 100.0 36 ..................................... AACGCCTCGATCGCCGCGTTGTCTAATTCGTCTAAG 2094 37 100.0 36 ..................................... TCGGTTAGTAAGGTTGCATACTCCAGTGCGCCGTTG 2021 37 100.0 36 ..................................... GTAATTGGGAATACGTCGATAGCACAGGCCTTGCCG 1948 37 100.0 35 ..................................... AAAACGCGGTAGCTAGTGAGCTGATGGAAGCCATT 1876 37 100.0 34 ..................................... ATAGACAGGACTAGAGTTTATAGACATGGTTGAG 1805 37 100.0 36 ..................................... TTCACGGTTTCATCTTTTGAACAGTAATCAGCTAAG 1732 37 100.0 36 ..................................... AAGATGGCCTTGTCTATCCTGACTTTGATCCGGCGA 1659 37 100.0 33 ..................................... TGCTGAATGATTCAATTCTAATCAGCGAGCTAG 1589 37 100.0 34 ..................................... CAGGCATGACTCGCGGGCAACTGGAAGATGCATT 1518 37 100.0 34 ..................................... GCCAAGCGAGTGGACACATACAAACCTGCCGAGC 1447 37 100.0 34 ..................................... TTGAACGCATCAATGTGAAGGCCAACCCCGCGCT 1376 37 100.0 37 ..................................... ATGATGTGGTATTCGACACGATGTTGGACAAAATCTA 1302 37 100.0 36 ..................................... GCATTGTGGGCATGAGCTTGACGATGATTACTTGGC 1229 37 100.0 34 ..................................... ACATCTTCGACGGCGTAGAGCAAAGCAGTAGTGG 1158 37 100.0 36 ..................................... GTGTGACCGCCTGCTAGGTACGCCTTGTATTTGGCG 1085 37 100.0 35 ..................................... TAAGCAGGCTGACGAAACCCGTAGTCGATGGGCAA 1013 37 100.0 33 ..................................... GTCACGATCACCACACCTTCGATGTAGCGCTCG 943 37 100.0 35 ..................................... AAATGGCTGACGCTCATCGGGTCGCACGCGTGGCT 871 37 100.0 35 ..................................... AATCTTGCCACAGCACATAGCAGCGGTGGATGGTG 799 37 100.0 35 ..................................... AACCGCAGCGGCTATGGGCAGTATTCGTGGCGATA 727 37 100.0 36 ..................................... GTTTTGACAATCAGCCATTTGGGGTCAGCAAGCCAG 654 37 100.0 36 ..................................... CCAACGGGTGCATGGTCGTGCGCAGCGTGGATGGAA 581 37 100.0 37 ..................................... TATGTCAATTTGACCGATCAAGGCTTGCAAGCGGGGC 507 37 100.0 35 ..................................... TCGCCACCACGGCAACGCGGATTGACGCTACCCGC 435 37 100.0 37 ..................................... AATTGAAAGATGCGTTTGAAACGGACTTCGTCTTAAA 361 37 97.3 37 ...................T................. AAGGGTTTTGTTTTCGGTTTCGACACACGGTCGGATT 287 37 94.6 34 .T.................T................. AGTGGTACAGCAGGCACAAGGGCTAAATTAGTGA 216 37 94.6 0 .T.................T................. | ========== ====== ====== ====== ===================================== ===================================== ================== 44 37 99.7 35 AATTCAATTATTCGATCCGCCCAGAGGATACTGAAAC # Left flank : AAAGCCGGTTCGCCGTGGATTTAGCTATCTCTTGCCATTACGGAAGGCAGTTGAAATTCCATTGGGCCAACGGCTCTTGAATGATGTTGAGCGGAGCATTGAGCACATTCATCAGATGATTGCCCATGAAGCGATGCCACCAGCCCCTAAGCAACAGGCAATTTGCGTTAATTGTGAATTTCGCCGCTTCTGCAACGATGTGCTTTAGTTTTTTTTGCCCAATCCAAAGCGAAATTCGCAACTCGATTAATTGAGGGATGATTTTGGGCCATTTTGAGTGGTTAATCGTTTTGATGAGCTGATATAGCTGATTGCAAAGCCCTAACGCTGTTTCGCAACTCTCCCCGTTTTTTGCCCAAAATGCGAGTTGCGAAACATCCGTAGAATCGAGTATGATACCGTGAGTATTGAGCTAAAACTGAATCGCTACCGTTGCCGCTGCGGCCTAGAATGCAGCCTACGCAGGATTTACCTCGGCGCAAGCGTTTAGCAAATCGGCG # Right flank : CAACCTACTACCCGCCGATCAAGGGCGCGGTCATTCATTTCAATTATTCGATCTGATGTGGTCACGATTTAATGGACAATCGTTCTTATCCGCTCCACGCTGCTTCAATCATCGCGGGTGTTTGGTAGCCTAACCCCGAATGCAGTCGTTGGCGATTGTAAAAAATTTCGATATATTCGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTCAATTATTCGATCCGCCCAGAGGATACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 7607-113 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUBZ01000135.1 Herpetosiphon llansteffanensis strain CA052B NODE_69_length_23956_cov_25_9916_ID_4278, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 7606 37 100.0 46 ..................................... CCAAAGGACAAGCCTATGAGTACCGACCGATTAGCGGGGGCAATGA 7523 37 100.0 41 ..................................... GTCAACCACGCAGCGGCTTACCCGCCAGCGCTTGAGAATAT 7445 37 100.0 41 ..................................... GCTCTACCTTAACGCTTTACCACCAATCGAGGTTCCAATTA 7367 37 100.0 39 ..................................... GATTACACCCGCCGGATTCTTAAGCCATCGCTGTATGTG 7291 37 100.0 40 ..................................... TTACCATGGCTCCATAGCCACTCGGCGGCAGAACCAACAA 7214 37 100.0 38 ..................................... CTCAAAATCAAGAAGAAACAACAGCCTGTCCACGCTTG 7139 37 100.0 33 ..................................... GAAGGAAAAAGCCGCCGAGGATCGCGGTTTTAA 7069 37 100.0 36 ..................................... TTTCTGAACTGCCAAGACGCGCTAGAGGCGCACTAC 6996 37 100.0 40 ..................................... ATCAGCGACCGCCACCCGTTTCACTTTGGCAAGAATGGCC 6919 37 100.0 37 ..................................... GCCGTGGCTTGCGTTGCTGGCATCGGGCCGCAGCTGG 6845 37 100.0 37 ..................................... CCCGTGGCTTGCGTTGCTGGCATCGGGCCGCAGCTGG 6771 37 100.0 42 ..................................... CTTGTGCGTATCCCGATAGATGGCCTCCAACGGACGGTGTTC 6692 37 100.0 42 ..................................... CTTGTGCGTATCCCGATAGATGGCCTCCAACGGACGGTGTTC 6613 37 100.0 40 ..................................... ACATTCTCGCGGGTGGGATTCCGTGCCAACCGCACAGCGT 6536 37 100.0 42 ..................................... AAATCAACCTAATTATTTCTCCACCTTAACAATTTCATATCA 6457 37 100.0 37 ..................................... TCCATTGAGGCGCAATGGAAACGCCATTTCCGTTTTG 6383 37 100.0 37 ..................................... ACTATATGGCCTCGCTGCATGCGCCGTGCGTGTTGGC 6309 37 100.0 39 ..................................... ACACGCTGGCGGGATCAGGCATACAATGATAGCTCGAAG 6233 37 100.0 40 ..................................... CCCCATTTATTTGAGGTGAAATATGTTTTATCCATTTTCT 6156 37 100.0 37 ..................................... AAAGGAGCAACCAGTAGTATGCCTGAACAACTTATTG 6082 37 100.0 38 ..................................... TTATGGCACGCCGCATGATTCAACCCCAAACCAACAAA 6007 37 100.0 40 ..................................... GAAGAACTCGGTGTTTCAATGGGCCTCACCAAAACGGTTG 5930 37 100.0 37 ..................................... GACCGGACGTTGGTTGCTTCGGTTAGTCCGCGTGTGA 5856 37 100.0 39 ..................................... GCGACTAATTTCGCTAATCTCCTCCTGGCGTTTTTGGTT 5780 37 100.0 38 ..................................... ACAAATCCATCGCCATCGTCTGGGCTGTGCTTATTCCG 5705 37 100.0 36 ..................................... TGAAGTTCATCATAAAGATAGTAATCGAGCTAACAA 5632 37 100.0 40 ..................................... AGGCACGGTTTATTGCCCGAACAAAATTCATTCGTTTTGC 5555 37 100.0 42 ..................................... GTGAGCCTATCGTAAGGATATAACCACGGCTCATTGATGAAC 5476 37 100.0 40 ..................................... TTGTACCAAAGGCGCAAACGGCCAACCCCACGCCGAACAG 5399 37 100.0 38 ..................................... CATCCAATGCTGCATCAGGGGCCACATCAGGATTATAC 5324 37 100.0 39 ..................................... ATATAGCTGATGCAAGCTAAGAAATAGCGGCCTGAGTAG 5248 37 100.0 38 ..................................... GAACGCAACCGAGCAACCACACAAGCGTGAGCCGATTC 5173 37 100.0 38 ..................................... GGTATCCCCATATTCTTTTATAATCGCTGCCTGAATGG 5098 37 100.0 40 ..................................... ACGTTCGTCGATGGCGAGGAATGGTACCAGTGCCTGACGC 5021 37 100.0 37 ..................................... GCCACACACAGGCGATTTCTGGCATCAGTATTGAAAA 4947 37 100.0 35 ..................................... ATTCGAACATTCAATGATTTAGGTGGCGACTTTGA 4875 37 100.0 42 ..................................... GCTGAACTATCCGAGCTGGAGCAATTACGTGAAGCAAAAACG 4796 37 100.0 39 ..................................... GAATTACAGATGACTACCTTAATTTGGCCTGCAAAGTGG 4720 37 100.0 39 ..................................... CACCACGGCAAGCCACTGGCTCAATGGTGACTACATTAG 4644 37 100.0 38 ..................................... GATGTTCAGCTTCAATAAGATCCCACTTAATTTCATCT 4569 37 100.0 38 ..................................... AGTGTGTCCTGTTCATCACGGTCAGGCGGCAAATCACC 4494 37 100.0 39 ..................................... CTTAGCAAGCAAGAGCAAGTGGGAGTGCGGATTGTCTTT 4418 37 100.0 40 ..................................... GTTATCGGATGCTGCTCGCGCTTGGCTCAATGCGCTCTAT 4341 37 100.0 35 ..................................... TTATGAAGGCAGGACAAATCATTGGTCAACTTCGC 4269 37 100.0 40 ..................................... TTACCGCTGCTGGCCTTGCTGAAATTGCCCACAAGTTAGC 4192 37 100.0 41 ..................................... ACAATAAATCTGCTGAGCAAAAGTGGAGTACTATCATTGGC 4114 37 100.0 41 ..................................... CGTTTGAGGGTTTGGCCAATGCGTGCGCGGCTCTGGAGTTT 4036 37 100.0 41 ..................................... CGCTGAGCAGCGGGTTTCTGGCTTCGTGTGGCGGCGAGTGG 3958 37 100.0 36 ..................................... ATTGATGACTTGATCGAAGTCATCAAGGAAATTCAA 3885 37 100.0 40 ..................................... TTCGCGCACCGTGCTCAACATGGCCTGATAATCAGCAGGG 3808 37 100.0 40 ..................................... CGAAAACGCAAATCATCATTTTTGATCAGCGGTTCAATCG 3731 37 100.0 41 ..................................... ACGCATATAGCGTACTTCAAACTCACGAAGCCAGTACGTCC 3653 37 100.0 40 ..................................... CCACGAACAACACCACACTGTTTTGCCGAAGTGAGTCAAC 3576 37 100.0 37 ..................................... ATGGGGCCACCAAACGGTGGCCCCAGAGCAGGGTCAG 3502 37 100.0 40 ..................................... CCAGTCGATCTGGGTTGGGTTGGCCAGGTCATTCAGATAA 3425 37 100.0 39 ..................................... TTAATGTCGTTCATAATGGCCATTTCATCGTAGATCGTC 3349 37 100.0 40 ..................................... GAATTGGCTGGTAGCAAGTATAAAAAGCATGTAGCGGTGA 3272 37 100.0 39 ..................................... GCCACCGCCAAGCCTAAGCCTTGGAATAATGACACCAGC 3196 37 100.0 42 ..................................... TCACCGTCAACGCGTATACCATTAGCCGTAAAATGAACTGTG 3117 37 100.0 37 ..................................... ACCACGCGGTTGAAGTGACGCATAACGGGGTAACACT 3043 37 100.0 41 ..................................... ATTGTAGGGTTTGAACCGTGGATATGGCATGCTGTGTAGGA 2965 37 100.0 40 ..................................... TTGGTCAACATCTTTGGGTGTCCATGGCATTTCAAGAAAC 2888 37 100.0 38 ..................................... AGCGCGTGTATCGTGTGCCACGCAAGCTGTTACCCACC 2813 37 100.0 40 ..................................... GATTTGATGCGCGGCTCGGCAATCGCAATGCCTTCGCGCC 2736 37 100.0 37 ..................................... TGAGGGGGATGAATGTTTGATGCTCCAACCATGTAAA 2662 37 100.0 39 ..................................... GTAAGAATAAGTTGGCCTTGGCCAACATAGATGCCATTT 2586 37 100.0 40 ..................................... AGGAATTGCCGCCAAGATACACCAGATCGCCGCCGAATAT 2509 37 100.0 40 ..................................... GGTCTGGATTTCGGCACGCTCGATTGCATAGCTCTTGGTG 2432 37 100.0 38 ..................................... ATATTCCCATGTCCGCCCCACATCTGTCCCTGTTAGGG 2357 37 100.0 37 ..................................... GGAACGTGGCCCCACTCGGCCCGTTCAGTTGGAAGTA 2283 37 100.0 41 ..................................... TTCAAGGGGATGAATCATATATCTTGTTGGGCTTGGCCTTG 2205 37 100.0 40 ..................................... CCCAAGAAGCTGCGCAATCTATCGCAGACGAAGCTAGTGA 2128 37 100.0 42 ..................................... CTTGATATTCTTGGCCTACAAGCGTTATCGGCATTGAATACG 2049 37 100.0 43 ..................................... GATGACGCAGTGTATTGCGGATAGTGCTGTCGAGGTCGCAATG 1969 37 100.0 38 ..................................... CGATAGTTCTCTAAACGCTAAGATTCATTGAAGCGAAG 1894 37 100.0 38 ..................................... ATACAGGCTTGCAGCGCCCACAAGCCATACCTGATCTT 1819 37 100.0 39 ..................................... GCATAGTGGCTTTCTTGCCGACCGACTGATAACACTCCG 1743 37 100.0 35 ..................................... TCAATTTGCCCCAAGCATAAAGGCCGATCAATGCG 1671 37 100.0 41 ..................................... ACACGCGAGCCAATAGTGAAGATTGTTTCCTGTTGATGCGT 1593 37 100.0 37 ..................................... GGTCAAAGACCTTGGCTCAGCGCTGGGCATCCAATCA 1519 37 100.0 42 ..................................... TTAAAACGAAGCAATTGGCACAGGCGAATCAGCACCACGGTG 1440 37 100.0 39 ..................................... TCGGTTTTACTGCCAGCATTGAGTTGGGCAATGGCATGA 1364 37 100.0 39 ..................................... CATCTCCATCAAGCAACCCAAGGCGAGGGTATTTTCCAC 1288 37 100.0 41 ..................................... TCACCTCCTTGACGTGGTAGGTTGGCATACAGTCAACGTTG 1210 37 100.0 33 ..................................... GCTCAGCCTGTATGGGCTATCCGGCCACCATTC 1140 37 100.0 38 ..................................... ATTCACCTGTTTGGTTGGCTTCGCGACTCCTCAATATG 1065 37 100.0 40 ..................................... CCCAACGGATGAAGCCCCGCAGGTCTATAAACCCCGTGTA 988 37 100.0 38 ..................................... TGACTCCTGATGGCCGAATTGAATGCCTCAATGAAGAG 913 37 100.0 42 ..................................... ATCATTGCCGATCCTCGGTACTGATCAACTCGCTCAGCTTGA 834 37 100.0 37 ..................................... AGAAATAACTTCAAGAATTTATACTCATGATTTTTGA 760 37 100.0 40 ..................................... GCGTGAGTTACCAGATTGATAAGATTGCGGTGCAAATGTC 683 37 100.0 38 ..................................... TGATTAATTCAACCTTCATCATTTCGCCGAAATCAGCA 608 37 100.0 41 ..................................... TTTGAAACCAACAATTAATCAATGCGCATTCAGTTGCATGG 530 37 100.0 38 ..................................... GCCATTAGCGCGGCGTACAGCGTGAGGGGAGGTCATGA 455 37 100.0 42 ..................................... CAGTTTGTCGAGAATATGGAGCCAGCAAGCCTCAGCTTTATT 376 37 100.0 38 ..................................... ACTTTTTTCACCAGTATCAATAGAACCGCTTAAAACAA 301 37 100.0 39 ..................................... TCTTTTTCAACATCGATAGAGTAAACATAGCCATTATAG 225 37 100.0 38 ..................................... GTTACAAGCCGTATGTGGGATACCTACTGGTTTTATGC 150 37 78.4 0 .......................G...C.GGG.TT.A | A [118] ========== ====== ====== ====== ===================================== ============================================== ================== 99 37 99.8 39 GTTTTAATCCCCTGACGAGGATTTGGGTTATTCGAAT # Left flank : TTGCCAATCTGCAACTGATCACAGGCTTGCAACCAAACACCGGCTACACAGTGCAGCGCAATGGCAACAGCGTGAGCATCAGCCAAGGCGGCGCACAAATGAGCGATAGCGGTGGGGTTTTGGTCATCGAGTAAAAGAACATAGAGCAAAGAACATAGAACATACGGGAAGTTGGTTTTGATCCACGAAGGACACGAAGGGCCACGAAGCTCCAATATTAAAGCCCTCTCACCCGTGTGTAATGGGCGAGAGGGCTGTCTATTTTCACCACCAGTTAGCGTAAACCACAAGCGTAGCTTGCAGCAGAGTTTGGGCTACATTGAACGCTTCAACATCCTCAGCTACCCTGAGGCGCACTGTTTTAAACCCCTCGCGGTCGGGGCATTGAACTTGGCCGTTGGTTCGATCCCCATCCGGCTCACCACTTTAGGTTAAAATCCCTCACGGTCGGGGCAGTGATGTGAACGCAAAGGCAAGAAGCCGAGCGAAACACAACTCGC # Right flank : ACATAGAATTGGTTCCCCTGCCCGATCCATCAGGGTCGGGGGGCGACACCGATCCGCCGTAGCGCGACACCCATGCCCCAATCGGGGTCGTTTTCGACACCAGGCGACTCGCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCCCCTGACGAGGATTTGGGTTATTCGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 15706-20063 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUBZ01000145.1 Herpetosiphon llansteffanensis strain CA052B NODE_78_length_20176_cov_28_4111_ID_4296, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 15706 37 100.0 36 ..................................... TGGATTGAGCGCCACGCCCATGATCGCGCTGGCAAC 15779 37 100.0 39 ..................................... TTACTTAATCGCCAAATGGATTTACGTTGCTTTGGTGGA 15855 37 100.0 42 ..................................... TTCTTGACGTGCAATCGGCTGGCGATGCGCTGAAAGCGTTAC 15934 37 100.0 35 ..................................... GTACAAATTGCAAGCATGCTTGCAAATTATCACCC 16006 37 100.0 38 ..................................... CATCGGCAAGGTTTCGCCCGTGACGGCGGTATAACTCT 16081 37 100.0 38 ..................................... TGGGTAAGGGCGATAGGGCATTGATCAACTTGGATACC 16156 37 100.0 39 ..................................... TTACAGACACCTTCAAAGAAGCCGAACTGTACTGTATAA 16232 37 100.0 39 ..................................... CGCAACAAAGGTTACAGCGGCGGTTACAGCACTGACTGC 16308 37 100.0 36 ..................................... CGAGAATATTTTGGCCGTTGGGGATGCGTGGTTTAA 16381 37 100.0 40 ..................................... GGGCTTTTGTTTTGACGACCTGCCCATCCCGAACGAAGGT 16458 37 100.0 38 ..................................... TGCCTGTTCGCATGATTTATACTCCATACGTGCTACAC 16533 37 100.0 38 ..................................... ACTTATGAATGGAGCCATTGGCTCCAAAGAACCAATAT 16608 37 100.0 39 ..................................... CTCGTATTCACTATCGCACAGGCTTACACTGTCAATAAA 16684 37 100.0 37 ..................................... GTATAAAGAGCCACGATTTATTATTTCGTAGCTCTCA 16758 37 100.0 42 ..................................... GCCTTTGGCCGTGCTATTTATTCACTCATTGAGCTGTATTTC 16837 37 100.0 37 ..................................... TTAAAGGACAGAAGCAAGAATTATCTAGGTTAAATCC 16911 37 100.0 40 ..................................... CTTGGTATTAAATGTCAATTTGAGTGTGTTTTGGGTAAAG 16988 37 100.0 39 ..................................... TATGATAACCGCGACGGCATTCCCGAAGTACGGTTAGCC 17064 37 100.0 42 ..................................... ATAATTATTCGCCCGATCCGGCAAAGGGATCACCGTTGCTTT 17143 37 100.0 38 ..................................... GCATATGACCGAGGCGGTTGACAAGGTGTTGCTGTGGC 17218 37 100.0 41 ..................................... CAATTCGCCTACTTTTTTGTCTATCGTGGCACGGAACCAAC 17296 37 100.0 37 ..................................... GCTGGCATTGTGTATATGCTGCTGCATCGATTTAGTC 17370 37 100.0 38 ..................................... GAACATGTGCAATTAGCTGTTCCGATATGGGTTGATAC 17445 37 100.0 41 ..................................... CGTTTGGTTGATAGCCTGCGATATACAAGCCGAGCTGTGAA 17523 37 100.0 33 ..................................... ATGATGTGCCCGATATGAACCGCATCGGTTTTG 17593 37 100.0 40 ..................................... GTTGATCGTGTTGCCAACGGGCGGCGGCAAAACCGTGATC 17670 37 100.0 39 ..................................... TTTGCACATAACTGGCAAAACGTGCCACGGCAATCAATG 17746 37 100.0 39 ..................................... CAACCAACGTTGTTTTGCGTTTGGCTTTGTGAATCATGC 17822 37 100.0 40 ..................................... AAAACCCTAACAGGGTCGTCGTCAAGTTTTAATCCCCTGT 17899 37 100.0 38 ..................................... CGCATACCAATGTCTTCGAGGGCTTTGCGATACTCACG 17974 37 100.0 39 ..................................... TTCATGCTTACTCATTTACGCCCTTCCTTGGCTTGCTTG 18050 37 100.0 42 ..................................... AAAGCGCACCCCGCGCTTCGTATAGAGCGCGGTACTCACAAA 18129 37 100.0 38 ..................................... AAAAATCATGTGGCGCTTCTACCAGGCGATTGATAAAG 18204 37 100.0 40 ..................................... GCAACGAATAAGGAAACGACAAAGCTCGTATTAAATATTA 18281 37 100.0 39 ..................................... CACAATCACGCCCGCCGAGCGTCCCATCTGCATAATTGC 18357 37 100.0 37 ..................................... TGTCTGACCTTCGTATTTAATACTTGGCTCAATCGAT 18431 37 100.0 37 ..................................... AACGCATGATGCACAAGTAAACTTGTTTCTTCATTCA 18505 37 100.0 40 ..................................... CCTGTCCTGTTGATTGACAGTCTTGTGCCTGTAGTGTGGT 18582 37 100.0 40 ..................................... AATGGTAGTTGTCGATTCCATGGCTTTGGTTGTGATTGCG 18659 37 100.0 41 ..................................... TTTGAATGATAGGAACCTGATACTAGAACATATAAAACGCC 18737 37 100.0 35 ..................................... TCTGTACCACTTCGAAAGACATCGCCTTGTTCATT 18809 37 100.0 39 ..................................... TCTTTGGAGGGCTGGCAACCGCGTTGTCGGGGCCATTAG 18885 37 100.0 38 ..................................... CCACGGACGGAGGAGCGGTTTGTCGATATGCTCTTGTG 18960 37 100.0 38 ..................................... TGCGATTTACGACAACGATATAGCGTGCTTTGAATGCG 19035 37 100.0 38 ..................................... AAGTCTAACGCCGCTTTCTTCCATTGGTTCGCTCCGCT 19110 37 100.0 38 ..................................... TTAAAGCTGGGGATCTCATCGGGCTTAGGAATGTAGTT 19185 37 100.0 42 ..................................... GCATCGAAACTCAGTAACAGGTAGTTTGTACCGCTTTTGGAA 19264 37 100.0 40 ..................................... GGTGACTAGGAAGGTCGTGGGTTGGTTTCTCAAATGAATC 19341 37 100.0 37 ..................................... TGGCCCGCAATACGCGGTCAAAAGCGACCGACTTTCG 19415 37 100.0 38 ..................................... GAAACCATGTGCCAACTGCGGCGTGGTGCCACGCATCA 19490 37 100.0 41 ..................................... GTATCTCCGGCGCTGTGGGGTGAAAGCCGATCATCACTTGC 19568 37 100.0 37 ..................................... GTCAACAAGTCAAATGCTTTATTCCGAATATCAGGGC 19642 37 100.0 37 ..................................... TCCACCGTATCCAGATAGAGCTGCCAATCCTCTTTGA 19716 37 100.0 38 ..................................... AGGTATTGAGTGCATCGACGTGATTGAACATATGGCAT 19791 37 100.0 41 ..................................... CCTAGAACGCTTGTGATAATTCGATCTTAACTATCGGCTCA 19869 37 100.0 40 ..................................... CGATAATCTTCAACCATAGAATCACAAGCGCATTTTACAC 19946 37 100.0 43 ..................................... TCACAAATGCATGCAACTTGGCTAACAACAGCGGAATGAAAAT 20026 37 83.8 0 .............................GC.GG.CG | A [20053] ========== ====== ====== ====== ===================================== =========================================== ================== 58 37 99.7 39 ATTCGAATAACCCAAATCCTCGTCAGGGGATTAAAAC # Left flank : CAACGCGCTAGGAGGATCGATGCTCTACTTGATTTCCTATGACATCGCGGTCGACAAGCGGCGCACCAGAATTGCCAAAATTCTTGAAGGTTTTGGCCAACGGGTTCAATATAGCGTCTTTGAATGCGACCTAACCGCCAAACAATATAGCAAACTGCGTGGTAAACTGCACAAAGTGTTGCGGCCTGCTGATGGCGATAATTTACGCACCTATCGGTTGTGTGGCGTTTGTGCACCGCACACCGAAATTGTTGGCAATGGGCCAGCGCTCGAAACCAGCGTCACGATTTACATTTTTTGAAATAAGGCGCTAGCGTGGGCAAAAGTGACGTTATCCACAATTTAATTTTTATAAAATGCCGCGCGATCCGATTCTGAAGGGCAAAAAGTGAGTTATCCACATGCAAATTTACTTAAAACCTACCAAAAAATGCCCAAAAAAATCGGACCGCGCAAACCGTTCGTTTTAGGGCCTTGCAAAGCCATGAAAATTGGGGTAT # Right flank : AATTCCTGAGAGGTTTTGACGGGATTTTTCGCTGATCCGCGCCGCCGCTGACCAATCACCACGCTGGTGCGTGGTTTTTTTGTGAGCAGACCCGCCTCACCGCCCGTTGTGCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAATAACCCAAATCCTCGTCAGGGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 174-2179 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUBZ01000158.1 Herpetosiphon llansteffanensis strain CA052B NODE_8_length_151646_cov_28_0493_ID_4156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 174 37 100.0 47 ..................................... TTGCCTGAAAGCCCCGATCGGAGCAATGCGACAACAATGGCCATAGT 258 37 100.0 39 ..................................... CGTTATACGTTGGCACGCCACTAACTTTTGCTTCAGTCC 334 37 100.0 41 ..................................... TCACCGAGACCGTCAGCACAATGCTGGCGGTTTTGCTTTGT 412 37 100.0 43 ..................................... CTACCATTACCTCTCTATCGTATCACCCCAACGGGTGATCTTT 492 37 100.0 38 ..................................... ATACACGCAATGATGGAACATGTGATCTTTACCACAGA 567 37 100.0 39 ..................................... AGCTTTATAATGGTAATCGACTTGTAGAGCCATTTGTAG 643 37 100.0 34 ..................................... TCGATTAATTGTGGAGCATTTGCCCCAAGGCTGG 714 37 100.0 37 ..................................... CGACTTCGTGCTGTTCAAGCTGTACGGGAACGCGAGC 788 37 100.0 38 ..................................... GCAACAAATACCCGCCCGTGCCGCCAGCGCCAACCAGA 863 37 100.0 38 ..................................... CGAGCGCGGAGCAGCTGGCGATAGGGACTTGGCTGTGC 938 37 100.0 34 ..................................... TAACCGAAGTTTGCTGTCCTCGGTCATCCCATAG 1009 37 100.0 42 ..................................... GTCAATTGCTCCGTGATCTCCTCAATCTTGGCTTCCAGCTTC 1088 37 100.0 38 ..................................... AAAATCGGCTTGGTTTGGCGCAGGGTTCGACACGGTAA 1163 37 100.0 39 ..................................... CGTTATACGTTGGCACGCCACTAACTTTTGCTTCAGTCC 1239 37 100.0 41 ..................................... TCACCGAGACCGTCAGCACAATGCTGGCGGTTTTGCTTTGT 1317 37 100.0 43 ..................................... CTACCATTACCTCTCTATCGTATCACCCCAACGGGTGATCTTT 1397 37 100.0 38 ..................................... ATACACGCAATGATGGAACATGTGATCTTTACCACAGA 1472 37 100.0 39 ..................................... AGCTTTATAATGGTAATCGACTTGTAGAGCCATTTGTAG 1548 37 100.0 34 ..................................... TCGATTAATTGTGGAGCATTTGCCCCAAGGCTGG 1619 37 100.0 37 ..................................... CGACTTCGTGCTGTTCAAGCTGTACGGGAACGCGAGC 1693 37 100.0 38 ..................................... GCAACAAATACCCGCCCGTGCCGCCAGCGCCAACCAGA 1768 37 100.0 38 ..................................... CGAGCGCGGAGCAGCTGGCGATAGGGACTTGGCTGTGC 1843 37 100.0 34 ..................................... TAACCGAAGTTTGCTGTCCTCGGTCATCCCATAG 1914 37 100.0 42 ..................................... GTCAATTGCTCCGTGATCTCCTCAATCTTGGCTTCCAGCTTC 1993 37 100.0 38 ..................................... AAAATCGGCTTGGTTTGGCGCAGGGTTCGACACGGTAA 2068 36 97.3 38 .........................-........... ATAGTCGCGGCCAGAAAATCGCGATGGCGTTGGTCTGA 2142 37 91.9 0 ............T....................C..T | T [2175] ========== ====== ====== ====== ===================================== =============================================== ================== 27 37 99.6 39 ATTCGAATAACCCAAATCCTCGTGAGGGGATTAAAAC # Left flank : GTGGTCGGTGGTGTGCTAGGATGGGTCATGTGATCCTCCCCAAGGGTCATAGACAAATCAATGCGGCAATGGGGTCAAGCAAATCCATTGTCGCATCCATGATTGCATGATTTGTTTATACCAGGGGATTAAAACATAGAATGTGATTCTTCTTGCGCCAATACGATCAGTTTA # Right flank : TAGCCAAAACGAAACCCGCTACCGACGAATCAATCGTCATGCAGCGGGTCGTATGCTAAACGTGGCCTAGGTCGGCATTGATCTGCCAGCTAGACCTAGGCCAATGAGCAGGATATGCTAATGAATTGTAGCACGAATGTTTGAATAGTGTCTAGTTATCTGCATGTAGCGTGTGCAGTCTTCGCTCGTGAGCAAGAGCAACCTTGGCGTGGTCGCTCACTCTTCGATCAGCTGTTTTAGGCGGCTGAGGCGTTCATCCCAGACGATGCTCAACGTCGCGACCCATTGTTCAATCGAGCCAAATGCCTGTGGCACAAGCTGATAGCGTTTTTCTTTGCCAACCTGTTGCACCACCACAAGCCCAGCATTATTCAAAATAATTAGGTGTTTGAGCACACCTTGGCGGCTAATTGGAAACTGGGTTGCCAGTTGGGTTGCGGTTTGTGGCCCATGAGCCGCAATATATTCAATTACCATGCGTCGAATCGGATCGCCCAATG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAATAACCCAAATCCTCGTGAGGGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 1593-1106 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUBZ01000027.1 Herpetosiphon llansteffanensis strain CA052B NODE_124_length_1699_cov_22_5407_ID_4388, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1592 37 83.8 37 ....T....CCA....TC................... ACAATCCCCTTACAAGACATGAATGCTGTAACGGCGA T,A [1586,1590] 1516 37 97.3 37 ........T............................ GCGTGATTGAGCGTCAGTCTTCCTGCTTAGTTGGTTG 1442 37 100.0 38 ..................................... CATTCCTGCTGTACCGGTAATTGCCATCGACCGATCGA 1367 37 100.0 40 ..................................... TGGACATGGCTGTTGTCGAGCTGGGCGCCGGCGGTTTCGT 1290 37 100.0 36 ..................................... CCATTGAAGATCGGCCTGCGACTCGCCAATCTTGAC 1217 37 100.0 36 ..................................... TTCCATCATCTTGTCGTACAGATCGTCTTCCATTGT 1144 37 89.2 0 ................................TCCT. | GA [1111] ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 95.8 38 CTTGGAAGCATCGCCCCGATTACCAGGGGTTTAAAAC # Left flank : AGCGAGTCGCCTGGTGTCGAAAACGACCCCGATTGGGGCATGGGTGTCGCGCTACGGCGGATCGGTGTCGCCCCCCGACCCTGATGGATCGGGCAGGGGAACCAAT # Right flank : AACATACGGTGTTTTTTTAGCCCTCGCTGCCCCTGATCAGTCGCATTTTTGGTTCGTACCCGCCTTTTTCCCCCAATCCTGACGCATTGTGGTCTCATGCCGCGCCATCGTGGTCGTTCATCGACCCACGCATGAGCTGCATTGGTGTGCGATCTGCGTTTGGCGGGCAGCCGCGTATGCCACGCCAGCAGAGGCTGCATGGCCAGGGGATGGCTGGTTGTCGCGGTCGTGACCATGCGCACCCCAGCGACAGGTCAATCAATCAGCGGTCACGTCCGCTCATGGGTTAGCGTTGCCGTGCCTGCTGGCGCAGCACCACCCGCAGGTTGATCACCACATACAGCAAGGTGAGAGATGGTAAGGATTCGCGTCAGATTGGCCAGCAGCCTAAAAAGGTGGTGTTTTATGTCCCTCAATCCCTCATGAGTGGTATAAGAATCGATTCTACGCGATTATTTTTTAGGCTTCGATGGGGTCAGATGCCCCGCCGAGCAGGCTTT # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGGAAGCATCGCCCCGATTACCAGGGGTTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 405-6625 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUBZ01000096.1 Herpetosiphon llansteffanensis strain CA052B NODE_33_length_59378_cov_26_914_ID_4206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 405 37 100.0 35 ..................................... TTTGGAATGCCGCCGCCGCTGCCAACATAAATCAG 477 37 100.0 34 ..................................... GTGTCTATGGGATTGATCGTAAATCACCAGAAAT 548 37 100.0 36 ..................................... GGTTGCCAATCGTCGTTATCGAAATATCTCATGCCA 621 37 100.0 36 ..................................... CTCCGCCACAACGGGGGCAGCCCGATCTTCAACCAC 694 37 100.0 35 ..................................... GTGCTCCAGAATGGGCGTTCATCCACAATACAACA 766 37 100.0 36 ..................................... GGATTTCAAAACGTTGGCCGAGCCACTTATTCAAAG 839 37 100.0 35 ..................................... GGGCTGCCCAATTCCAGTTCGGTTTGGGCAACGTT 911 37 100.0 36 ..................................... TCAACCGATCCAGCTCGGCAGCGTCAGCATCGGCCA 984 37 100.0 39 ..................................... CAAGTTGCGGCTGATGCTGCCCCATTCGCCCAAGTACAA 1060 37 100.0 34 ..................................... CAGGGCTTCAAACCGCCGAAGGCGTGCAATTCAC 1131 37 100.0 35 ..................................... CGCTCGGCATCAGCAGCAGCTTTCTTAGCCGCTTC 1203 37 100.0 35 ..................................... CCGAATATCGACCAACGGTGCAGGGATAGAGAAAA 1275 37 100.0 32 ..................................... CACGAGCGGCCACAACGATTTTATGAACGACC 1344 37 100.0 40 ..................................... AACGCCAGCGACTTGCCGACCAGCCTTTGCTACCAAACTA 1421 37 100.0 35 ..................................... TAATTCCTTGCGCAATCGAGTTGCGGTGAGAAGCC 1493 37 100.0 35 ..................................... CAGATCGGCGACTATATCGCGCTTCACGCTGGCAT 1565 37 100.0 33 ..................................... TACGCGAGGTTGCGGTTGCTGCCTTCGAGAAGG 1635 37 100.0 36 ..................................... ACCCGTTGCGTTTGTGGTTGATGAGCGCGGCGAATA 1708 37 100.0 36 ..................................... GCAGCGCTCTGGCGCTTGGTCAAGAATCTCTTTCAT 1781 37 100.0 35 ..................................... GATGCTGCTTTTTGCATTGCCATACAAGGCATCTT 1853 37 100.0 35 ..................................... AAGATTCGGCGGCACAATCTCGATATTCTGCGCTT 1925 37 100.0 37 ..................................... TCATGCCCAATCCTCCTGTGGCTGCCAGTTGCGAATA 1999 37 100.0 38 ..................................... CTGATGGGCAATCCATTGGGCAGCGGCGTGGTCAATAT 2074 37 100.0 34 ..................................... ATAAATTCTCGCGTGGAGTGTCCATTGAGCATCT 2145 37 100.0 34 ..................................... TTTGGCTTTCGCACCTTGGGGAGCTTTGATGAGC 2216 37 100.0 35 ..................................... GCCAAGACGGAATAAGACGAAAGTTGACATGCTGA 2288 37 100.0 33 ..................................... TGGATGTCACGACACCAGCTATCCCAGTGTCCA 2358 37 100.0 32 ..................................... CCCCTGATGGGTCACTTGCTGATGATCGAAAT 2427 37 100.0 36 ..................................... GACCGCTACGAGGAATGCGCCGAATTGCTGAGCGAA 2500 37 100.0 34 ..................................... CAGGAGCGCTGCCCATGTCCCCCAATCTCGAAGC 2571 37 100.0 32 ..................................... CTCATGGCCGCTGCCATTGGCGGACGCAAGAT 2640 37 100.0 36 ..................................... ATTCAGAAGATCGTCCAAGACTTTCCCAAGCGCAAA 2713 37 100.0 35 ..................................... CTCCCAGCTTCACAGGTGCATGGTTTTACTGGTGC 2785 37 100.0 36 ..................................... CAAGGCGATCATGCCCGCGTTCCGCAAAATCCTTCG 2858 37 100.0 37 ..................................... GTCAGGCGATCCGATTGTTGATTGAACAGTTGATAGG 2932 37 100.0 33 ..................................... CAAAAGCTACGCCTGATAGCAGCCGAGCCGCAC 3002 37 100.0 32 ..................................... GTTGGCTTTGTTGCCTGGGTGGTTTACGGGCT 3071 37 100.0 38 ..................................... AACTTGACCAGATGCAAGGCTACGTGGACGTATTTGGC 3146 37 100.0 36 ..................................... TAACGTACCTTAAACGACGATAGGACGATAACGCGA 3219 37 100.0 37 ..................................... ACAGATGATTGTGTGTTGACGCATCAGTTCGTAGCAC 3293 37 100.0 35 ..................................... CTACTTGCCGATAAATTCGGCAGGATCGCTAGCTC 3365 37 100.0 37 ..................................... AGCGTGCCATATCTAACTCCATTCAATAAATAAAATC 3439 36 97.3 34 ...........-......................... AAAATTAAGCAAGGTAAAAATAAAGCAGATCTTG A [3454] 3510 37 100.0 34 ..................................... TACAACTTAATTGTGAGCACACCAAATACGAGCG 3581 37 100.0 35 ..................................... GCCATAACGATAAGCCTGATCGTGCCTATCCCAAT 3653 37 100.0 34 ..................................... CCCAAGCCACGAATCGAACGAATGGCAACCGCTG 3724 37 100.0 36 ..................................... CTTCATGCGACTTTCGCAGGTAGCTAAACTTTTCCC 3797 37 100.0 37 ..................................... GTTTTGGCAGTGTTGACCGCCGGCGCGATCATATTCC 3871 37 100.0 36 ..................................... CTTCTTGGGCCAGCTCGTATGCTTCGTTATCGTCGA 3944 37 100.0 36 ..................................... CCAGGCTGGCCCGACGGGCGGCCAACGACAATGGAG 4017 37 100.0 37 ..................................... ATAAGCGCTTCCGGCGCGCCGGTGGCCAAGGCTAAAG 4091 37 100.0 34 ..................................... AGCTTGATGGCGATAAATGGCGCGATATGTACGA 4162 37 100.0 34 ..................................... AGCCAGCATGACAATACTGAGTGATTTACCGGAA 4233 37 100.0 34 ..................................... AATACCTGTGGAAAACATGCCCGCTATGCGACAA 4304 37 100.0 35 ..................................... CTCGGTCGGGTCGTCGCAACCTATCCCCAAACCAA 4376 37 100.0 32 ..................................... AGAGTGCCAGCGGATGTGTCCCAAAGGCAATC 4445 37 100.0 33 ..................................... TTTACATGCCTTGCGTGTGGATTTTTGTGGTGG 4515 37 100.0 36 ..................................... ATGCGCCATGGAATGTTGCGATAGCGTAGCGACAAG 4588 37 100.0 33 ..................................... CGCTTCTACTGTGAGAAGGTCTATCAAGGCGCA 4658 37 100.0 35 ..................................... CAACTCTCGTGATTCGCGCACCGTCGCATACTGCC 4730 37 100.0 35 ..................................... CCATGATACAGTAGACGGTACTATCGTTTTGAGGA 4802 37 100.0 33 ..................................... TGCCTGTGAGTTGCAAGCCACTGCCAGCCACCA 4872 37 100.0 36 ..................................... CGAAGCTGTACCGTCCAGGTATGGCGATTCACATCA 4945 37 100.0 33 ..................................... ATGAACGGCGTGCCAGCCCTTCGGTTGATTAAT 5015 37 100.0 35 ..................................... CCCATGAGTTGGCCATGGTGGAAGCCAGAGCGCAT 5087 37 100.0 35 ..................................... TGGCCTAAGTCCGGCCATTTCTGCGCCTTCGTCAG 5159 37 100.0 36 ..................................... AGTGCTGGTGTTCGAGGTCAATGGCCAAGTGGTCAT 5232 37 100.0 37 ..................................... ATGTCGTCAGTGGCTCGGGGATTTGTGTCTCATCTCC 5306 37 100.0 36 ..................................... CCGTGCCAGCGGTTGGCTGGGCGCGTGACTTGTGGA 5379 37 100.0 34 ..................................... ATAAAGTGACGTGGGAGGTGTTTGATTACGATTG 5450 37 100.0 34 ..................................... GCCAAGAGGGGCCATGGAATACAGAGATATTGAC 5521 37 100.0 34 ..................................... TTAGGCTGCTCCATCTATCCCTAGCCATAGGAAT 5592 37 100.0 35 ..................................... TAGTCCCGTTGTTTCAGCGTTACCATGGCCAAAAG 5664 37 100.0 36 ..................................... TGACCAAGCCTTGATTACGCGGCACTTAGACTTAAT 5737 37 100.0 35 ..................................... AAGCCGAGCCAAGCAGGCCTCACGCTCACGATCAA 5809 37 100.0 36 ..................................... ATTTATGCTTCCGCTCTGGATTCCAATTCCAAAATA 5882 37 100.0 35 ..................................... CTCAATTTGATTTATAGGTACTATCCAATAGACGG 5954 37 100.0 37 ..................................... CTACACCTTGAGCGTGCCATTGATTCAAAAACTGAGC 6028 37 100.0 38 ..................................... ATGGGATTACAGATCAAAATCTGCTTGCGTTTGGCAAT 6103 37 100.0 33 ..................................... GCGTGAAAGGCGCGAGGCGTTTTCCACACTCCA 6173 37 100.0 32 ..................................... TGGTGGATATTCTGCCATCGTCGGCCATTTCC 6242 37 100.0 32 ..................................... ATCCGCCCATTTTCCTCTAGTTATCCCACATT 6311 37 100.0 33 ..................................... CGGCATGCAATAATCACATTCCCTTCGTTATCG 6381 37 100.0 31 ..................................... ACGTCCATAAGTAGGTATGATGCGCGGGTAA 6449 37 100.0 32 ..................................... ACAGCTACCAGCTCTACCACTAAGCTACTGAC 6518 37 100.0 34 ..................................... CACAGCAATCTTAGATGCGTTTACTATGCAGCAT 6589 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 87 37 100.0 35 GTTTTAATCCCTTGCAGGGATTCGGTATTTATTGAAC # Left flank : GAACTTCAGGGTCATGGGTCGATTGGTCGGGCGTTGGTTTTTTGCTGGCCATGGGAACTCCTTGCGGCCCTCGACTTAAGATTGATACACCAGATCTGTCTCACCTATGGTAGCACAGAGGGAAGCTGCTCAACGCGCACATCAACGGTTTCCATCAAGCCCGTGGTGAGCTGGATGAGGCGATGCTGGACGACGGGATGCAGGGTGGGAAGATGCAGCCGAATCCATGGACTAATACACTGGGCTGTTGGCGAATCGGCGTATAATAAAGGGGCTGATTCCATCGCGAACTCCTGCTAGGATTAAGGTTTAAGCATCCATATCATAGCGGATAGCGTTGATGGAGTCAGCTTTTTAGTTCCAAGTAGCAATCGATGTCATGCAGTAAGGATGCCAGCGGGTAAG # Right flank : CCGCCCCTCGATTCTGGCCGCATTATACCACACCAAAATGACGCTCGATCGAGCAGCAGGCACGTTTGCTGCTCGCTGCTCTGGGAGCACGCAGGTTGTTTGCATAAATGCTTGACACTTGAATATCATCTAGGCCTTTCTGAAAGCCAATAGCATCTTTTGGTGTTTGATCGAGCAGCGCAGGCTGAGGCTTGCATGCACTACGCCGCTCGATCAATTTTTGGCTAAAGAATAATCGTAATCGCTTCACGTGGCTGTGGGCTGCCAAACGTAATCGCTTGCTCAACACACGCCCCGCAAACTCGATAAAGCCGAACGGTGTCGAGCGCAGGCTCAACGATTCGATTAAGTTTCGCGCGTAATTCTACCAAATGGCGTTTGGTTAGCCAACATTCAAACAATGAATATTGGGTCCAGTAGCCATAGCCGCATAGCAATTTGTGAATTTTGCTGCGTCGCTGATCGTTGGGTATGTCGTAGGCAATGATGTAGAGCGTGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCCCTTGCAGGGATTCGGTATTTATTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 156-1623 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUBZ01000099.1 Herpetosiphon llansteffanensis strain CA052B NODE_36_length_58806_cov_26_2401_ID_4212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 156 37 100.0 36 ..................................... CTACCGATGGCTGAATTATTCATTATTGACCATGAA 229 37 100.0 32 ..................................... GTTCCTCGGGTTGGGCTATGGGTTCAAGGTCG 298 37 100.0 34 ..................................... TTCATGGGCTTCTCCTTTGGGGTCATATCCATTG 369 37 100.0 33 ..................................... ATCGCCAAATTGTTCACCCGTTAAGATTGTGCC 439 37 100.0 35 ..................................... CGCAATCAAATTATGGATGCCTTTACTCGAACGTG 511 37 100.0 33 ..................................... GTGAGCATTTCATAGAGCAGCGTTGATAGCCAA 581 37 100.0 36 ..................................... TTTCTATCGTGCCATTCATGGCCTGAATATCCTTGA 654 37 100.0 35 ..................................... CAAGGGACTTCAATTGCGCTTACCCCAGCCCCGCC 726 37 100.0 34 ..................................... GATTATGGCGTTTTCAATTCTGCACCCGCGACGG 797 37 100.0 38 ..................................... CGCCGTTCACTGCTAGCGGTCGTGGCACAATCATCGAG 872 37 100.0 32 ..................................... ATTCCAAAAATCCGCAAACTGATGTTCTCGGT 941 37 97.3 34 ..................T.................. ATTGCACGCGGGGCAGCAGCCAAAGTGCAGTTTG 1012 37 100.0 34 ..................................... TCATCTATCGGGACTTCAGGCGTATCCGATCCCG 1083 37 100.0 37 ..................................... TTGGCGCAGCCTGTCACCGACCCCAGCGGCAGAGCGG 1157 37 100.0 35 ..................................... ATGGATACTACTGCCACTGCTGCTATCGAACGATT 1229 37 100.0 35 ..................................... TACCACAACATATAGACGTGACTCATCTGGGCTGA 1301 37 94.6 31 .......G.......................A..... CATTCCTCGACAGAGCATGGCTCCTGAGGAA C,T [1334,1336] 1371 37 97.3 35 ......................C.............. TTTCTTCTCCAATCGCGATTGGGGCCGCGCTTTCC 1443 37 100.0 34 ..................................... ATTATCACCCGCCCCGATTGACGTTCGATTGAGT 1514 37 94.6 35 ........C.............C.............. TACACTGTCATGAATAGGCTCGTCTCCCGCTCCAT 1586 37 73.0 0 ...T...CC...G...............TC..G.GTT | A [1610] ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 97.9 34 GTTCAATAAATACCGAATCCCTGCAAGGGATTAAAAC # Left flank : CATTGTCGGGATGTAAGCACCGGTCGTCCCCACACCATCACGTGGAAACTCCCTGCCTTTCGGACGCTTGACTATGAACGGGTTGTCGTCCCATTGCCCGTTCTTGGGCCGGATGTCATGCAGTAAGCCGCTGGCATCGATGCGGATTTACTCGAG # Right flank : TCAATTCTTACTTAGCGTAGCTTGGGCAATGCTACCACCGACTTGACATAGCCTGAGGCCGGTGCTATTCTAGCCCAAAATTCTGTGTAGCAGAATTATATCCTTGTAAAACTAATAATTACAGCAAACAGTGAGGATTCGATGGATAAACACATCAAAACCATCGCCCAACTTAATCGGCTTGTACATGAACCAGTTCGCTTACAAGTGATGAGCTATCTTGCTACCGTTGATGAAGCAGATTTTCTGTATCTGATGAACGAACTTGAGCTAACCCAAGGCAACCTCGGCTCCCACATGAGCAAGCTCGAAGCCGAAGGTTATATCTCGGTCACCAAAGAATTTGTCGCCCGCCGCCCACGCACCAGCTATCGCCTCACCTCAGATGGCAAGGTCGCGATCAATCAATATTGGCGTCTGATGCGCTCGATCGCCAGCGATGTCAATGAGTAAACAAAAAAGGCCTTGGGCAATTGCCCAAGGCCTTTTGATTATGCGGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAATAAATACCGAATCCCTGCAAGGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //