Array 1 245-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADAM01000009.1 Gardnerella vaginalis AMD n.contig008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 244 28 100.0 33 ............................ TACTCTCTTTCTTCTTGCTTTACGCGCGACAAG 183 28 100.0 33 ............................ CTATAGCCGTAGCTAGGCGGCTCGTTAATACCG 122 28 100.0 33 ............................ TGTGTTTCGTGTTCAACTTTGCCACTCAATTCG 61 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : ATAATTTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCAGATTAGATTTAGCATTAAAAGAATTTATTGATTTTGTCGAAAAATTACCTGTACTTGGATATAACGTACAATTTGATATGTCATTTTTAAATTCTGCTTTATCTTCATTAGATGAAAGATTTGATCATTCTCTTTCAATTAACAAAATTTTTGATATTTCTCGTTTTGTAAAGAAAGAAAAGAAATTTTTAAAAAACTACAAATTAAAAACAGTGCTGCACGAATACAACATTGCTGAATCTGTTCCACATAGAGCTCTTCTGGATGCTAGATTAACAGCGCATCTTGTTTTTAATTTGACAGAATTGTTAAAATTTCTTGCGTAATAGTAGAATTGAAAGTGATGCGCAATAATGATAGCTTTGAAAAGTAAATAATTTTTGCTGTTTAATCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : CCTTTTGCCTTAACTTCAACCGGCTTCATTTTTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 107618-106980 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADAM01000008.1 Gardnerella vaginalis AMD n.contig007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 107617 28 100.0 33 ............................ TTGTCTGCATTACTTGCGGTGTGCATTTTTTTA 107556 28 100.0 33 ............................ TATTATATTACTAGAGCTTAATTTAGGAAAACA 107495 28 100.0 33 ............................ CTTTAGTTTTACGCGGGGACCGCTTAGCAAAAT 107434 28 100.0 33 ............................ CGCCAACCGTTATTTCCGATTGATAGCCAATGT 107373 28 100.0 33 ............................ CGTATTGGCTTCGCAGCGCGTACAGTAGTGACT 107312 28 100.0 33 ............................ CGTCATCGGCTTTGCGTTCTTCTGTTTCTTTGT 107251 28 100.0 33 ............................ TAAGAGGTGAACTATGAGCCGTAGAATGCAACG 107190 28 100.0 33 ............................ TAATGCTGTTCAATTTTTTCACTAACGCGGTAA 107129 28 100.0 33 ............................ CATCCATAAAAATAGCTACATCACGCACAGTCA 107068 28 100.0 33 ............................ TAAGGATTCAGTTAGTTTTGATGGTGCGGTTGC 107007 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : GATCCTAGCAGAACACAGCACAACAGACGACGAGGGG # Right flank : CTACCAGCTAGCGAGGCTGAAGGCTTGGCATTGTTGCACGAGTATAGCGAAGACGCGAAAGACTAAAAAATTTTTGTTCACCCCCTTGCTAATGTTCTCACATTGTGATAATATTTAATTATGAAAGGAGGTGAACATGGAAATAAAAGATTGGATTGCGCTAGTGCTCAACATTCTAACTATCATCATTATGATTTGGTTAGATTTACGACACGACGATAAGCGCAAGTAAAAAACGGGGGTTCCAACCACTCATATTGGCTAGAACCCCTAGCCTCAATCTTTCCACACGATTATGAGTAGAGCAAGAGTATTAGGTATTATTTCAGCTATCTGCGCTATTACCGCGGTAACAAACGTTATTTTGCAAGTGCCATTCGCTGGCATTGGGTTCACTCTAGCTGCTGGCATTGCTGGCTTATCCGCTGGCTTAACGGGCAGTAGCAAAGAAAAATAAAAGGAGCTTACCATGTTAGATGAGAACGGACAAACAGTACTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //