Array 1 40936-40236 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRFJ01000015.1 Escherichia coli strain FWSEC0091 FWSEC0091_contig00015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40935 29 100.0 32 ............................. GCGGTGGCGATGCAGGCGGCGCAGTGGCGCAT 40874 29 100.0 32 ............................. ATCAGACCGTTTTTGAAGTGGGCAGGCGGAAA 40813 29 100.0 32 ............................. TCTTTCGTCAATTTTGGCGCTATAAACTTCAT 40752 29 100.0 32 ............................. CGCCCATCAGCACCGCGCAGGATCAGGAAACC 40691 29 100.0 32 ............................. CGGCCCGCGCGGCCGCAATTGAGGCCGGTTTG 40630 29 100.0 32 ............................. CCACACACATCGAGCTGGTGGGGATTAATGCT 40569 29 100.0 32 ............................. TTTTCCACCAGTCGCAGTGGGAGCAAAAACTG 40508 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 40447 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 40386 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 40325 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 40264 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67640-66635 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRFJ01000015.1 Escherichia coli strain FWSEC0091 FWSEC0091_contig00015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67639 29 96.6 32 .T........................... CGTAGTGCTGCTGTATCGATGCCTGATGCGCC 67578 29 96.6 32 .T........................... AATTCGGGCCACACGCGCGCCCGTTCATGCGA 67517 29 96.6 32 .T........................... CGCACCGAGGGGGAAAACTCCGGCGCAGGAAT 67456 29 96.6 32 .T........................... AACACCTACGCAAACGAGCAGTGGCTAAAAGG 67395 29 96.6 32 .T........................... ATGTCGCCAGAACAAAAACAAAAAACATTATA 67334 29 100.0 32 ............................. CCGGTCACGTCAACGCCGATAAACGTCATATT 67273 29 100.0 32 ............................. AAATTGCTCTCTATTAACGATTCTCATAGCTC 67212 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAGGAAACAGCA 67151 29 100.0 32 ............................. GGCTATAAAGGTCTGAAAGAAATTATTTTTTG 67090 29 100.0 32 ............................. GGTGATTCTCGCGACAAATTGCGTAACCGGGT 67029 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 66968 29 96.6 32 .....................C....... ACTGGTTCTGTAACCCAAATTTGGGATCATTC 66907 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 66846 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 66785 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 66724 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 66663 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //