Array 1 96076-95147 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNUN01000001.1 Klebsiella oxytoca strain 709965-17 709965-17_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96075 28 100.0 32 ............................ TATATCGCTGGGCCTACGAACGTGGTTTCGTT 96015 28 100.0 32 ............................ GCGCGCTCAGCTCGATGAAGCAATCAGCAACC 95955 28 100.0 32 ............................ AGATGGCATCGCAAGGCCGGTATCAGGGATTA 95895 28 100.0 32 ............................ ATCAGTTATGACCGGGCAACCGGCGCGGTCGA 95835 28 100.0 32 ............................ TTAAGTTTTCTGCCGCTACATTGTATTCACGC 95775 28 100.0 32 ............................ TCACATAGAGCCAGCCACCGCCGAAGAAGCAC 95715 28 100.0 32 ............................ TGCAGGTGGTTTACATGGCGAGGATTGCGGCC 95655 28 100.0 32 ............................ TCAAATCATCGACACCGGCGCTTATGATGGAA 95595 28 100.0 32 ............................ GCTTTCGCGGCATATCCTCGCCGTCAAAAAGA 95535 28 100.0 32 ............................ TTACGAAAAATTGCCAAAAGATGTTCGTGAAG 95475 28 100.0 32 ............................ CAGAAACAATGTGATGGCGCTTGGTCTGCCGC 95415 28 100.0 33 ............................ TTGCCATCAGGCGCATACACCGGCGGGGATCGG 95354 28 100.0 32 ............................ ATGATACAGGCATATGAGGCCGTTAAGCCCAC 95294 28 100.0 32 ............................ TACATCGGGGTCAGTGTCGCCAATGGTTGGTG 95234 28 100.0 32 ............................ TTCACGGCACGCCATGCCGATTCCAGATATCC 95174 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGTAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATTGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTTGTCGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTTAATCGCTAATTAAAACCCTTTTTTATGATGAATCACTATCTTATTGATATTAGATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTAAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGCTTAGGCTTCA # Right flank : TCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAACGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAGTTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 106516-104505 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNUN01000001.1 Klebsiella oxytoca strain 709965-17 709965-17_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 106515 28 100.0 32 ............................ CTGGAAGAATGTCAGAACTGGCAACCCGTACT 106455 28 100.0 32 ............................ AGGCGCTCACGGCGAGGCCAGTATTTTGCTGC 106395 28 100.0 32 ............................ AGCGTCTTCGCGCGACCGATAAGTTGTTCGTT 106335 28 100.0 32 ............................ TGAATCAGGTCAGGAAATACGCGGCACTGGCC 106275 28 100.0 33 ............................ CGCTACAAGGTATCTTCCATGATCGATCGGAAT 106214 28 100.0 32 ............................ ACAACGCACTCGAGCTCTTTTGCAAGGTTCTT 106154 28 100.0 33 ............................ GATGATAATTTCTATTCGTGGTTTGGCAGGGAG 106093 28 100.0 32 ............................ ATGAAGGAAACGGGGTTCTCCAGTCAGACAGC 106033 28 100.0 32 ............................ GTATACAGCCATCAGCCTCTGACGGGCCGGGC 105973 28 100.0 32 ............................ GCGTGATGCGCGGTTTGCTTCCAGCAAGATAG 105913 28 100.0 32 ............................ ACGCATCCCCCGCAGCTCGTCGGCGCTGAAAT 105853 28 100.0 32 ............................ GTTTACGCCAACAAAATTGAAGGCGATGTGAT 105793 28 100.0 32 ............................ AGTGGGTTATTAAACTGTTTTTTATAGTAAAA 105733 28 100.0 32 ............................ GCGTACGCTCCGCGAACCTTACCAGCAAGTTC 105673 28 100.0 32 ............................ TACGACGACCTTTTAAAAGCTCGCGTTATTAT 105613 28 100.0 32 ............................ AGGAGCGGGTCATATTCCACCGTCGCGGCTTT 105553 28 96.4 32 ..........T................. TCAGTGATAGATATCTGTAACCGGGCGCTGAG 105493 28 100.0 32 ............................ TGCAGCAGCGGGTAACGTTCCTGACGACGACC 105433 28 100.0 32 ............................ CAATACTCACCATTGATGAGCAACGATAAAAA 105373 28 100.0 32 ............................ ACAAATCTAGTCACTATATATCAATTACTTAA 105313 28 100.0 32 ............................ CGGCTCCAGTTCCCTGATGTGAAAGTTAAACC 105253 28 100.0 32 ............................ CGGCTCCAGTTCCCTGATGTGAAAGTTAAACC 105193 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 105133 28 100.0 32 ............................ GGCTGCGTCGGGACCCATCACATCGCCAGCAG 105073 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 105013 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 104953 28 100.0 32 ............................ TGCCGTGGCGGGGTTGGCTCCAGCCACAATCC 104893 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 104832 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 104772 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 104712 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 104652 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 104592 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 104532 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCACCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGAGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCTAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCTGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 119983-119775 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNUN01000001.1 Klebsiella oxytoca strain 709965-17 709965-17_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 119982 28 100.0 32 ............................ TTTGCCAGCGTCTTCAATAGTTGCACAGCATT 119922 28 100.0 32 ............................ CATCATGGCATCCCAGGCGCCGCTGGCAGCAT 119862 28 100.0 32 ............................ GGATGACCGATCGCATCGGCATTTTTGAATTG 119802 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCAGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGTGCGTGGGCGATTGAGAGTCTGGTCTATTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTCGGGGCAGGCCGATATTCCATTGGCGGAAACTCGGCCTGGCGGTAAGTGCACCAGTGTTTTCTGCCTCACCCTGGCCACATCTTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTCTGGGGCGTTATTTTAAGATATTGATTTTTTAATATTTTTATTCTTGCCTAAAAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACAATAAGGCAGGTGCGCCGGGCTAGT # Right flank : GAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACCAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAGC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //