Array 1 45076-45653 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSIM010000013.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
45076 29 100.0 32 ............................. TCTGGGCCGGATTCGATCCCGCGCGTACCGGA
45137 29 100.0 32 ............................. TACAATCCCGCATCGAAACTGAATACCCCGAT
45198 29 100.0 32 ............................. TTGCCCAGGCTTTTGCGAAAATTTGTGATTTG
45259 29 100.0 32 ............................. ACACGGGGCAGATTGAGCAGGACTGCGACCTC
45320 29 100.0 32 ............................. GCAGCAGATTTACAAACAGATCGGAGATTACT
45381 29 100.0 32 ............................. CGCGGCCTGCGCTCGCGTAAAATCAGTTGCAG
45442 29 100.0 32 ............................. TCCGCGCAAGCCTATATAAACCAGATTGATCA
45503 29 100.0 32 ............................. CGAAATCGCACGCGCTTCCCGCATGGGGGAAA
45564 29 100.0 32 ............................. TGTAAAAGTCTTGGTTTTGGCGCATCATTTGT
45625 29 96.6 0 ............................A |
========== ====== ====== ====== ============================= ================================ ==================
10 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT
# Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAGTAGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT
# Questionable array : NO Score: 6.25
# Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 71356-72421 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSIM010000013.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
71356 29 100.0 32 ............................. ATGATCCAGCGCGGCGGCTCATATGAAACTGG
71417 29 100.0 32 ............................. TGCGTGTCGGGCTGATTCGTCAGCTTCTTGGT
71478 29 100.0 32 ............................. AACGACGCACAGGATATAATGCTTGGCCTGGG
71539 29 100.0 32 ............................. TGACCGCCGATACGTTTGCTGGCGCGGCAGAA
71600 29 100.0 32 ............................. GTTACCGCGACTCATGCGACGATAAAAAATAC
71661 29 100.0 32 ............................. GTGCCGCGACTCACCAGATAGAAATAACGCAA
71722 29 100.0 32 ............................. GCTACCCCATTTGCACGCTGAGTTTGATTTCT
71783 29 100.0 32 ............................. GAGTAACCACGGTGGCAAAAATATCAGGGGTG
71844 29 100.0 32 ............................. CCACATCCAGCATTTGCTGAGGTGAAATCCAG
71905 29 100.0 32 ............................. TTAACTTCCTGCGTCTGCTTGGGGGAATGGCC
71966 29 100.0 32 ............................. TTAGCGTGTGATTTTCCGTGTTATAGGTTAGC
72027 29 100.0 32 ............................. GCGGGATTGTTCCGTTTGCCCGCGCCACCAGC
72088 29 100.0 32 ............................. GGGCCGACGGTCGCAGTGCTGGACCATTTCAA
72149 29 100.0 32 ............................. AAGGGGACGGCTACGGGACGCCGCCTATTGAC
72210 29 93.1 32 ............T......A......... GAAATAGCTTTTGCTGATCATCACGGTTTAAC
72271 29 100.0 32 ............................. TTTCGCGGTTGCGCAGAGCCGCCGCCGAGGCA
72332 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT
72393 29 96.6 0 ............T................ |
========== ====== ====== ====== ============================= ================================ ==================
18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT
# Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCTATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAACA
# Questionable array : NO Score: 6.23
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 1 155339-155544 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSIM010000005.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================ ==================
155339 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC
155399 28 100.0 32 ............................ GCTGTATTCGGCAAATGAAGTGGATGTTGATG
155459 28 96.4 32 ..................T......... TTCGTACTTAACGAACTGTTGCTCCTCTGCTG
155519 26 82.1 0 ........T..A........-A..-... |
========== ====== ====== ====== ============================ ================================ ==================
4 28 94.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA
# Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGTTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTATGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTGAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTGTAGGCTGGGGCGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAATGGTGCTGGAAGGTAAGAATAAAAAAGGGTGCCAGCAGGAAAATGAGATGATTTTGCTTTATTAACAACGAGCTAAACGTGTAGTATTTGA
# Right flank : ATGCGAAAAAAGCTCGTACTTTCGTACGCGCTTTTCTTTAAATATGACGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCACTCACTGTGTTCGTGGTCTGTCCAACTGGCTGCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCTGGAGTGCAATATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTGAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTATGGATTTATACTTCCAAAGTACTTCATACATATCACAAAAT
# Questionable array : NO Score: 5.59
# Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//