Array 1 27-570 **** Predicted by CRISPRDetect 2.4 *** >NC_007428.1 Natronomonas pharaonis DSM 2160 plasmid PL23, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 100.0 38 ..................................... ATTACGGCGAATGGACGCTCGATATGACGTTTGACGAT 102 37 100.0 34 ..................................... GTTGCGGTCGACGATTCAGGCGACCAACTCGAAC 173 37 100.0 35 ..................................... AAAGATACGCTCAGGCGTTGTCTCCCGCAACCCAT 245 37 100.0 36 ..................................... AACGTCCCTGATTCAACGCGGATTGGGTCGGTTGCA 318 37 100.0 35 ..................................... TGAAGGTAAAGATATCGTCGTCAATCATGAAAACC 390 37 100.0 36 ..................................... TCGCTAGTCATCGGTCAGGCCCTCCGGGCTGGTGGT 463 37 100.0 34 ..................................... CGTCGGCGTCTCGCTCGACGACCGTGCCCGTCGA 534 37 94.6 0 .........................TA.......... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.3 36 GTCGAGACGGACTGAAAACCCAGAACGGGATTGAAAC # Left flank : GCGTGACTGAAGACTTAGAGTTTGCGG # Right flank : CCTGCCGGTGAAGAACGCGCGGAGCGGCGGCAGCGGTCACAGTAGACAGAAAGCCACTGATTGCGCTGAATAGTCCGAGCTGCTCGTATTGAATTGCCCTGATGCTTATTCTCGATGCTGCTCAAGCAACGCCGATGACCTGTGAGAAAGACAACAACAGTCGGAACAGTTCGATAGAGGTGTGTCCGGAGGTCGGCGAAGCGGTGGTTTCGGTGCGGGACCGTGGGGTCAGAGCTGAATGTATACGACCATCCCGATGTATGCACACTTCGTCGTCTGCTGAGCGAGTCGCGTGTATAGATCGAGCCGGTGATCGGCACGATCACGCCGGCCGCCGAGCGACGGCCACGACCGGGTATATAAAGAACAGCCGCTCGGTCACCGCAGAACGACGCAACCGAATCCCCCGTATGCACGGAGCTATATAAATGGGTGAACGAACGACCCTCAGACTGTCCGACGAACGGAAGCACCTACTCGATCAAGCAAGCGATATCGTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGACGGACTGAAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA // Array 1 38220-38381 **** Predicted by CRISPRDetect 2.4 *** >NC_007427.1 Natronomonas pharaonis DSM 2160 plasmid PL131, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 38220 30 96.7 36 ...C.......................... GCCGATCAGGAGCTCTACGACGAGCTGGCAGAGCGT 38286 30 100.0 36 .............................. ATGATCGAAGACCAACCCGAGGAAACGGAGGATCGG 38352 30 96.7 0 ................C............. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 97.8 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CGAACGATCACGTCCCCTTCCACGGCCAAGAGTACGTTGCGGCAGTGATCACGACGACGGCTCGAACTGAGGCCGTTGAACTCACTGCCAACAGGCTCGAACGGGGACAACTCCCCCGGACGTCCTACGTGTCTCCGTGGTCAGTTCTCACGCTCAAGGACTGGATGATCACGAAACAACCCGCAGAAGCGAGTGACGCGACCGTCGATGAGGTGCGACAAGAATTGGACACATATCTTCAGACTGGATAACCAATATTCGGGACGGTTGCATGTGCAACTATTCAAGGATTCGCGCGTACTGATAGCGGCGTGCTACTGCCGGTACATAAGTGTGGGTGGAAATTCCGGGAGACGTTCTTGTCAGCGAGTTATTCTGAGACAGGGGGTTTCGAGAACCCTTCCGTCGACCCTCCGGGGGTGTGGCTGGTATTGCCGGTTGACGGAAACAACCAAGTTCAAGCACGGTGTACAACCGCTTACGTGCCGCTTTCCGGCATG # Right flank : CTCCCGTCGAGGCCGTCCACGATGGCGGTGTTGGTGTCCGGAAACGCGTTGAACTGAAAGGCAGCGCTCGGAAGTCGCCGGTGACACCGTATTCGCTCGCACCGAAGAGCAGTGACAGAGATACGTGGGAGTTCAACGTCGGCCTTGCTACCGCTGTAATTCGTCGAATAGCGCTTGAACGTTCGACCTAACAGCATCGCGTATTGCCCGTGCTTCCTCGACAGTCGCGTCATCAGGGTCGGCAAGCGCCCAGTCGCGAACGTCAACGGTTGTCTCCAACTCAAGAGTCGAACAGCCCATCGTCGCGACAACGTCACATTGCTCAAGCTCTGCGGGCGTGATTTTTTGTGGTGACCTCTCAGCGATGTCGATGTCAACCTCCTCCATAACGCGGATGACGATGTTATGGACGGATTCAGCCGGGGCAGTGCCGCCAGTGACGATGTCGACTTCTGCTTCGAGACCGCGTTTGTTTCGTTCCTGTTCAGCAAACGCCGTGG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 165989-166282 **** Predicted by CRISPRDetect 2.4 *** >NC_007426.1 Natronomonas pharaonis DSM 2160, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 165989 30 100.0 36 .............................. TGTTGTATCCAACGCCCTACCGATGAACAATAAATC 166055 30 100.0 37 .............................. GCTCTTGAGACGGCTGGCTACATCGACGTGCTGCCAG 166122 30 100.0 35 .............................. GGAAACATCCTTGACGAACTGCGGACGTGGGATGG 166187 30 100.0 35 .............................. AACACGATGTACCGCTATACGCCGGATGGAGTCGA 166252 29 80.0 0 .........-.........C.A.CC..T.. | A,G [166271,166280] ========== ====== ====== ====== ============================== ===================================== ================== 5 30 96.0 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : TAGAAGGGCCCTTAGCTTAGTCTGGTTAAAAGCACCCGGCTCATACTCCCGTCGCTGTTCGGCTACGGGATGGGACACCGGGCGAGCGCTGGTTCAAATCCGGCAGGGCCCATCCACAGTGTATACGCTCCTTGGCCGGCTTTTTGACAACCTAAGGCGTTTACCGCCAGACTAGCTGATTTTACGTTTATTTTTATCACTGTATAGAGGCTCTGTATCCAGCACAGCGTGAGAACCGTACCCCAAAGCTGGTGGGGGCAACCACCGGCAGACGCCCACCACAACTGATTACTCGGATGCCGTCCGGCACGAGTAACTTATGATGTATAATCCAGACCTGAATTCAATCCCAGTAAGACAGCCTTCGACTGACTTGCCTGGCTGCAACCGTCGAGTGGCTTTCCATCAACCCCCCAGGGGTATGGGGTTGATTGGGGGTCGATGGAAATTTCTTTGTATGAACCAGACGTAGAGCTGTTGACACGCCTCTAGCAGGGCTG # Right flank : CCCCCCACGGCCGCGACTACCGCCGCGACACATGACCCAAGCTACGAGCGAACGTGAACCCGGAGCGACCAAGCTTCGTTTCGCCAGCAGAAACTGAGCCGGGCGTTTAAGACCCGTAACTGCTAGAATGTGCCCATGGGCGCTTGGCGGACGGTGGGACTGTCGCGCTTGGGGTGGTCTTTGTCATCGTCCTGCTGGCGGCGAACCTCGTCGTCGCCGTCGATAGGACGGTCCTCGATGAGGAGTACGTAAAGACGACCGCCGAAGAAGAATCTGCCTACGAGGACTTCGCCGACGAGCTGCGCGGGGAGCTACTCGAAGAGGCAGACATAGAGGAGGCAACCGCGATTGCGGCACCCGAGTCCGGGACAGAAGCAGCCGGGGGAGACGACGGTCCACCAGTCGCAGCGGAAGCCGACACCGCCGATGAATGGCCGTTCGAACGCTCCGAAGAGGAGCTACTGGAGGCGACCGTCAGCGAGGCGTACATCCAATCACAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1578925-1579540 **** Predicted by CRISPRDetect 2.4 *** >NC_007426.1 Natronomonas pharaonis DSM 2160, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1578925 37 100.0 35 ..................................... AAGTCCCAAGCGTGACTGAAGACTTAGAGTTTGCG 1578997 37 100.0 38 ..................................... ATTACGGCGAATGGACGCTCGATATGACGTTTGACGAT 1579072 37 100.0 34 ..................................... GTTGCGGTCGACGATTCAGGCGACCAACTCGAAC 1579143 37 100.0 35 ..................................... AAAGATACGCTCAGGCGTTGTCTCCCGCAACCCAT 1579215 37 100.0 36 ..................................... AACGTCCCTGATTCAACGCGGATTGGGTCGGTTGCA 1579288 37 100.0 35 ..................................... TGAAGGTAAAGATATCGTCGTCAATCATGAAAACC 1579360 37 100.0 36 ..................................... TCGCTAGTCATCGGTCAGGCCCTCCGGGCTGGTGGT 1579433 37 100.0 34 ..................................... CGTCGGCGTCTCGCTCGACGACCGTGCCCGTCGA 1579504 37 94.6 0 .........................TA.......... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 99.4 36 GTCGAGACGGACTGAAAACCCAGAACGGGATTGAAAC # Left flank : GAGTACTCCGTCACACGGCGAAAAGCAGTGCGACAGCAAGCAATTCTACTGCGAAAAGCAATCACAGGAGAAATGGACCAGTACCATCCTCTGACATTCCAGCGATGACAATGCGGCTCGCCGTAGCTTACGATGTCAGTGACGACACGAACCGACGCCACGTGTATCGAACACTCCAACGGTACGGGGCATGGAGACAGTACAGCGTCTTCGAGCTGGAAATCAGCAAAACCGACCGTGTTGAACTGGAAGCCGAACTGGAATCACACATTGACCCGAGTGCTGGTGACCGCATTCGTATCTATCGCCTCTGTAGCGCCTGCCAAGACGCAACAACAGATATTGGCAACGACCCGCCGGATGGGCAATCCAACGTGATCTGAGCCCCGTCGTTCATCGACCCTTATCAAATGTCTGTATAGCCCCCCTCCACGAAGAACCGCCCGAGTATCGATACCAGAGAAACGCTTATCATTCCTATCATCGTATTTCCACCCCCC # Right flank : CCTGCCGGTGAAGAACGCGCGGAGCGGCGGCAGCGGTCACAGTAGACAGAAAGCCACTGATTGCGCTGAATAGTCCGAGCTGCTCGTATTGAATTGCCCTGATGCTTATTCTCGATGCTGCTCAAGCAACGCCGATGACCTGTGAGAAAGACAACAACAGTCGGAACAGTTCGATAGAGGTGTGTCCGGAGGTCGGCGAAGCGGTGGTTTCGGTGCGGGACCGTGGGGTCAGAGCTGAATGTATACGACCATCCCGATGTATGCACACTTCGTCGTCTGCTGAGCGAGTCGCGTGTATAGATCGAGCCGGTGATCGGCACGATCACGCCGGCCGCCGAGCGACGGCCACGACCGGGTATATAAAGAACAGCCGCTCGGTCACCGCAGAACGACGCAACCGAATCCCCCGTATGCACGGAGCTATATAAATGGGTGAACGAACGACCCTCAGACTGTCCGACGAACGGAAGCACCTACTCGATCAAGCAAGCGATATCGTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGACGGACTGAAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : NA //