Array 1 47162-48056 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDPC01000006.1 Haemophilus haemolyticus strain 60971 B Hi-3 Contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 47162 32 100.0 34 ................................ TCAGAGCGTACAACTCAATATTTGAATAACATAG 47228 32 100.0 34 ................................ GCCTGCAGCTAAATGATTGGCTCTTACTGCTCCA 47294 32 100.0 34 ................................ TTTGTTTTTCTGAATCGAATAGCCACACAATCCT 47360 32 100.0 34 ................................ ACCAGGTGGAATCCACTCAAATGATTTGGAACCG 47426 32 100.0 36 ................................ ATCTGAGTCTCACCGTACTCGAACTCACCTGCCTCG 47494 32 100.0 34 ................................ CATTTGGTCGCGCATTGCAGCTAACACTTCATCA 47560 32 100.0 34 ................................ TTGTGTTGCCTGCGGTGTATAGCGAAAAGTCATC 47626 32 100.0 34 ................................ AATTAGCCTTGATTTTATCAAGAAAGTAGGTGGT 47692 32 100.0 35 ................................ CCCAATCTCTCGCACTCTGTTGCAACCGTGCTATG 47759 32 100.0 34 ................................ TATCTCCATTAAAACAATAGGCGCTCACTTGGAA 47825 32 100.0 35 ................................ TCGGTGATATTGTCGTCAAACTTCAAGCGTTTCAG 47892 32 100.0 34 ................................ AAGTTGCCGAAAAATGTGTGTTGAATTATGGCAA 47958 32 100.0 35 ................................ CACGCTTGTGCCTCTTTGGTTGGATCAATCCATGG 48025 32 93.8 0 ................A....C.......... | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.6 34 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGATGATCCAAATGGTCAAGCGCGATTACGCCGCATAGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTCTTTGAATGCGATGTCACGCCTGACCAGTGGATCATGTTGAAAAACAAACTGTTGGAAACCTACGACCCCACATGTGACAGTTTGCGTTTTTACCATTTGGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTAGATGTATTTAAAGACTTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGGCGGTATGGCCGTTATACTTACCAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATTCGCTGATTTTTCTTACTTTTTTATGTAGGGA # Right flank : CTGTAATTACAATCAAATTACCGTCATTAATACGGAAGCTGCGTATTTAAGTAAGGATGAAAGAAGATAAAACGACTATGTCAGTAAATGGATAACTTAACATTTAAATACAAAAGAGCGGTCAAAATATAATGATTTTTGGCCGCTCTTGTTTATACGATTTGAATTCAACTAATTTAAAATATTAACCTGCTCTAAAAATTCTTCTTCTGTTAATACTGCAATATTTAGTTCCTGCGCTTTGGCGAGTTTAGAGCCAGCAGCGTCGCCTGCGATGACAAAGTCCGTTTTACTGGAAACAGAACCACTTACTTTTGCGCCTAGCTGCTGTAGTAATACTTTTGCTTCGTTGCGACCCATTTGAGTGAGGGTGCCAGTGAGGACGACGGTTTTATCTTTGAATAAGTTTTCACTGGCTTCTTTTACTTCCACGGTTTCCCAATGTACGCCTTGTGCGATTAAATCATCAACAACGGCAACATTATGCGCTTCACGCCAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 139798-139410 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDPC01000001.1 Haemophilus haemolyticus strain 60971 B Hi-3 Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================= ================== 139797 34 100.0 39 .................................. AACGTTCATCATTCCAACGATTAGATTGACGAACTAAGT 139724 34 100.0 38 .................................. AACGCAACTGCTGGTTCAGCACTATCAAGGATAGTGAT 139652 34 100.0 37 .................................. AACTTATGCTCAACGCCCCATTAACTAACGATTCACC 139581 34 100.0 37 .................................. GACTAATACCATTTTTTCTTTTGACTTGCCCAAAAAC 139510 34 100.0 33 .................................. GACTTATCAGGCCAAGGAGCGGACGTTGTCCAC 139443 34 97.1 0 ................................A. | ========== ====== ====== ====== ================================== ======================================= ================== 6 34 99.5 37 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGA # Left flank : TTTGCTTCCTTGATTGATGTTTTCAAATAAGCTAAACAATTTTAGATTGTCTTGAGTTTCACTTTTTTTACCTAAAACAATGTTTTCTGCTTGGGGTAAAAAAGAAGATATATCGATTGGTTGAATAGGAAAAGAAGGTAGAGAGAAATGATGCTGTTCTGCGAATTGCTTCAAATAATGATGCCATACAGAAAATGCAAGAGAAATCGTGTCTGACATAATTGCTCCATTTAATGAAAATTTGAATAAAGTATAATCAGATTTTGAAAAATTGTCAGCAAATACAAATTTGTAAAATTTATTTTTAGTGTAGTGAGGACTGGCGCATCTGAAAAACTCTGCTAAAATACACCGCACTTTTGGCTGATTTTTGAAAAAATAAGAATGATAAAAATCGTTCAATATTTAATCAAATCAATGCCCAACTATTCAAACATCAGAAAAGTTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCGAACACCCTGCTGCA # Right flank : AATTAAGTTTTTTACTTCTATCTTAAAATTATTACTAGCTTTGGCATTCCTAAAAATCTCCGTTAAAATAACCGCACTTTTATCGTCTCTTCAAGGAAAGCAATATGTCCGATATTCTCAATAACCTCATTCATCTTCTTAAACTTGAAAAAATTGATGATTTAATCTTTCGTGGTGAAAGCCAAGATTTAGGTTTTCGCCAAGTATTTGGCGGGCAAGTTGTAGCTCAAGCATTATCAGCAGCAATGCAGGTGGCGCCAGAAGATCGCATTTTACATTCTTGTCATGCCTATTTTCTTGCCCCAGGAGACAGCCAATATCCGATTATTTACGATGTGGAAACCTTGCGTGAAGGGCGTAACTTTTCTGCATTACGCGTGAAAGCTATTCAACATAAAAATACAATTTGTCATGTAACTGCTTCTTTCCAAGTGCCGGAAAAAGGTTTTGAACATCAAAATACGATGCCAAATGTTGGCGAGCCGGAAGACTTTACGGAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 151493-151959 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDPC01000001.1 Haemophilus haemolyticus strain 60971 B Hi-3 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 151493 37 100.0 37 ..................................... AAGGTATTAACGGTTTAGTTAAAGCAGGTTCTATTTT 151567 37 100.0 33 ..................................... TCCAAAGCGTTTTTAATTCGTCGTAACCTTTAG 151637 37 100.0 33 ..................................... AAAACTCTACGCTTGAGCATTGATCATCACTAT 151707 37 97.3 34 ................C.................... AGTTCCGCCACACGCTTAAAAATTAAATCTTCAC 151778 37 97.3 37 ................C.................... ATTGATGCTGTAGTAGCTGTAGCTACTGAACGAACTG 151852 37 94.6 34 ............C...C.................... GAACGAATTGCGTTGTTGATACCAAACATAATGT 151923 37 75.7 0 ............C...C...CTA........GT.C.T | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 95.0 35 GTCGAAAGACATAGCCTTGCTCGAAAGGGATTGAGAC # Left flank : TATTATTTTCCAATTTTAGGAGTAAAATATGGCTCAATATTTAATAGGTTATGACATTTCAAATCCCAAAAGACTACAACGAATTTATCGTAAAATGACACATTATGCGACGCCAATTCAATACAGCATTTTTTTATTAGATGGCTCAGAGAAATTTCTCAAACAATGTTTGGCTGAAATTATGTTAATCTTCAATAAGAAAGAGGATGATTTAAGAGTTTATCCTTTACCTACCAATACAACACAATGGCGACTAGGAAAATCAAGTTTGCCAGAAGGTATTATTTGGACAGCCTTGCCAACAAGCTTGACATTATAATGCTAGAAAAAATCAAAAATAGAGGTAAAATAGGCCGCACTTTCGATTGGTTGAGAAAGGAACAAAATATGTAAATTGTTTATTATTTACTCAAATCAAGAGTCAACTCCTTAACCTTCCAAAAAAATTGGGAAGTGGGTCTGAAAGGCCGCATGATTCTTGCCTCCAGCATACCGCTGCA # Right flank : TCGCTAAAGTGCGGTTAGTTTTCAATATAAATTGGAAATTGACCGCACTTTTTATTTCTGTTCATTTTTACAAATTTGTATTTTCGCCTTTCTATTTATGACTTTTCTATAATTCACTCCGTCAGTAATTGATTTTTAGCTCAGAGGATTGAGCGCTAATTTAGTTTGTTAAAAATCTATAAAGAGAAAATAGAGAATTAAGCAATTATTGGCATATAAAACAATTGTTCTAATTTAAAAATGTGAGGGAATTAAAATGGCTGGAATTAATAAAGTAATTATTATTGGTAACTTGGGGAATGCACCAGAAATTCGGGCGATGCAAAATGGTGATACGGTTGCTAATTTTAGTGTGGCAACATCTGAAAGCTGGGTGGATAAAAATACACAGGAAAAACGTGAAAATACCGAATGGCACCGTATTGTGCTTTATCGTCGATTGGCCGACATCGCAGGTCAATATTTACGAAAAGGATCGAAAGTTTATGTTGAGGGAAAAC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATAGCCTTGCTCGAAAGGGATTGAGAC # Alternate repeat : GTCGAAAGACATAGCCCTGCTCGAAAGGGATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 155993-156745 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDPC01000001.1 Haemophilus haemolyticus strain 60971 B Hi-3 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 155993 37 100.0 34 ..................................... ATCGTCGGCGCATCAAATGTCTCCCGCTCACCAC 156064 37 100.0 33 ..................................... TCACTCGAATGCCGAAATACGTCCGCAAGAAAT 156134 37 100.0 36 ..................................... ACATTCTCGTTATTCCAGCGTTCAGATTGTCTTACT 156207 37 100.0 36 ..................................... GGTTGTTTTCGATTTTGTTGATTAAGTTTTTCATGT 156280 37 100.0 33 ..................................... TACTCTACTTCTTCAGCTAAAATTGTATCTTCT 156350 37 100.0 33 ..................................... TTTAGCCACTCTTGAAAATCTGCTGGTCTTTGA 156420 37 100.0 36 ..................................... TTCTATAACTAGATCCGATTTGATTATATTTTGAAA 156493 37 100.0 33 ..................................... ACACTGGATCTTTATAGTTCACTTTTGGGTTTA 156563 37 100.0 36 ..................................... TCTAAGGTTGTCTTCTGATGTTCAGACATGCCCATC 156636 37 100.0 37 ..................................... GATGTTGTCCACATCATAGCTTGTGGCCTTAGATTAT 156710 36 89.2 0 ....-...............AC..............T | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 99.0 35 GTCGAAAGACATTGCCCTGTTTCAAAGGGATTGAGAC # Left flank : CGGATATTCCTTTGCATATTTTAGAATTAGCAGGGTTTCAACCTTGTAAGGGATGTTGCAAGCATTTATTAGCCGAGAGGTAAATAAATGCTGAAACCCCTATTATTTTTGACCTCACTTTATTTGAAAGTGTTAGGGTAACATCTAAATCCTCAACTGAAATTTACAAGCCTTACAAAATCCCCATCAATTGATTTCTGTATATCACATATCATTTTCAATTTCTTGCCTTAAGGCATATTCTTTATCTGGTTTATATTTTAATAAATTATTTCAATAAGTTATTTTCAATTTTGCCAATAAGGCTAGACATTCTAGAGCTAGAAAAAATAAAAAAATAACGGTAAAATAGACCGCACTTTCGATTGGTTTAGAAAGGAACAAAATATGCAACCTGCTTATTATTTGCTCAAATTAAGAGCCAGCTCCTTAACCTTCCCAAAAAATTGGGAAGTGGGTCTGAAAGGCCGCATGACTCCTGCCTCCAGCATACCGCTGCA # Right flank : TAGATAGAGATTTATTATTGATAAAAATATCGAAAAGCTAATAGGAGTAATAAAGGGCGTATTGCACGCCCTATTATTTTCAAGAAATGTACTAAGTTATCGGCTAAATTTAGCCGAACTTTTATAAATGTTTCACTCTCCGCTTCACTTCTTCCTGTTTTCCCGCATTAAATGGGCGGGCATCAGGGCTACCTAGATAGCCACATACGCGGCGAGTGACAGAAACTTTTGTGCTATCGTGATTGCCACATTTAGGGCAAACAAAGCCTTTACTAGTACATTCAAATTCGCCAGTGAAACCACATTCATAACATTCGTCAATCGGTGTGTTTGTTCCGTAGTAAGGCACGCGATCGTAGCTATAATCCCACACATCTTCCAATGCTTTTAAGTTGTGTTGAATATTTGGATATTCACCGTAGCAAATAAAACCGCCACTAGCGAGTGGGGGATATGCCATTTCGAAATCTAGTTTATCGTAAGGATTCACTTTCTTTTCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //