Array 1 12835-11487 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHD01000042.1 Gilliamella apicola strain Bim1-2 Gilliamella_apicola_Bim1-2_contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12834 28 100.0 32 ............................ TTGCTTGAAATCACCTGCTCTTTTTAGTTCTG 12774 28 100.0 32 ............................ AATGGGGAAGTTGCAGCTTGCGATATTAGACC 12714 28 100.0 32 ............................ TCTTGTAAAGTATGTAAAAAAGCTTTTTCATC 12654 28 100.0 32 ............................ TTAGGCGTCGGTGCTACTGAATACGTTCCTAT 12594 28 100.0 32 ............................ TGCCTGGCAAATCACCGTATAGCATTACTAAA 12534 28 100.0 32 ............................ GACGATAGATTGCCTGATAATTTGAGTTTTAG 12474 28 100.0 32 ............................ TCGTAGGCGGGTGCGGTGTAGCACGGATTAGG 12414 28 96.4 32 .G.......................... TGATCAAGCAGACGAAACTTGGTTGATCCGAC 12354 28 100.0 33 ............................ AATAATCCGTTTGTGACTGGTTATCTTCTGCTC 12293 28 100.0 32 ............................ TTATTGGTTAGTTTTTTCCAGTCTGGTGTACC 12233 28 100.0 32 ............................ GATACTACCGAGAGTGGCTGTTTTATCTGCAT 12173 28 100.0 32 ............................ CATCAGGAACATAAATGCCTGTTTGGTGCTGT 12113 28 100.0 32 ............................ AAAATACTCACACAATGCTTTCATTGTCTTTA 12053 28 100.0 32 ............................ AATGTTTCGTAGCCCCCAAGTAAGTATTCTTT 11993 28 100.0 32 ............................ AACGCTTAATGCCGTTTCGTCGTGATGAGCTG 11933 28 100.0 32 ............................ TCTTATCGATACGGGACAACTTCGGGCATCAA 11873 28 100.0 32 ............................ ACTAAAAATACGGAGAGGAAAATAACTACAAA 11813 28 100.0 32 ............................ ATTTTTAAAAAGCCCAGAACTTGTTTGTAATC 11753 28 100.0 31 ............................ CACAACACCCGCAATCCCGAAAAAAAAACTG 11694 28 100.0 32 ............................ GCTACATGAGCGGTTTTATTGAACAAATTGAA 11634 28 100.0 32 ............................ AGATGCCGATTCCAAAGCTTCATCATTAACAT 11574 28 100.0 32 ............................ GTCGACAATAAAAGGTTATTTACGGTTCAGAC 11514 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.8 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : AACAAAGAACCAAGTACATACTGTTTAAAATCCCAACCATCGACAGCACCACGGACTTCGTCGGCAATTTTCCAAATTTGTCGTTGTAGTTGATCGCGTTGTTGCGTTTCGGTAATTGATTTAGCGTTACTAGATGTCATATTTTTCAAAATTCCTAAATAAAAAATAGGTGCTGCCTAATTAGAAAGTAACTAATTTTTATTTTCATATTAGTCATTTTATAGCTACCTGTTATAGGTGCTATAGCATAGCTGATTTGTTGTTATTTTTCCATCTGGGGTGTTTATTAAAAACTCAGCCAATGGGTATTTTGAACTTTAAGGTTGGGAAATCTTAAAAAATAACAAAGCAACAAAATCTAAAAACAAAACCCTTTTTTTAGCTATATTTTAAAAGTTAATAAAATCAATAAATTAAATTTATCTCTAAAAAAAGGGTTTTTAAAACCTAAATACCTATTTGCCTTTTTACATACTATATTGATAGTATATTAGCTTCTA # Right flank : TATATAAAGATATGTCAGGGAGAGTTAGTGCTTCATGAAGTCTTTTTGTATTACAAACGGTTGAATGAATGGCCGTAATACGTTTATTCAAATTGATAATAATTTTCTTTATGATATTAACGCCATATCACTTGTTGGTGATACGGCGTTAATTTTATTTTATGAAAGTTTATTACAGTAGTTTAACTGACTATTTCCTATAACCAACAATTGATTCCTACACATCATATTAGTTGATTGATCATTATTTTGCCATTTTTGGGGTATCTATCTGCTTTACTAATGTAAAATCTATAGCTAATAATTTTTCTAATCGTGCAAGTATCCAATTATAACGATCTTTTAATGCATCTTCATGCCATTGTTGATTAAATGTTTTTTGATTAAAATCATCTAATACTTTTTGAGAAAGGCGAAATGCAGTCGTGTTATTAGTATGATTACCCTGATATACGATCATTTTGACATTGAAAGGATTATTACTAGCATCAATGTTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29870-29362 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHD01000011.1 Gilliamella apicola strain Bim1-2 Gilliamella_apicola_Bim1-2_contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 29869 29 96.6 31 ............................A TTTTACCGCCAGTTATTAATGGCGCTCTGAT 29809 29 96.6 31 ............................G ACCAAAATCCTAGCATCTTTAAGCGATAATG 29749 29 100.0 31 ............................. ATATTTATACATTATAGATTCTCGTCGTGGT 29689 29 100.0 31 ............................. TGTTCATGTTTTTAATAAACCCCAGTACGCT 29629 29 100.0 31 ............................. AAACTCGCATCAGTTTTCCCGTGGGGTCGGT 29569 29 96.6 31 ............................C TACATTCCTCGTTATGGTGAGCCTAAAGTCA 29509 29 96.6 31 ............................A TTAGTCGGAAGCTTGATATATTTTAGCGTGT 29449 29 96.6 31 ............................A AATCAGACAATCGCCGTCGATCCTGCTTTTC 29389 28 96.6 0 ......................-...... | ========== ====== ====== ====== ============================= =============================== ================== 9 29 97.7 31 GTTTACCGCCGCATAGGCGGTTTAGAAAT # Left flank : AGCTTATTATTTAATGGTTGTGGCATTAGTGGGTTTACTTACAGGCATAAAAATGAAAGAAACCGCAAACCGTCCACTCCGCGGCGCAACGCCCGCAGCATCAGACAGGTCAGAGGCAAAAGAAATATTATCGGATCACTTTGACTCAATAGAACAAAAAGTCGAAGATATAGAACAGCAGATCGAAACATTACAACAACAGCGTCAGAATTTAGTCGATCAGCATCCTAAGTTAGATTGATTTTTTTATTTTTGGTTTTGTATGTTTTGTTTAACATACAAAACCAAAATTTAATAAAATCAAAACGATATATAAGTAATTTCTAACGGTAAAATTGATCCATCATAGAAATAGCTAAAACACTGCCAACCCTTTTTTTTATTAATAAATAAAAGTAAATAAAAACAAAGTATTATGTAAGATCTTCAAAAAAGGGTTTTTGAAAACAGAAATCCTATTTGCCTTTTGCTAAACAGGGTTTATAGTATATCGGTTTCTA # Right flank : TCTGGCATTATTATTTTTAACAGCATAACGTTTACTACTGTATAACAGCTTAATTTTAATTAAAATTATTAAATTAAAAAACAAAAAAGTTTGAAAGTTAACTGTGAAAAAACTATTTGCACATTAACTTACTATGATATTGTCGACGATATTCAGTGGGTGTTCGCTCTGTCTTTTTTTTAAAAATCCGACAAAAATAATTACTATCTTTAAACCCCGATGCTAGAGCAATTTCTTTTATATTTAGATCATAATCCTTTAATAGCGATTTTGCATATTCTAAGCGAATATGATTTAGATATTCATTTAGCCCTATTTTTCCCTCGCTTTGAAATAGATGTGATAAGTAATTGGGTGAAATGTAAAACATATTAGCTAAAAAGTCGCGTGTAATATCTTCACGAAAGTGAGTATCAATATATTGGCGAATGGCTTCATATAGGCAAGTAGTTTTGGATGATGTTTTGATATTGATATTTAACAAATCGAGTGTGTTGCTA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGCATAGGCGGTTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13501-13174 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHD01000047.1 Gilliamella apicola strain Bim1-2 Gilliamella_apicola_Bim1-2_contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13500 28 100.0 32 ............................ TTGATTTAGATATAAAAAAAGCGACTGAAGTC 13440 28 100.0 31 ............................ ACTGTTCAAGGTTGGCTTTCTAATGAATCCG 13381 28 100.0 32 ............................ TCATCGAAAGCTGAGGGTTTGCTTTATCAACG 13321 28 100.0 32 ............................ GCTACATGAGCGGTTTTATTGAACAAATTGAA 13261 28 100.0 32 ............................ ATTCCCAAGCCTTTTTCGATCATTACTGAATG 13201 28 85.7 0 .................T..CA..T... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTTACCGCCGAGTAGGCGGTTTAGAAA # Left flank : TCATCCAACAGCTCCTCTGAAAGCCCGTTGGTTTTATAATTATGAAATTGATAGCTTACATGATGATCATCAAGCCAAGTAAAAGCTTTTTTCATCGTGTTGCAGTTTTTGATACCGTAGATGATGTACATAGTAGGTGATCCAACATTGAAAATAATAATAAAGATTATAACAGTTATCGGCCTGATGCGGCAAACTAAAGGGATTTATTTGTTTTAATTCATATTAATACTCATATCTAATGTTAGTTGTTAATGCCAAATAGTCGCTAGTGAAAGCTTGAAATTTTAAATATTTTGGATGGTGAGTTAAGAAATGAATTTTTGAACAGATAATTTCACTCATTTTAAAAAGATCAAACTATTGCTAACCCTTTTTTTTAACAATAAATAAAATCAAATAAAAACAACACACTAAAAAAGCTCTAAAAAAAAGGGTTTTCAAAAGCAAAAATCCTATTTGTCTTTTGCGAAACAAGGTTTATATTATATCGGTTTCTA # Right flank : TCAAAAAAGCCCTCAGACGAGGGCAGTGGATGTCTACCGACAGAATAGCTGGCTATGGTTATTAGCTGTGTTCAAAAATTTTATTGAACGCTTAAGCTAGTTGTCATTATCAATAGTATAAAATGATTATTAATTAACTAATTGCAGCATTTTTCAACAAAATAACTCATAATTCGATTATCGACGGTTAGTTCGGGATGAAATGAGCAAGTCAAAATGTTATCTTGCTGCGCCATTACACAATGATTATCAATAAAAGCTAGCTGATTGACTTGCTCACCAGCTTTTGCAATATATGGAGCACGAATAAATACTGCTGGAATTTGCTCACCAATAGTTGGTATATCTAACGTTGTCTCAAAGCTGTTAATTTGCCGACCAAAACCATTGCGTTCAACGCAAATATCCATCAAATCTAATAATTCGACTTCGTTATGAGTTGTCGTTTTGCCACAAAGCACTAGCCCAGCACAAGTACCTAAAATTCCTTTGCCTTGTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGAGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 26039-25526 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHD01000076.1 Gilliamella apicola strain Bim1-2 Gilliamella_apicola_Bim1-2_contig70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26038 28 100.0 32 ............................ GCTATCTTGAGTTGTATTTGCGGCAGACGAAT 25978 28 100.0 32 ............................ TGAATGGCATCACAATAAAGATAATCTAATTG 25918 28 100.0 32 ............................ AAAATTGGGTTAACCTGTGTAACGGGTTGGCT 25858 28 100.0 32 ............................ AACAGGACAATACAACAAAATCTTAGCTGACC 25798 28 100.0 32 ............................ TATACAAGCCTCACTGTTTGGGTAGTCACGCC 25738 28 100.0 32 ............................ AGACCAAAACGGCAGGGACAAACCCAATGAAG 25678 28 100.0 32 ............................ TACAACCTTACTTTTTGGTGTTAAAAATTTAT 25618 28 100.0 33 ............................ AGACCGATCCACGACAACGCCCCTTTAACTTTA 25557 28 96.4 0 .......................T.... | T,T,TA [25528,25530,25535] ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.6 32 GTTTACCGCCGTGTAGGCGGTTTAGAAA # Left flank : GATATTTAATTAACCAAATTGGGCGATTGTTAGGGTTATGCTGGTAAAACCATTCCAATCGACTTTCAACAGAAACAGACACTGTATCGGCAGTAACTTGTCGACCAGCAATTGTTGAATTATAAACATCAACAATAAATGATAAATCTTCTAATGTAGCATCGTGGTAAGTAATCATGTTTTTTGCTTTAAGTGGTTTAAAGTGAAATTATTGTAATTTTATTATTGTTTATTGGCAATAAAGCATATTTTTTATAGTGAGAAAAATAATCTAGGTAGTAATATTTCACATTTAAAATAAAATCAATTCACTAGATGAATTTTTTGAAAATACAATTTAAAAATTGCCTCAAAATATAAAATTTAGCTAACCCTTTTTTTTAACAATAAATTAAAATCAATAAAAACAAAATGTTAATAATATCTTGTAAAAAAGGGTTTTTGACAGAAAAAATCCTGTTTGCCTTTTGCTAAATGGAATTATAGTATATTGGCTTCTA # Right flank : AAAATAGAAATTTCTGTATAACTGGTTGATTTTAATGAAAATAAAAAATTAAATAAAATCAATGCTCTACCTGAACAATTTTATGGGCGTAATACATCCCATAACATGGTAAGGATTATATGTTCGTTGGTTTTAGGTAATTCACTAATTCCTTGGTTTAGAAATTATCACCAATATTCATGATATTCACAAAAGTTAAGACTTACAAAACCTAACACCATATGCTAATTAAAAAATTGCATAAAAAACTAGCCAAGTTTTTTTAAAATGGCTATACTTTAACCTCCTTAAAGGAATAGATTATTAAACAATCAAATAAATATAAAAATTAAAATAAATCATTAATTTACTTGACAGGCGAACCGTAATACATTATCATTTTAGCCACCAGACATGGCAAACCTATGTCTTAAATTTATCAAATAAACATACTAGTTGGATTTTTAGCCCCGCCACGTTTATATTTTCAAAGTTATCTTCCAAATTATTATCAAAATTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //