Array 1 63858-62365 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHJ010000010.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
63857 29 100.0 32 ............................. ACATACTTTGCAGGCGATCGGCAGCTCTGGAA
63796 29 100.0 32 ............................. TTCAGGAAACCGGCGACAGCTCAGCTGATAAT
63735 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC
63674 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG
63613 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG
63552 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA
63491 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT
63430 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA
63369 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC
63308 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT
63247 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC
63186 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG
63125 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT
63064 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC
63003 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG
62942 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG
62881 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA
62820 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA
62759 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC
62698 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT
62637 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC
62576 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA
62515 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA
62454 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT
62393 29 100.0 0 ............................. |
========== ====== ====== ====== ============================= ================================ ==================
25 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT
# Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.51 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 90623-89557 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHJ010000010.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
90622 29 100.0 32 ............................. GGGACCGCCGTAGATGAAATTAAATCATTCAG
90561 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT
90500 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT
90439 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG
90378 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC
90317 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC
90256 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG
90195 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG
90134 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC
90073 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC
90012 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG
89951 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT
89890 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC
89829 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC
89768 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC
89707 29 100.0 32 ............................. TTCTTGCGGGTGTTGCAAATATTCTTCACGTA
89646 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT
89585 29 93.1 0 .A..........................A |
========== ====== ====== ====== ============================= ================================ ==================
18 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA
# Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT
# Questionable array : NO Score: 6.22
# Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.65 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//