Array 1 78342-79774 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIA01000039.1 Escherichia coli W26 1.ECW26.1_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 78342 29 96.6 32 ............................T GGAGCCAACAGGCGCAAAATTCGCACTCCCTA 78403 29 100.0 32 ............................. GTGCAGCTCGTGCAAATGAAAACAAAGTGGTC 78464 29 100.0 32 ............................. CGGCTGACTGAGGCTGGCTGGGTTATGGGGGG 78525 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 78586 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 78647 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 78708 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 78769 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 78830 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 78891 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 78952 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 79013 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 79074 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 79135 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 79196 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 79257 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 79318 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT C [79323] 79380 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 79441 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 79502 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 79563 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 79624 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 79685 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 79746 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105473-106905 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIA01000039.1 Escherichia coli W26 1.ECW26.1_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 105473 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 105534 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 105595 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 105656 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 105717 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 105778 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 105839 29 100.0 32 ............................. CGTGGAGGAGAGGGCGACGCGCTGGCAGACAC 105900 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 105961 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 106022 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 106083 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 106144 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 106205 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 106267 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 106328 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 106389 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 106450 29 96.6 32 ............T................ CAATTCATAAATTAATTTACTATTTTGAGTGC 106511 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 106572 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 106633 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 106694 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 106755 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 106816 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 106877 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //