Array 1 138445-137863 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFLN01000004.1 Gemmiger sp. An120 An120_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 138444 33 100.0 36 ................................. AACCGGCGGTGCCGTTCACCGCGCCGTCGGTGCCGG 138375 33 100.0 35 ................................. TCGCCCGCACAAGAAGGTTTGTCTCGCTTATTTGA 138307 33 97.0 36 ..................T.............. CTAAGTTCGCAAGTAAAGTGTACCCAATCATCACCA 138238 33 100.0 34 ................................. CCGCAGGAAATTGGAATCTTAATTCGAATCCCTC 138171 33 100.0 36 ................................. CTTGAATTCCTGCCCCTTTGCGATGGATCCGGCAAT 138102 33 97.0 36 ........C........................ CCGGACAGGTGCCGGTGGAGGGTGCCGAAGTTTTGG 138033 33 97.0 33 ........C........................ GGAAGAAGCACGCGACAATATCTACCTCGGGAT 137967 33 100.0 38 ................................. TCGTCTTGTCTTTGCGCTACCTTGTCTTGATGGTCTAA 137896 33 78.8 0 .......CC............A..A...AA..A | A [137869] ========== ====== ====== ====== ================================= ====================================== ================== 9 33 96.6 36 GATGCGCTTCACACCCCTCACGGGGACAGTAAC # Left flank : TTCTGGATGGTAAATCTCCGGCGCGGCGCTAAGAAAAAACTCCTCGCTGGTCACATAGTTGATCTGTGCTGAGCGCAGGGCATTTTGCTGCAGCTTTTGGCTGGCAAAGATATAGGCTTGCTTTTGCGATACTTCCATGATCATCAGAGTCTTTTGCATACGTAATATCCTCCCCGAATACTGGCGGCTGATGTCCTTATTGTAGCATATTTCACGATTTGTGACAGAGCTTTGACGTTTTTTTGTTTTGAATTTTCTGATTTGAAAAGTACTATGGATTCGTAATTGGTAGCGATTATCTGGTGCGAAGCTTCAATTTTTACCCTTTTATAAAGTAGAAAAAACATGGGTTCGCACCATTCGCATTCCAAACAGTAAGGAGCAGTTTTGTCATGTTTCAACAAAATTGTCTTGCACGCAGATACAATGTGTGCTATTCTAATAAGTAAGAATCAGAAGGTTTTCACAAACACAACAGAATGCTTTTGTGTAAATTTGCT # Right flank : GAAAAGCTATTCATTGTGCAATATTCGTACAATGGATAGCTTTCTTTTTAACCTTTTTGTCTGGCGCCGATGCTCGAGAGAATGTTCAAAACGATGTTGTTGCTGTCTGGCATATGCTTCTGTTTGTTAAACGGAGTGCGTACACCTGTCAGATATAAGCGCTTTAACTTAGCAACTTCAGCTGAAGTTGCAGATGTACGATTTGCTGCCAGCCATTATGCTCAAACACAAATTCTTCTTCGGCCCTGCCGTCTGCCAGGTGGAGCATCCGCCCCGAGGGAATACGCCGTGAAACGGATTGCAGCACAGGACGATCGCCCGCCAGCGGCATTAACTGAGCAACCATTTCCAGAGGCAGAACAACAGCAATCGCCTGCACTTGCGGCAGAAGGGGCTTCAGTTCGTCTACAGTTTTTAAAGTGTCCTTGTATTGCAGCAACTCGACCTGATCCTGCATTACCCGCTCCAGATCCGCAAGTTGTTCCGGCGTCATCTGGTGC # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCGCTTCACACCCCTCACGGGGACAGTAAC # Alternate repeat : GATGCGCTCCACACCCCTCACGGGGACAGTAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 148202-148651 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFLN01000004.1 Gemmiger sp. An120 An120_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 148202 33 100.0 33 ................................. GTGGTAGCAGTGGTCAGAGCAATGTTCTTTGCG 148268 33 100.0 36 ................................. GTGATGCAACGGAGAAAATCGTCCTCACAATTTCGA 148337 33 100.0 38 ................................. ATAAACTTTTCTCCGCTTTTTTACGACAGAATATCCAA 148408 33 100.0 37 ................................. CTCTCGCAGAAAAACAGCTCTCGACCCAGCCGACTGG 148478 33 100.0 37 ................................. TGGATCGAGGCAGTGGTGTTGGATTCATCCACATCCG 148548 33 100.0 38 ................................. CCCTTCTTCCTCAAACTTCAGATGCCGTTTATCCCAGC 148619 33 93.9 0 .......................A.T....... | ========== ====== ====== ====== ================================= ====================================== ================== 7 33 99.1 37 GATGCATCCTACACCCCTCACGGGGACAGTAAC # Left flank : AGGTCTGGTGGTGATGTCCCATAGGTTGCATTTCCAGGTTTTTTCGCTAAAAAGTCAACGGTTTTGGCTGAAAGGAAAAGCCGTTACAGGCTTCACGGGAAAAATTGTTCTGGAGGACAGGAACCAGGGGTTTCATTCGGAACTGGTAAACGCGCTCCTGTATTTTTCGCAATTCAGTGGAATAGGAATAAAAACCGCACTCGGTATGGGCGGAGTGGAATATCGCCGGTAAGAATAACGGCCAATCTCTTTAATTGAGAGTTTTCTCTCCGGCGAATCCAGCAGGACGCGCATCACGGTCTTGGTGCGAAGCTCTTTTTTCTCACTGCTGTCTCGTGGCTTAAAACATGGGGTTCGCACCAGACATCGTTCAAATATTATCGCTTTTTTCTGGGATTTCTCACAAAACCAACTTGTGTTCAAGTAAAAAGTCTGCTAATATAATAGCAAGACTTGGAAAGTCTATTAAATGCATCGATAAATTTTTGTGCAATTTTGCC # Right flank : CCCAGCAAAACGCTCTGTTTGGTGATCGTGCTGTTGATACATTCCACACCTACTGTTGAAACACTAACAGGGCATTTCACAAGATCAATAGTACTCGGATTGCGGTGTACCTGATTCCTTTTCCCGAGCAGGATAAGGTTTCTTGTGCCATCTATATTTCATAATAAGTTCAGTGAAAGAACTGTTACTTTTCTGGTCGGCAAACTTCAGTTGCCGGCCTTTTTGATTTTCGCGCTCTCCTGCCTCTTCCCCCTCGCAAAGAAGAATCTTAGGCTTCCATTTCAAATAGCGATGTTTGGGGACAAATTCTGCACATCTTTCTGATGATGGACATTTGTCTGTCCAAGGCGTAATGGTACAGTACCCTTATAAATACAGGGGCAACGTTTCCCCTGTAAAAAGGAGGAACGATCATATGCCTTTTTGCCAACGCTGTGGTTGCAAGCTGGAAGACACGGCGCGTTTCTGCCCCTCCTGCGGGCAGGCCGTCGCTTCCGGCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCATCCTACACCCCTCACGGGGACAGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //