Array 1 83815-88470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIVAC010000004.1 Exiguobacterium aestuarii strain AmN35-10 AmN35-10_ctg0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 83815 32 100.0 34 ................................ CCCTAATTCAATCGGGTCGCTCGTTTGTGTCATC 83881 32 100.0 35 ................................ ATAAAGTGGTTTTCCTCCTAAAATGGAATCAACAA 83948 32 100.0 34 ................................ GTGTAAACTCACCGCTCATCTGAATGACAAGTGG 84014 32 100.0 35 ................................ TTGTTGTGACACGGTGTGCAAAGATACTGTAAGTT 84081 32 100.0 34 ................................ GTCTCGTTGTTGAGCAATAACTTCGACGGTTCGT 84147 32 100.0 34 ................................ AAATCGGACTCGGTCGAGGTCATGCCATTCAAGA 84213 32 100.0 35 ................................ TTGTCGTAGTAAGTTGATCGCCATCACCCCGAATA 84280 32 100.0 35 ................................ TGTAACACGATGGCGTAGATGCCTAGCCCAATGGC 84347 32 100.0 33 ................................ GAGGAACTTGAGTGCCGTGTATACCTGGTCTTT 84412 32 100.0 33 ................................ ACTTGTGAGGCGTTATGGTACGAGTTGCGGGAT 84477 32 100.0 35 ................................ GGCGTGGAATGGAGCGTTAAATCTTACAAATATGC 84544 32 100.0 34 ................................ AACAAAACTTGTATGTAACCCGCGAAACGAAGAT 84610 32 100.0 34 ................................ AACAAGGTCGAGCGGGACGTCGACCGTGAGCGGG 84676 32 100.0 34 ................................ CGGTATGGATTTTTTACGGCACAAATTTATTTCG 84742 32 100.0 34 ................................ TTTTATCACCTAGTAATTCCACGAAGAAGAATCC 84808 32 100.0 33 ................................ AATGGCAAATCATCACCCGACCGATTCGGGGAC 84873 32 100.0 35 ................................ GCCTTGTCAGTTTCACCAAGTAGGAAATCAGTGGT 84940 32 100.0 34 ................................ AAGTAAGTGGCGCGACAGGCGAGTTCGCAATCAG 85006 32 100.0 33 ................................ AGTCTTAATTTAGACATGGAATTCGTGTCGAAC 85071 32 100.0 34 ................................ AGGTCGCCCGCGAATACCTGCTGACCACTATTCA 85137 32 100.0 35 ................................ CCGTTCAACGCGAAGGTGACAAGTTACCAGCGTAA 85204 32 100.0 34 ................................ ACGTTACCCGGCCCCGCGTTATAGGCTGCGAGTG 85270 32 100.0 34 ................................ TACTACTGCAAATGACCAAATGAACGGTAAAGAT 85336 32 100.0 34 ................................ CAGTCATATATTCCTTCATAATGTCTGCAAATAA 85402 32 100.0 34 ................................ ATAAGAATATGATGCTAAACCCGACAATCATGAA 85468 32 100.0 34 ................................ GCATATGGCTAGAGAATGGGCATGTCGGGTTCCT 85534 32 100.0 34 ................................ GCGAAAGTCGCACTCAAGCATCTAGCGGGCGGTA 85600 32 100.0 34 ................................ GACGTGGTGGCGGAAGATACGCCGATTGACGAGC 85666 32 100.0 34 ................................ TTCACGGTCGACATCAACACGATCGACGGACTCA 85732 32 100.0 34 ................................ ATCTTTTCTTTTGCTACGTCGAGTGCCGTTACTT 85798 32 100.0 34 ................................ CGCTGCGTCGACGTCCAACAGTTTGACCGCTTCC 85864 32 100.0 33 ................................ TCTTCGATTTTTACCATTGCGTATAGCGCGGCA 85929 32 100.0 34 ................................ GTAGACGGACCAATGAACTCGATGTTGAGCATCG 85995 32 100.0 34 ................................ TGTTGCGACTGCTTCCGTTGTTCGAAGTCCGCAC 86061 32 100.0 35 ................................ TGCGGACGGCTCTTTGTCGCTCTCGGAGATGACGC 86128 32 100.0 34 ................................ TACGCCACCGAACGCTTGTTGTGTCCGCAAGCCA 86194 32 100.0 33 ................................ CAAATATGCAGGAACGGACGCGTAGGCATATAA 86259 32 100.0 34 ................................ TGTCCGCATTACGCTCCTCATACTCTTCGCATAG 86325 32 100.0 34 ................................ GCGTTCGGCCAGCCCTGACCAGGTCGAGGACCAT 86391 32 100.0 33 ................................ CCCGACCCCCAGACGTACGTCCGGAAGGTCAGC 86456 32 100.0 34 ................................ ATCGAAACCGTACCTTTAAGCTGAATCACGTCGT 86522 32 100.0 34 ................................ ACCGAGGACGAGTATTTTCAAAACCTCCGCTATA 86588 32 100.0 33 ................................ GCCGTCCGCCGATAACATATAAAGAGCAAGTGC 86653 32 100.0 34 ................................ CGGCGCATCCAGTGACTTGGCATTGTCGAGCAGT 86719 32 100.0 34 ................................ TTTGATATTCCAACGATGACGTTACACTTCTCAC 86785 32 100.0 35 ................................ AACTGCAACATTGACGTAGGCATCAACCTGTTTAG 86852 32 100.0 34 ................................ TTCGGTTGGACGTATCAACAATAAAAAAATAGAT 86918 32 100.0 35 ................................ ATGGACGTGAAAAGACGCTCTCGAAAGGGGATGTG 86985 32 100.0 34 ................................ AACGTATCGGCTTGATTATGCAGAACGAGGACGG 87051 32 100.0 35 ................................ TATTGAATCGTGCCAAAACCGGTTGGCTCCGCGTG 87118 32 100.0 34 ................................ AGCGCCAACCAAGCGATGGCGGAAGATTTGATTG 87184 32 100.0 35 ................................ TATTGAATCGTGCCAAAACCGGTTGGCTCCGCGTG 87251 32 100.0 34 ................................ ATCATGGATCACAACCTGTCACTATCACCCGAAT 87317 32 100.0 33 ................................ ACCAACAAGGACACAAAGGTCAGCATCAAGAAA 87382 32 100.0 34 ................................ ATTCGTTAAGTGCGAGGACACGATCACATATTTG 87448 32 100.0 35 ................................ CACGTAATTTGCGTAATTGCCGTGATATCATTGAT 87515 32 100.0 34 ................................ GCCGAGGTGCAGCAGACGGTCGTCAACGAAGGGC 87581 32 100.0 34 ................................ GACAAATAAAGGCTGTAACGTCCGCTTCGTAGTT 87647 32 100.0 32 ................................ AAGGCGTTCACGGCTGAAATCGCAAGCGACTT 87711 32 100.0 34 ................................ CCAATGATGCACCTTATTCGAGTCCGCATAAAAC 87777 32 100.0 36 ................................ CTCGTATCTCCGTTAAATGCGATTGGAGACGCTATT 87845 32 100.0 35 ................................ CTGTTGGTATCGGTTTGATGGCTATCATGCTTGGG 87912 32 100.0 33 ................................ TATTCTGCTAAATTTGCAATGTCCGTTATTAAC 87977 32 100.0 34 ................................ ACATGATTACAATTTACATCTACCGCGTCATTTA 88043 32 100.0 34 ................................ TGCAATTGCGTCCAGTAGAGACCAGGTGTTTGTT 88109 32 100.0 35 ................................ TGATGCTTCTCGTCTTCCTTGTCAATCTCTTCCCA 88176 32 100.0 34 ................................ TTGGACTGCGCGTCCGACCATACGCACGAATACG 88242 32 100.0 34 ................................ TTGTGTGAGTTGCGCATAAATCTGAGTCGTTGCA 88308 32 100.0 33 ................................ AAAAAAGGGACACACTATCCGATCATTTATGGC 88373 32 100.0 34 ................................ AAGAAGATGACAGGCGCACGCACTTAATAAGCAA 88439 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 71 32 100.0 34 ATCGCACCTCGTGTAGGTGCGTGGATTGAAAT # Left flank : CATCTTTCTTGTATAAGTGAGGAATGAAAAATGCTTATTTTAGTAACCTATGATGTCAATACAACTTCACCTGGCGGGACGAGACGTCTTCGTCAAGTGGCCAAGGTATGCCAACAGTATGGGCAACGCGTGCAAAATAGTGTATTTGAATGTATAGTCGATCAAACCGAATTTACATCATTGAAATTACGGCTAAAAGAAATTGTAGACATTGAACGGGATAGTCTTCGGTTTTATCGATTAGGAAATCATCATGCTTCTAAAGTTGAGCATGTGGGCGTAAAAGAATCTTTAGATTTGGAAGGTCCTCTCATTTTTTAAAATTCGGGATGATTTCAATTCGTGCGAAGCTAAAGTGAACATGATTTTCTAGAGGGGTTCGCACCTAATTTATCCTGTAGAGTTAATTGATTTTGTAGTATTTTCAGAAGATAACGTCCTTTAAAGGATAATATTTCCTTGAAAATTGTTTTAGTCGATTGATTTGTCTAAAATCGGCT # Right flank : TTAGACTTGTGTATTTGTAGAACAGAAGAAAACAAAGTTTGCGCCTCACGTTAGTGAATAATTTGAAATTTCGAATTTTAAAAAAGCCGTTCTGAATCAATCATTCAGATCGGCTTTTCCATATTAATTCGCTTGTTTCAATTCTTCAACAGCTTCTACATTATCATCGAACTTCCGTACATCCACGCGTTTCACGAAAAATGCTAAAACAAGCGCCAAGAGGTTCATCCCGAGTGCGACGTAAAATGAATATTGAATCCCGGATAAGAGGGCTTGCTGAGTGATGGCACCCATCGAACTCTCTGTGAGCGTCGCAGGATCGACTCCTGTCATCAATGATTCAGCTTCCGTACGTGTCACCGAGTTCATGATGGTCACGAGTACTGCCGTACCAATCGCACCGGATACTTGTTGGGCCGTGTTGTTGATGGCCGTTCCGTGCGGGTTGAGGCGAGTTGGCAATTGGTTCAGTCCATTAGTCATGATGGGCATCATGACCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACCTCGTGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1967814-1969217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIVAC010000001.1 Exiguobacterium aestuarii strain AmN35-10 AmN35-10_ctg0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 1967814 29 100.0 38 ............................. TGCTTTTCCCTCCATTGTCGACACATCCGATGTGGCCC 1967881 29 100.0 41 ............................. TATCCAAGGCCATATTAATAAGTTCCTTGGCAGTAGCTATA 1967951 29 100.0 38 ............................. CTGGGCCACGCTGTACGAGCGTCAAGGACGGCTGAATG 1968018 29 100.0 43 ............................. CACGCCCTGGCGTGCATGCTCGGTCGATCCGGCCCGTTGCCAG 1968090 29 100.0 39 ............................. GCGACCCATGAGCATTGCTCGAAGTTATTCGGGTCATAA 1968158 29 96.6 38 .......T..................... TGGCGCAAGAACTTCGCCGCTTTCTTGAATTCCATCGG 1968225 29 100.0 39 ............................. TCAACTCGTTCGAGCGATATTCTTCCGCGGAAATCTCGA 1968293 29 96.6 40 ..............C.............. ATAGGCGATATGTCGCTCTAAGAGACGGATGCGATGGAGC 1968362 29 100.0 40 ............................. GAACATAGACAAGATAGTGAGTGATAGGACGATACGTGAT 1968431 29 100.0 40 ............................. ACGGTTCAATTCGCGACGTGCTTGATACATCTTGTTTCCT 1968500 29 100.0 39 ............................. TCCATCGCGCGACCCTGTTTCGCAAACTGCCATACCCGT 1968568 29 100.0 39 ............................. ATGATAGTGATTGTACGACGTGATTGAACGAATTGTTGT 1968636 29 100.0 40 ............................. ACACCTGAAGGAGGCGCTCATGGCCACCAAGGGGACGGTC 1968705 29 100.0 43 ............................. TCCTTGACGACCTGCTCGATTTCAGCTCCAGTGAAGCCATCAA 1968777 29 100.0 39 ............................. TCTTACTCATCTAAACCAACTCCTCTGATATGATTCCCC 1968845 29 96.6 40 ............T................ TACGCGCTGATTGTCTCGATGTTGTTCAAGGCCATCGCGT 1968914 29 100.0 41 ............................. TGACCGATGCCGACAAGTTGAATGATTGGTGCTTAGGCCCA 1968984 29 100.0 40 ............................. GGTTTCGGCTTAGGCTTCGGTTTTGGAGGATTCAAAATTA 1969053 29 96.6 38 ............................T CACATTTTCAACGCGAAGTTATACATTAGGCTCATTCC 1969120 29 93.1 41 ....A..T..................... GTGAGATACTCTGCCCACACGTCCTTGTCATGGTTGATGAC 1969190 28 75.9 0 .......T....T.....A...-...TGT | ========== ====== ====== ====== ============================= =========================================== ================== 21 29 97.9 40 CTTTGATCTTTCCTTAATGGAATTGAAAC # Left flank : TTTTCAAACAATGTCCATTCAATTTGAGAATCCGCATAGTGATACTCAATGACTTGGAAGGGAAGATTCGGAAAGCGCTGACTCAACTCAGTTTCAAGATTATTTAGATGTGTCGCTTTCGCTTGTGGAGTCACCATTAAAATCAATTCTTTTACTGGTTCATGAGCAGCCAATAGTTCAATCAGTGCAACAGGCATGTAGCGCGTTGGTTTCGAAGGAGTAGTCCCATCAAAGGAATATGAAGTTTCTTGATAATCTCCTGTTCCTACAAATGAAAATAATTTCATCATTCACCATCCTAACTGTAAGTGATTAAACGTTGTATGAAGTGAATTACGATAGGGAAATATATGTATTTAAACATGTAATGTTTACCTTTAATGATACTGTTTTTCTATTTATATGTATAGAAGGATTTGTCTTTCGATTTTGAGTATGATTAAATAGATTAAAGGGCTTAATCATCCTATAATTATGGGATTTTTCACACATTTAAGTGC # Right flank : TTACGAAACAAGTTAAGTGAGAATATATCACTAGAATTTCAATTTCAGAATTGTTTAGCGTCTTTGAAATTACTCGAATATCAAAAGCTCTCATTACTCAAAACCTCGTAGAGATCATCATAGCGCACCAAAATAAACATTCACCTGGCAACACTTGCCACCAAAAGGTGGTCCATTATACTTCTGTTAAAACAATGACGCCAATGAGAAATCTCCCATCGGCGTCATGATTATGAAATGTATAAAATGAACATATTAGGTAAAATATTTTTATATATTGGTAAATCTTTAAGGGATGGTAATCTTGTAACCCTTATAAGAAACTACAGCGGACACTGGGAAAACAAAGGGACCATAGATAATGAAGAATGGACATGAACTGATTGGATCAAGTTTCAACCCATCTATATACATGTGCTGGAGATTTCAAGTGATTATGTAATCGTGCTATCTAAACATAAGAATACGAAATCGATTGACACACTGAAGTGTTGTAGTCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGATCTTTCCTTAATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //