Array 1 100707-102319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQY010000010.1 Gordonibacter pamelaeae strain DFI.1.107 HDAHMJLP_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 100707 36 100.0 29 .................................... TTCATGAGCCGACGCGAATACAAGATGAT 100772 36 100.0 30 .................................... CTACACGCTTCGCGAGTACACCTTCAAAGG 100838 36 100.0 30 .................................... CGTTGCTTTTGATGCTGTTATTTTTGCTAT 100904 36 100.0 29 .................................... CGAAACTTGCCATAGAATCACCCCCTGTT 100969 36 100.0 29 .................................... CGCAGCGAGCTTGGCAAGGTGGACGAGAT 101034 36 100.0 30 .................................... CTTGTATCACATCACTATAGGTGTATACTA 101100 36 100.0 30 .................................... CCCACGTTCCCCTTCTCGCCTGCCTTTCGT 101166 36 100.0 30 .................................... GGTGAAGGCTCTTATGCTTACGAACCCGCC 101232 36 100.0 30 .................................... ATCGTCGAATATCATAATGAGGATCCTTCT 101298 36 100.0 30 .................................... CATAAGCGACAATTGGTACTAAGGAGGGAT 101364 36 100.0 30 .................................... GGCCGAACTCGTGCTCGCGCTTCCAGGCTC 101430 36 100.0 29 .................................... AGCCCAGGCCCATACTCGGCAATCATCGG 101495 36 100.0 29 .................................... TGCCCCACGTTCTGTCGGAGCATCCAATC 101560 36 100.0 29 .................................... CATCACGAAGTTTACGAGCCATCTTGAGA 101625 36 100.0 29 .................................... CTAACGCACAGGCAGAGGCGAAAGCCGCC 101690 36 100.0 29 .................................... AGAAGATGGTTATGGGCTACCTGTGCATC 101755 36 100.0 30 .................................... TCACGACTTTCCTGTTCTCGCCCGCCTTGA 101821 36 100.0 30 .................................... ATCCTCTCGTTCATCCGGCGCGCCAGCCGC 101887 36 100.0 30 .................................... TGTTCGCTCATGCCGCATCACCGTCTCCCA 101953 36 100.0 30 .................................... GCGCCGCATCATCAAGCTCGAAGAGAGCAG 102019 36 97.2 30 ..............G..................... CGCCACGCTCACGTACTTCCACGGATGGTC 102085 36 94.4 31 .......G......G..................... GGAAGTGGCGAGCTCGGAAGATGAACGCAGC 102152 36 91.7 30 ..............G.............G....G.. AAACGGCTGATACGCTCGTTGCATGCGCTG 102218 36 80.6 29 .......T..G.....G...C.....T..A....G. TAATCTTGGGCGCGTAGCCTTCGGTAGCC 102283 36 75.0 0 ..........G...G.TGG.G.......G.A....A | T [102316] ========== ====== ====== ====== ==================================== =============================== ================== 25 36 97.6 30 GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Left flank : ACTTATCGGCGAAGTGCTTCAGCGTGTGGAGGGCATGTTTCTCTCTGAGGATGATGTGCGTCAGGAGATTGAGACGGCGGGACGAACACTATCCGAGCGGGTTGCCGCTTTGGGGTTGCGGCTTCAATCGGACTATGCTTTTGACGTACAATGGGAGATGCGGAAGTATCTGAAAGCTTTTGATTTCAGCGTTGATGTCGATTCTTCCGACACGCTCCTTGACAACCTGATAAAGTTCTTGAAGTTTGCATCCGACGCGTCGTTTAAAAAGCAGTTGGTTTTCGTGAATTTGAAGAATTTTTTGGAGACGGAAGAGGTTCAAGAGTTCTATCGGCAAGCGATTTTTTCAGAATTGAACGTTCTGCTGCTGGAGAACGTACCTGATGGAGCGAGCTTTGAGTTCGAGAGAAAAATGTGCATTGATAAGGACTTTCTTCAATCATGAAGAAGCCCGCCAGTCGGCTTGTCCATCCTCCTGCAGAGAGGATTTTGCCCCAACG # Right flank : ACGAATAGGATGACCAACCGGAGGGCATCGCTTTAAGATACAGGGGTGGGAGGGTGTGAGGTTGGATGCGTCTTCCGTCGTCGGTTAACAATTGCCGGTGGTTTTCAGGGCGATTGCCTGTACCATAATAGGGATAGATAGTTTATACTCGCACGTAGGGATTGCAAGCGGACCTGTTGCGAGGAGGAACCATGGCCGTCAACCGTCAGAAGCTCAAGCTGCTGTATCTCATGCGGATGCTCGAGGAGGAGACCGATGCCGAGCAGGGGCTCACGATGGCGCAGATCCTCGAGCGGCTGGAGGCACAGGGCATCACGGCCGAGCGCAAAGGCATCTACCGCGACATCGAGGCGCTGCGCGAGTTCGGCTTGGACGTGCGCACCTACCAGCGCGCGCCGGTGGAGTACGCGCTGGAGCGGCGCGACTTCGCTTTCCACGAGCTGTTGCTGCTGGTGGACGCCGTGCAGAGCTCGCGCTTCCTCACGCAGCGCAAAAGCGAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 27412-27048 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQY010000012.1 Gordonibacter pamelaeae strain DFI.1.107 HDAHMJLP_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 27411 32 96.9 34 ........................A....... CGAAGGCGCACTTGATGACGAAGCGATCATGCGC 27345 32 96.9 34 ........................A....... GGCCGGCGGGAGGGGCGCCGCGTGGCGCTGCCCC 27279 32 100.0 35 ................................ ATGATGCAATCACTTACCATCTGCGGTAGCTGCTG 27212 32 100.0 36 ................................ CAGAAGATCGTGCAGGGCCCCCAAACGCTTTCCATG 27144 32 100.0 33 ................................ AAAAACACGTCGCCAACAGTCATTAAAGATATG 27079 31 87.5 0 ..........-.C.....T..C.......... | C [27066] ========== ====== ====== ====== ================================ ==================================== ================== 6 32 96.9 35 GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Left flank : GGCCCCTGCATCGGCTCGGTCGGGCTCATCCCCGACCCGCAGCGGCGCAACGTCGATGCCCTCATGCTGGGGTACTCCCTGGCGAAGCCCGCCTGGGGCCGGGGCTACATGACGGAGGCGTCGCGTGAGGTTATCCGCTACGGTTTCGAGGAGCTGGCCCTCGGCCTGATCTCCTGCACGCATTACCTGTTCAACGACCGCTCCCGACGCGTCATCGAGAAGTGCGGCTTCGAACGCGAGGGCGTCATCCACGCCGCCGAGCCCGCCCCCGACGGCACCATGCAGGACCTGGCGACGTACTATCTGACGCGCGCGTCATGGGAGGCTGCCTCGCACGAGAGCGCGCGAAACGGCGCGAACCCGAAGCTCCGGCAATCCACTCAAGAGGTTCGCGCAGAATGACACGTTCAATGGTGCTGCCTGCTGGTTGCGCGAGGTGCTACGCATGTTGAAAAATGAATACTATAAGTGAAAAATGCACTATCCTGCATAAACTACCA # Right flank : TGGGATTTCCGCAACGTGCCGACGAGGAAGCAGGTCGAGCCCTCACAAGCTCGCGGGTTGGAACGAGCGCTCCCACAGTGGTTTCTTGCAGAACTGGTTGATCATGGCGGGCTCTTTCGCGAAAGCGGCGCCGCATGCGTCGATGGACTGGACGGGTTATTTTCCTTCGAAGACGATGCGGTTGCCGAAGCTCGCCCGCCCGACTTCGCGCAAATGCTATGGCGCACTCCTCGACGGGCGGTTGCAGCGAGCGGCGAGCTGGCTGGTGCGGTCCCTGCACTGGCAAGGAGGCTCAACGAAGGTTGGAGCTTGCGGCGACCTCCAAGCAGTTGGTCTATAATTCTCGTTCGTAGAAAAACGGGGGAAGGGAATCCATGGCATCGGAGAAGCAGCAGGCGGGGCGCGCCTTAAGGCGGTTGGCGCGGAGGAGCCCGCTTGTCGCCCTCGCCATTGCGGCCGTGCTCGTGGTCGGCGCCGCGCTCGGATGGTTCGGCGCTGCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Alternate repeat : GTCGCGCCCCATAGGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //