Array 1 8242-7360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEMV010000028.1 Flavobacterium psychrophilum strain V46 Contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 8241 46 100.0 30 .............................................. AAAAATAAAAACATGATGCACGTTCGTGGA 8165 46 100.0 30 .............................................. AGAGCTTTTGCAAAATCTAGCAAGGCTATG 8089 46 100.0 30 .............................................. CACAAACAAATGAGGTTCCAACAAGTCTCG 8013 46 100.0 30 .............................................. TTCGGCACCCTTACTGAATACCAAAATGTA 7937 46 100.0 29 .............................................. ATAGAAATATTAGATATGATGCTTAGTCC 7862 46 100.0 30 .............................................. AGAGTGCGATGAGTTATATCGCAACAATAA 7786 46 100.0 30 .............................................. TCTCAAATTTAAAGGAGTGTAATTGCGTGT 7710 46 100.0 30 .............................................. AGTGCGTGTGCTAATTCTTCATCTTTAATA 7634 46 100.0 31 .............................................. TGGTTCGTGTGGTTTGGAAAACAATTGCGGC 7557 46 100.0 30 .............................................. AGTCATGGGTATATCTAAAAAAGCGGTCGA 7481 46 100.0 30 .............................................. CGTTTAGTGTTTGGCAAATTACACGCTCTG 7405 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 12 46 100.0 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : | # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGCTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1505-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEMV010000305.1 Flavobacterium psychrophilum strain V46 Contig_305, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1504 46 100.0 29 .............................................. TTTTTACTTGCATGTTAATTTTATTAATG 1429 46 100.0 30 .............................................. TGTGATTTCGTTTTGCGCTCTGAATCCTAC 1353 46 100.0 30 .............................................. GTATCCAGCGGTTAAGATACCAGCGTTTAT 1277 46 100.0 30 .............................................. TTACGCGGTGAGTGGTTGCTGCATAGTCCA 1201 46 100.0 29 .............................................. CCGCATGATTATTTAAGCAAGAGCGACTT 1126 46 100.0 30 .............................................. TGCAAAGGCGAACTGTCAACTGACGAAATT 1050 46 100.0 29 .............................................. TTTGATGTAGCTAAAATTGCCATAATGTA 975 46 100.0 30 .............................................. TTAGGTTTAGATTTGATTTTGCGTACTCCT 899 46 100.0 30 .............................................. GAGTAAGCGCACCACCGTATGGAGTAACAT 823 46 100.0 30 .............................................. ATCGGGTCGCATTCGGATAAATCGGTAGGT 747 46 100.0 30 .............................................. TAGTAGTATTTTTTGCTGTTAATTGGCTCG 671 46 100.0 30 .............................................. AACTGCAAACCATCTTCAGGCTTCACTGCT 595 46 100.0 30 .............................................. ATTAAAATGTAGATTAACGCACACTTTTGC 519 46 100.0 30 .............................................. CAGTCAAGTACGAGATAAAAACGGATTACT 443 46 100.0 30 .............................................. CGAGTGCATTATAAATTCGGGGTGGTTCTT 367 46 100.0 30 .............................................. AGGCTCAAGTTATACCGATATGGCATTTAA 291 46 100.0 29 .............................................. TATTGAATAAAATTCTGTTGGTGTTAATT 216 46 100.0 30 .............................................. CCTAGGTGGTTAATTGATGCGGTTTGTACC 140 46 100.0 30 .............................................. TCGGTGAGGAAAGTGTTCGTTCTGTGGCTG 64 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 20 46 100.0 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : T # Right flank : CTTTTTACTTGCATGTTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [23.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 70-1483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEMV010000332.1 Flavobacterium psychrophilum strain V46 Contig_332, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 70 46 93.5 30 T....T...G.................................... TAACAATAGATCAATACGGTAGAACCGTTG G [72] 147 46 100.0 30 .............................................. CAATAATCAAATCTTTTATATTGATTTCAG 223 46 100.0 29 .............................................. TAGCGTTTAAATAGGTGCTAACGTTTCGC 298 46 100.0 30 .............................................. TCAGTATTTGCAATGTTTTATCAAATGGCA 374 46 100.0 30 .............................................. GCAGGGGACAATGTGCATAGTTCGGTTGCT 450 46 100.0 30 .............................................. GAAGTCCTCAGTTGCTTCAATCGAATTACC 526 46 100.0 30 .............................................. ATCCATCTCTATTTTTGTATTCATCTACAA 602 46 100.0 30 .............................................. CGTTTATTTTTTCATAGTCCTGTTCGGCTT 678 46 100.0 31 .............................................. TTGGCAATCCTATAAATGAATCTGTTTGGCG 755 46 100.0 30 .............................................. ACTAACGGATACCAATTACATCGATAATGT 831 46 100.0 30 .............................................. GAGGTGCTTCGGATGAAAAACAATAATTAC 907 46 100.0 30 .............................................. GAAGGAGATACATTCTTAATTGAAGATTTT 983 46 100.0 30 .............................................. AAGCGCACAACTTGCAATAGGCGTGATTAG 1059 46 100.0 30 .............................................. TACGTTGCTGTTTTAATTCAACGCTTTCTT 1135 46 100.0 30 .............................................. CTTATAAAGGCGCAAGAGTGGTACAAGGTA 1211 46 100.0 30 .............................................. CAAATGGGACAGCGGATTTGTTTATGCACA 1287 46 100.0 29 .............................................. TTAATCAAGTTTTTTTAAGAAAAAAAGTA 1362 46 100.0 30 .............................................. AAAGAGCTAATACAATTACACACAAAAGAA 1438 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 19 46 99.7 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : AAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCAAATGTT # Right flank : G # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //