Array 1 8726-11375 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSKF01000157.1 Klebsiella pneumoniae strain 20180138 11-20180138_S14_L001_R1_001_(paired)_contig_157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8726 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 8787 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 8848 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 8909 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 8971 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 9032 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 9093 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 9154 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 9215 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 9276 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 9337 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 9398 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 9459 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 9520 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 9581 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 9642 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 9703 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 9764 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 9825 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 9886 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 9947 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 10008 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 10069 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 10130 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 10191 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 10252 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 10313 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 10374 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 10435 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 10496 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 10557 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 10618 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 10679 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 10740 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 10801 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 10862 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 10923 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 10984 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 11045 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 11106 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 11167 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 11228 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 11289 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 11347 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3862-2924 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSKF01000155.1 Klebsiella pneumoniae strain 20180138 11-20180138_S14_L001_R1_001_(paired)_contig_155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3861 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 3800 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 3739 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 3678 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 3617 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 3556 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 3495 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [3442] 3441 29 89.7 32 ......T.....CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 3380 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 3319 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [3308] 3257 29 86.2 32 ...........CC..A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT TC [3241] 3194 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 3133 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 3073 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 3012 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 2951 28 79.3 0 ........T.A.CA.........-....A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 93.1 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //