Array 1 17959-17148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFV01000033.1 Halomonas axialensis strain ACH-L-8 contig33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 17958 28 100.0 32 ............................ TTAGTCAGTGTATTGCGCATATTCCACCCCAC 17898 28 100.0 32 ............................ AATCAAAATGGCCTCAATCTCATACTCAGCCA 17838 28 100.0 35 ............................ TGATGATGATGCCGAGCCCCCCGCCGATCCCCTAC 17775 28 100.0 32 ............................ ACCCACGCCGCACGCTGTGAAGCGTCCGGCAC 17715 28 100.0 32 ............................ AGGTAGAGCCACACGTAAAAGCGCAACGCAAA 17655 28 100.0 32 ............................ TGAAAATTCGGTCGAACGCGGCTTGGTCGATC 17595 28 100.0 32 ............................ GCTTTCCCACTGCGACTGCTCTGGGACGTTAG 17535 28 100.0 32 ............................ AACACAGAGTTACTTTTCCGTCTTCCATTCTT 17475 28 100.0 32 ............................ ATCTTGAGGTCATGTAATAAGCTCCTCTGGAA 17415 28 100.0 32 ............................ AACCTTGGCATCTACGCCAACTCGCTGTGCTG 17355 28 100.0 32 ............................ ATGGCAGTAAGCTGCGTAGCTGCATCGCCCAT 17295 28 100.0 32 ............................ CAGCTCACCCGCTAACAGGCGCTTGGTTGTGG 17235 28 96.4 32 ...C........................ ATGGGCCTGAGCTTCGGCATCAAAGACCTGGA 17175 28 96.4 0 ...C........................ | ========== ====== ====== ====== ============================ =================================== ================== 14 28 99.5 32 GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CCGCCCAGGCAGCTCAGAAACGAAGGGACGAGACACGCCGGGAGCGAGGGA # Right flank : TTGAAATATCCAAGAGTGAATGGGCTTTTCTCTTCATTGTGTCGCGGACCGTTGGGTGCGTGGCCGCGCATCAGAAATTCCGCAACTACTCCTTCTCCTCATCCTCATCCTCATCCTCATCCTCTTCCCAGCGTTCGATGGCGCGTTTGTCGTCGGGGAGTCGCACCATATCGCCCACGTTGAGATTTTGGTGTGACTGAAAACGGTGGCCGCGTTGGTCGAGAATGGCGGCCACGCTGCCAATGCTCACGGCATCTTCTTCGCGGTAGGCTTCTACTTTGACCCGCACAATGCGGCCTTGGTAACGGGCGGAAAGCACGGCACCTGGGTAGGGGGGCGTGTGTTCGGGGTCGTCCTTGAAGAGGGCTGCTATGCTGGCGCTGCCAGGCTCGTCCCATTCAATGTGCTTGTGCATGGTGAGCGTCCTTACTATGGGTGAATAAAAATAAGAAGGCTCGTTAAGTGTAGTGTGCGTTGGCAGAACTCGGCCAATCTAATCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1918-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFV01000034.1 Halomonas axialensis strain ACH-L-8 contig34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1917 28 100.0 32 ............................ TCCACCTCAGCCTCGCTCTTGCCTTGGGTGCT 1857 28 100.0 32 ............................ AGCACGCGGCGCTCATCTGCCGACAGCCGCCC 1797 28 100.0 32 ............................ AAGAAAATCTTGGTCGGGCAGCTTTCCGCCAG 1737 28 100.0 33 ............................ CTCCAGGCCGGGCACAAGCCCGGTCAGCGTGTC 1676 28 100.0 32 ............................ AGAACTGAGCGATATAGGCGCGGGCAATCAAC 1616 28 100.0 32 ............................ AACCACCGCTCCAATATCGTCTTCGCCGTGGG 1556 28 100.0 32 ............................ GTCCGGCCCGTCAAGGGGCCGTGTCCTCGCTC 1496 28 100.0 32 ............................ TCCTGGCGGCGAGCGTTTTCCTGAGTCTGCTG 1436 28 100.0 32 ............................ TGAACGCGACCATCCTTATCTTTGATCTTGTA 1376 28 100.0 32 ............................ ATCAGCATGGATAGGCCACTGGCGGTCTGTCC 1316 28 100.0 32 ............................ CACACGTGAGCAAGCACATCGCCCATGGACCA 1256 28 100.0 32 ............................ CAATCCAGAACCTCGCTTCTGCATCCTCTTGC 1196 28 100.0 32 ............................ TGGCGAATCCTCAATTGAACCGGTTGCAACTG 1136 28 100.0 32 ............................ TTATCCAGCCCTGGCCGACTCATAATAAATCT 1076 28 100.0 32 ............................ CGGTGAAGGAGGGCGCCAAGGAGCGTCTGGGC 1016 28 100.0 32 ............................ AAAGGAGGCAAACCAGAATGGTCATAGACACT 956 28 100.0 32 ............................ AGCAGCGAACCCCATAGCTGCCAGATAGAAAA 896 28 100.0 32 ............................ GAACCCGTTTGACCGCCGCGTGGACGGTTTGC 836 28 100.0 32 ............................ TGGTCGAGCGCCGACAGAATCCCCGGATAGGA 776 28 100.0 32 ............................ TTGGGGAAAAGCCGCACCCACTGGTTGCACAA 716 28 100.0 32 ............................ TGGTCAGCATCACCGCCGTTCTGGCATCCGCC 656 28 100.0 32 ............................ TCGTACAGCTCCTTGGCAAGCCAGCCGAAGCC 596 28 100.0 32 ............................ ATGCAGCAATTCGTGGAAGGCGTAGCCGAACA 536 28 100.0 32 ............................ AGCTATCTGGTAGAGAACCAGGCTATTGAACT 476 28 100.0 32 ............................ ACCGCCGGACACCCGCGAAACCAAGCAACCGA 416 28 100.0 32 ............................ ATCCAAAAAGGCCAGCTTGTTCGGTGCTCACT 356 28 100.0 32 ............................ ACCGGCATCGGCGGCGCTGTCGCTGAGTATGT 296 28 100.0 32 ............................ ACCCGCATCGAGCGCCCAGAACTGCCCGCGAT 236 28 100.0 32 ............................ GTACACGCGGTAGAGCAGGGCGTCCAACGTTT 176 28 100.0 32 ............................ GGCTGCCACCGTTGGCCACCCACTCGATGACA 116 28 100.0 32 ............................ CGAAGGGACGAGACACGCCGGGAGCGAGGGAC 56 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 32 28 100.0 32 GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CGCCCAGGCAGCTCAGAAAATTTGCGCGTCGTCAGCTTCCAGGTGGGCCA # Right flank : ATTAGTCAGTGTATTGCGCATATTCCACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2101-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFV01000035.1 Halomonas axialensis strain ACH-L-8 contig35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2100 28 100.0 32 ............................ AGAATTTTCTTAGGCTCGGTAATTTTCAGATC 2040 28 100.0 32 ............................ TCGTCGGGTTCCGCCCCGCTTTTGCACTCTGA 1980 28 100.0 32 ............................ CTGGACTCATTCAAGCGATGGATCAAAGACAG 1920 28 100.0 32 ............................ ATTCGCGGATTTTGGCCTTGAAAACCGGATGG 1860 28 100.0 32 ............................ TGCATCCAGCAGGCGCGACCATTGCCGCTGAT 1800 28 100.0 32 ............................ GACCGCAAGTGCTTTATCCGTCCATTGCGACC 1740 28 100.0 32 ............................ TCGCCGCTGCGCGGCTGCGGGCCGCACCAACC 1680 28 100.0 32 ............................ AGTGGCACCACCGCCAAAGGCGGCGGTGGTGG 1620 28 100.0 32 ............................ ACACGGCCAGTTATTACACCCCTTTCCGTGGC 1560 28 100.0 32 ............................ GCCTGAGCGGCAATCAGGTTGCCGACCTCCAG 1500 28 100.0 32 ............................ ATTGTGGGCGATGAAAGACCCGCTGGACTTCC 1440 28 100.0 32 ............................ GCGTCGGTTATCTGGCTGAGCGTGTGCGCGTG 1380 28 100.0 32 ............................ TCCCTTATCGTCCAGTCCGGCGAATGGTCACG 1320 28 100.0 32 ............................ GGGGCGCGACTTGGAGCCTTCAGCGTTGCCAT 1260 28 100.0 32 ............................ ATAGCTGGAACGAGATTGATGGCCAGCCAGTT 1200 28 100.0 32 ............................ CAATAGCAATGACTCCCACTCTTCTTGGTCAG 1140 28 100.0 32 ............................ TGCACCTCTGTCGTCAAGCGGCTGTGCTTACG 1080 28 100.0 32 ............................ CGCAATAGAACGACACAATGATGAAAGCGCCA 1020 28 100.0 32 ............................ TGCTCAACAAGAAGGGCTACCGCTATGGTGGC 960 28 100.0 32 ............................ TAACCTTAAACCGGCCTGCTTATTGGCGGTTA 900 28 100.0 32 ............................ ATGAGGTACGCGATAGCACGGCCAGTATTGCT 840 28 100.0 32 ............................ AGACCATGGCGCTTCCGCCGTTGTGTCGTTTT 780 28 100.0 32 ............................ TAACGGCGCTTGCCCCCATAGTATGTCGCGAG 720 28 100.0 32 ............................ TTGTTTAGCTTTGCCCCTTGGTTACGCGCCAT 660 28 100.0 32 ............................ TAAAAACCGCCATTGGCAGCATTGACGAAAAG 600 28 100.0 32 ............................ ATAAAATTGAACGCCAAAAATAAAGGCTTATT 540 28 100.0 33 ............................ CGCGCAGGGCTTTGATAGCGGCGACGTCTTGCA 479 28 96.4 33 ...A........................ AGAGAGGCTGGCGACGTAGTTGTACTGGCTCAA 418 28 96.4 32 ...A........................ ACATCACCGGCCACCATTTGCGCGTCGTCAGC 358 28 96.4 32 ...A........................ AACGGGAAGCCGGGCACCTTTGGCATGGCCTT 298 28 96.4 32 ...A........................ TCCGGCTATGGCCGGAGCTGCGGCGGGCGGAG 238 28 96.4 32 ...A........................ CTGTCCGTTCTATCCGGCTGGCAGCCCGCCAT 178 28 96.4 32 ...A........................ GTTCCACCGTCTCCGCGATTGGGCGGTGGAGC 118 28 96.4 32 ...A........................ ATTTGCGCGTCGTCAGCTTCCAGGTGGGCCAC 58 28 96.4 0 ...A........................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.2 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : AGCGACTACAGCAGCTGATGGGTATGGATTGGCTGACAGGCATGCGGGATCACACGCAGGTAAGCGCAGTGTTGGAAGTTCCTGCGGGTGCTCAGCATATCAACGTGGCGCGGAAGCAGTTCAACACGGGCAGCGAGAGCCGTGCCAAGCGCTATGCCAAACGGCACAGCATTAGCGAAGAGGAAGCAAGGAGTATTTACGCCAAGGTGGCGGCACGACGAATTGAGCTACCGTTTGTGCAGATCAATAGTCGATCTACTCAACAGCGTTTCAGCCTATTTATTGAACATGGCAAACCTGCAGCGTCTTCATCGGAAGGCTCATTCAGCCATTACGGCTTGAGCCCCAGCGCCACCGTGCCCTGGTTTTGACCCTTTTTTCTAACATGAAAATAGGCAGCTAATAATCAATGACTTAGCGGTATTGCTCCTGAAAGGGTAATGCCGCTTTTTTTGGTGAAAGCTCTTTAACAATCAGCACATTAATTTTGATATACTCTA # Right flank : ATCCACCTCAGCCTCGCTCTTGCCTTGGGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //