Array 1 5944-4079 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFD01000180.1 Hydrogenibacillus schlegelii strain DSM 2000 scaffold54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 5943 31 100.0 35 ............................... TGGTGCTTTTCTCCCTTCTGAGTCGATGTCGATGA 5877 31 100.0 36 ............................... GGTCGTTCGNGAGCCAGAGATGCGTTAGCCACGTTG 5810 31 100.0 35 ............................... ACGTTTTGCGGCGAAATATAGAAGGCTGGCTATCA 5744 31 100.0 35 ............................... GACGGCGCGGATGCGGGAACGTATCCCGGTCGCTG 5678 31 100.0 35 ............................... TGGGGGGGGCCCGACGCCGCCGGCGCCGGCGGCTG 5612 31 100.0 36 ............................... CCTTCCGCAGTTGGGACAAAATAGTTCCCAACAGTA 5545 31 100.0 34 ............................... TGTTTCTGCTGCCCTTTCCCTCAATTCGGCTGAA 5480 31 100.0 35 ............................... GGCAACGCACGTTATACCCGGCGCGGCCTCATAGA 5414 31 100.0 36 ............................... GGAGCTGCCATCTTCCAGATCGACGTTGGACGGATT 5347 31 96.8 0 ..............................N - Deletion [5317] 5316 27 87.1 35 ----........................... GGCTTGCGGAAAATCAAGATGTAGTCTGCAAGGGC 5254 31 100.0 37 ............................... CTTCAACGGCGGTTCGGTATACGACACGCAAATTTTC 5186 31 96.8 35 .....T......................... GTGCGTCTAGGGCAGCGCCTAGGGCGTCTGTGAGC 5120 31 100.0 36 ............................... GAGTTACTACTGAAGCAAAATGCCCTGTTTGTGGCG 5053 31 100.0 36 ............................... TCAACGAGGACGAAGCGGTACCCTTCCGGCCGGGCA 4986 31 100.0 37 ............................... CGGCAAATCGCTCTGGCGTGATCGCGATCCCTGGGTG 4918 31 100.0 37 ............................... TCTGATTGCGAGGTCCTCAAAGTAGACGGGAGCTATG 4850 31 100.0 36 ............................... GGTGGAGTACGGCATCAACACGCTTATTTCGCCGTC 4783 31 100.0 37 ............................... CATTTTCGCTGCCGCGTCTATGCTTACGGCGACGGCA 4715 31 100.0 36 ............................... GGCCCGGCAATCTGGCTCCGTACGTGTTATGTACGA 4648 31 100.0 35 ............................... CTCTTATGTGTACATGGGCAAATATTACTTTTTGG 4582 31 96.8 39 ..............A................ ACGTTGTACGCCGTGCTGTCGTACGACTCGGAGTCTCGA 4512 31 100.0 37 ............................... ATCTCCCCGCATAATCATCCCAATCATGGATAAGCAA 4444 31 96.8 35 .....T......................... CCGTATCGTCTGGACACGGCCGCCGAAGCGGCGCA 4378 31 100.0 37 ............................... TTTTCACTTCTGGGCAATTCTTCTTTGCCCAGCGGTG 4310 31 96.8 36 .....A......................... TACGAACTCGATCTCCTCGTCCAATATTTTTTGTGC 4243 31 100.0 36 ............................... ACGATCCTCCAGAACAGCGCGGTCAGTTCTTTCCTG 4176 31 100.0 36 ............................... TTCATTGCTAAGACCAACTTTCCTACCTTGAACGGG 4109 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 29 31 99.0 35 GTTTTGAGCCTACCTTATGAGGGATTGAAAC # Left flank : TCACGTTTTACGATGCGCTGCCCATACCGGAGTCTGTTCAGATCCATTCGGATGTTATGAACGTCCACCATTCGGAATACTATCGCGACGGCAAAACTCCGCCCGCCGATTGGGATAGCCCTACGCCAATTCCGTTCATATCGGTGACGGGTCGATTCTTGATCGCGCTGGAAGGACAACCCAAATGGGTCAGAACGGCCTTCCAGATCTTGCGGCTGGCGTTTTGTTATGTCGGAGTCGGTGCGAAGTCATCGAGCGGTTACGGTCGACTTCGTCTGATCCTTGAGAAAGACGATGCTTAAGGATGACAGACATTCAAGCAATTATTGAGCTCATGTCGTCGATCTACGATCGTGCCAAAACCCCCGGGGATCGACGACAACTTGCTGTCTTTTGTATCCTGTGCTATACTTAGCCTAGCGCATTTTTCCAAAGCCTGCGATTGAGGGTCATTAATTCGGTAAAAGGGAAAAGCAAATTGATTATGCGGTGCTTAGTTA # Right flank : TCGTAGACGGCGGCGAGGCGCTGATCCACCGGCTATCGTTTTGAGCCTACCTTATGAGNCTACCTTATGAGGGATTGAAAAGTGGTGAGGGGATGTACTGCCCTCACTGCGGTGCGTGTTTTGAGCCTACCTTATGAGGGATTGAAACGCGTAAGTGAGCTTAGGGATCAGCTGATGCAATCGTGTTTTGAGCTTACCTTATGAGGGATTGAAACACGAAGAGCTCATCGGCGTCCGTCCAGGCGTGGCACGTTTTGAGCCTACCTTATGAGGGATTGAAACTTGATCTCCTTCGCGAGAAAGCGGTCCTCATATGTCAGTTTTGAGCCCACCTAATAAAAGGGATTAAAGCTATAAACAAAAATCAAAGTGGAGGGCAAGAAATGATTAATTCTCGGGAATTTATTAATAAAATTTTGCGTTACTGGCTTACTCTGGAAGCGTTGACGCCTCAAACAGCCGACAAAGCTCATCCCGATGACAAATTAGAACCGAGTTAT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAGCCTACCTTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 14751-13996 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFD01000228.1 Hydrogenibacillus schlegelii strain DSM 2000 scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 14750 30 100.0 35 .............................. AGGATGAGGAAAATCGTAAAGTCGAGCAGAATAAA 14685 30 100.0 34 .............................. GTCCAAATACCATCAAAAAGATATATCCTATTCC 14621 30 100.0 37 .............................. AGCGCCACCAGAACGGTCCCCGCCGCATGTAAAACCT 14554 30 100.0 36 .............................. GATCGAAAATCTAAGCATCTTAATTTTGCAGTCTAA 14488 30 100.0 36 .............................. CGATGCCCACCTCGCAAACGATTCAATGCTTTAGAA 14422 30 100.0 36 .............................. AGAATTGGTAAATAAGGGGGTCGAGATACTATGCGC 14356 30 100.0 34 .............................. ATGGGAGCGCGGTTGGGTCGTGACGCGCTGGCGC 14292 30 100.0 35 .............................. GGTCGTCATACACCAAGCACCACCTTCGTGGCGTA 14227 30 100.0 37 .............................. CGAGACTTGCTCAAGTATTTAGCGAGATAAAGGCCGA 14160 30 96.7 35 ................C............. GCACGGCAAAGGCGTCGACACCGGTTTCCGCCGGC 14095 30 100.0 40 .............................. TTGCGGCGATGGCTTTTTCCGGCGGGTTAACTTCTCCGAC 14025 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 12 30 99.7 36 GTTTGCAGCCTACCTATGAGGGATTGAAAC # Left flank : TCCGAATCGAGGCCGACTTCTGGCGCCTGGTCGAAAGTTTGCAGCCTACCTATGAGGGATTGAAACCGGAACGTTCAACCAGGCCACCCTGCCGGTTCCTACGGTTTGCAGCCTACCTATGAGGGATTGAAACGGATCACCCGGACATGCGAGACGTGTTGTTTCTGGAGTTTGCAGCCTACCTATGAGGGATTGAAACTGATCCGACGCAAGATCATGGCCGCGAAACTCGATCAGTTTGCAGCCTACCTATGAGGGATTGAAACTGTACACATAAGAGCACTTATGCGCACATGGGCAGTGTTTGCAGCCTACCTATGAGGGATTGAAACTGGTGGCGGATTGATGGGTTGGGTGTTCCAGGACCGTTTGCAGCCTACCTATGAGGGATTGAAACCGGCCGTCGTTCCTCTCGCGCTTCTTGTCGGCGGCGGTTTNCAGCCTACCTATGAGGGATTGAAACTGGCAATCAAGACAGTCCTCAGGGAACTGCTCGGGCG # Right flank : TCAACGCTGTTCACCTGTTCACGCGAGTCCTGAAACCGTTTGCAGCCTACCTATGAGGNCGTTTGCAGCCTACCTATGAGGGATTGAAACTCAACGCTGTTCACCTGTTCACGCGAGTCCTGAAACCGTTTGCAGCCTACCTATGAGGGATTGAAACGTTTTCGCCCGCCTTGAGGCCCGCGTCGATCAGCACGTTTGCAGCCTACCTATGAGGGATTGAAATCCAGCATGTTCCCATTTGTCTCGATGTTGACGTCCTATGCTCAAGAGTTCGTTCGCCAGGTAAAAAAGCGTTTGCAGCTTACCTATGAGATGATTTTAAAATCTGAATATATTTCAATTTTAGTTTTAGCAAGCGCGGTTATAATAACGACATGAGTTTGTGCTTTAAGAAAATATAAAGCATAAAATGCGTGACCGTATTGACAAATTTAGATCGTTGTCGGCAGGATTTTTCTTGCTTGCGAAGAACTACTATGATCAGACGGATATCTTCAATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 18797-19586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFD01000220.1 Hydrogenibacillus schlegelii strain DSM 2000 scaffold14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 18797 30 96.7 31 ............................C. GGAGATCAGCCGGGACAGACATCTCCCGGCG 18858 30 100.0 31 .............................. CTGCGCTCCAGTTCCGCCTCGACGAAACCGC 18919 30 96.7 31 .............................G TAAAGCAGCGTTGGAGCCAACCGCCGACGGA 18980 30 96.7 31 ............................G. GCCTTGTTCAGCACGTAGATCAGCTTGTCGC 19041 30 100.0 31 .............................. CGTCGGGGGTGATGCCGAGCCGCTGGAAGAG 19102 30 96.7 31 ............................C. TTAGCCTCACTAACTTCTCCACTTACAACGA 19163 30 100.0 31 .............................. TGTTCGGAGTCAAAGCGGCTGTGTCGCTAAG 19224 30 93.3 31 ............................GG AATCGCCGCCGGAGGGAGTGCCTTCTGAAGA 19285 30 93.3 31 ............................CC CGCTTAATCCGGCCAATTCGGATCAGCGGGA 19346 30 96.7 0 ............................N. - Deletion [19376] 19372 30 90.0 31 N...........................CC CCCGCTTAATCCGGCCAATTCGGATCAGCGG 19435 30 93.3 31 ............................CC GGATCACTGGGCGGTACGTCGACATCTTGGA 19496 30 96.7 31 .............................G GTTGAAAAAGACGATAGTGGAAGCAGTTGGA 19557 30 93.3 0 ..............T.............G. | ========== ====== ====== ====== ============================== =============================== ================== 14 30 96.0 29 GTTTCCCCCGCGCACGCGGGGATGGACCTT # Left flank : TTGATTCCCAGTATGATCGATCAGATTAAGGAGCTCATCCATGTCGGCGACGATTCTCGTGACGCGTAACGTCTCGGACCGGATTCGAGGGTTTCTGGCATCCTCCATGCTTGAGCTTGCCCCTGGCGTGTATGCCGCCGTTCGTTTTTCACCGGCTGTTCGCGAGCGGGTATGGGAAGTTCTCGAAGAATGGTTTGTAAGAGAGGTCGAGGCGAGTATCGTGATGGTATGGCGCGATCCCGCTCAGCCGGGCGAAATGGCCGTCAGGGTCCTCGGGCTTCCACCGATCGATGTTGTCCAACAAGATGGCATGCTGCTTGCCAGACGCCCCGGAATGTGGGAAGATGAAATAGGGAAGGAAAAGGGCTAAACAAGTCTTTTTGCTCAAGGCCTTTCTAACTCAAGGCCCCTGCGGACAGTAACCGCTGGGTTTGTGTTAAGAGTATATGTTCGTGGTTTCAAAAGTCCTATCTTAATCACAAGAAATAGGTATGTCAAGA # Right flank : TCCTGACCATAGCCCTGCAGTGGCTGTTCGACAACCCGATGAAGGCTATGTTGCTGGACCCTGAGAACATGGCCCTGGCGCTGGGACTTGTGAAAGGAGTTGGGTCGCGGTGAGCGTGACGTGGCGCCTGATCAAGTCCGGCCGCGAGGTCGGCCGCATCGAGCTGGGCGACGACGGCCAGGTCCGGGCCCGCTGGCCGGACGACATGCCGCGCGACAGGCAGCGGTTCATCGAGGAAGGCCGCGAGGCGGTCTGGAACCTGGGCTACTCGGATCACCCTCGGCCCGAGATGTCCGCCTGGCCGATCTACTGGCATGAGGTCTTGACCCTGCTGACGTCTTCCGGCTGGTGGGATCAGGTCGAAACGGACTACAAGCCGCCGGACTTCCCGATCTACGACGAGCAAGATAATCCGATCTACTACTGACGAGGCGTGCCGAGGCGGTTTCCCCCGCGCATGCGGGGATGCACCGTGGATACCCCACGGGGCGCAGCCGATC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.22, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCGCACGCGGGGATGGACCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20032-20301 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFD01000220.1 Hydrogenibacillus schlegelii strain DSM 2000 scaffold14, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 20032 26 100.0 35 .......................... GTGGATACCCCACGGGGCGCAGCCGATCCCGGCGT 20093 26 100.0 35 .......................... GTGGATACCCCACGGGGCGCAGCCGATCCCGGCGT 20154 26 100.0 35 .......................... TTAACAGTACTGGCATGGACGACGGCTGCCATGGT 20215 26 100.0 35 .......................... GCACGCCATTCTCGGCTTCTCGCACCTGCCTGAGT 20276 26 92.3 0 .........T............G... | ========== ====== ====== ====== ========================== =================================== ================== 5 26 98.5 35 TTCCCCCGCGCATGCGGGGATGCACC # Left flank : AAAGACGATAGTGGAAGCAGTTGGAGTTTCCCCCGCGCATGCGGGGATGGACCGTCCTGACCATAGCCCTGCAGTGGCTGTTCGACAACCCGATGAAGGCTATGTTGCTGGACCCTGAGAACATGGCCCTGGCGCTGGGACTTGTGAAAGGAGTTGGGTCGCGGTGAGCGTGACGTGGCGCCTGATCAAGTCCGGCCGCGAGGTCGGCCGCATCGAGCTGGGCGACGACGGCCAGGTCCGGGCCCGCTGGCCGGACGACATGCCGCGCGACAGGCAGCGGTTCATCGAGGAAGGCCGCGAGGCGGTCTGGAACCTGGGCTACTCGGATCACCCTCGGCCCGAGATGTCCGCCTGGCCGATCTACTGGCATGAGGTCTTGACCCTGCTGACGTCTTCCGGCTGGTGGGATCAGGTCGAAACGGACTACAAGCCGCCGGACTTCCCGATCTACGACGAGCAAGATAATCCGATCTACTACTGACGAGGCGTGCCGAGGCGGT # Right flank : CCGAAAAGGCAAGGCTGGTGACCACCTATGTCGATGAATGAAATTGGCGAGCTTGATGTCGTGAGGTTAAAAGATGGGCGGGAGGGAACGGTTGTTGAAGTGTACAATGTTCCCAACTGCCCGCTGGCATATGAGGTTGAATTTGACGATGGCAGATTGGAGACTGTACAGCTCTCACAGATTGACAAAGTGATTTGGAAAAGACGAAGCCTGTGAGATGGAACAACGATAGAAATTAACAAGAAGTTCTAACGCACGGAGGCGTGACGCAGTACTGTGACACCTGCTTCATCTTCAGGTTCAAAGAGAGATTTGGGATTAGCTTCGTGTCGCTAGCAAAGGAGGTTTTTTTACCGTTGATAGACAAAGATCGAAATGAGAGTTTACCGGATAAAATTGTCGCTCGGATCAACTTAAATATGATTCCTCAATTCATCCCACGCATTGAAGGCGAACCTTTGCCCAATCAGTTCCTTGCGCTTATTCTTGACATTGAAACG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCCCCGCGCATGCGGGGATGCACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //