Array 1 17247-16483 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALJP01000006.1 Haemophilus sputorum HK 2154 ctg120006325158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17246 35 91.7 30 .....T.G...-........................ TAATCGCACCTTGAGGATGACCTATGACAT AA,A [17237,17243] 17178 36 100.0 30 .................................... GATGTTGCATTACAGTACTCGCCACCAGTG 17112 36 100.0 30 .................................... AGCTATCCTTATACTACGTGGTTCTTTTTG 17046 36 97.2 30 .......T............................ AAAGCCCTTGCTGATACACTTACCGTATTT 16980 36 100.0 30 .................................... CCAGCTAGGTTCATTCCCTTTACTAACCAT 16914 36 100.0 30 .................................... TCTTTTACCTTTTTTAAGAGTTCATCATCA 16848 36 100.0 30 .................................... AAAGACTAACATTTATTCAATCAATCAGAA 16782 36 100.0 30 .................................... TCGGGTCTAGCTTGTATTATACGTTTTACA 16716 36 100.0 30 .................................... AATTTAAAAGAAGTTAAAAAGGTAAATAAA 16650 36 100.0 30 .................................... AAATTCAAAAGAGACATCATTAATCTTGAA 16584 36 100.0 30 .................................... GCGGACTAGCAATATTTGATACTGCTGTTC 16518 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.1 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : GCGCAAGAAAACTTCGGTTACTTTTTTGGCTTAAACATCTGTGTGATGTTGCTACTCACTACGATAAATGGTCGATTCGTAACAAAAATTGGTTCAGAAAAGATGCTAAGAATTGGCTTGGGTATTCAGCTTATTAGCGGCCTCTTTTTAGCTTGTGTTGCCACCTTTAACCTTGGCTTCTGGGCAATGGCACTCAGCATTCCATTTTTTGTCGGCACAATATCCACCATTGGCAGCAACGCTACCGCCGCTATTTTAGAACGCTATCCAGAAATGGCTGGCACGGCTAACGCTATTGCAGGCACCGCTCGATTTGGTATTGGCTCACTCGCAGGCTTCTTGCTTTCTGGCTTTGAAATCCAAAGCGAACGCCCAATGCTCTATGCCATGGCACTTTGTACGATTCTCAGTTTTGCTGCTTACTATTTCCTTTCTTGTAAAGCAAGTAAATAATAAAAAATAACAAGCGGTCAATTTTGACCGCTTGTTTGCAATAAAGT # Right flank : TGGGACATTTAAAAGCCCCATACCGCAAGGTTTCGGGGCTTTTTTAGGCTTTTAAAAATGAGGCTAGAAAAGCAATAATTGATCTGAATTGACCTTTTTTTCTTGAAGTTTTTGCTCACCAACTAAAATTTCCATATTCGCAAATTGTTTCTCTGTAATAGCCAAACAACGAATTGAACCTTCTTCTGGCAAATGAGTAACTAACCTTTTATGGTGTTTTTCCATCGCATCTCGACCTCGAATAATCCGAGTATAAATAGAAAGTTGTAACATTTGATAACCGTCTTTTAATAGAAATTGGCGAAATTGGTTTGCAGCCCGCATTTTAGCTTTAGTAGTTACGGGTAAATCAAATAATACGATCATACGCATAAATATCTCCTTACTCATATTGATACTCCTGTAATTCGCAGATCTCTGGGAGTTGTAATAAAGTTGCATTTTTCTGGCTTAACGCAGCTTGAAAAGATGCGATTGTTTTATCAATTGCGGTTAAAACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 64086-62420 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALJP01000012.1 Haemophilus sputorum HK 2154 ctg120006325161, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 64085 37 100.0 32 ..................................... CAAAACCAGTATCGGCAAAGATTGCTTTTAAT 64016 37 100.0 35 ..................................... TCGAACATCTCCTGTAATGTAGTTTTTAAAGCCTT 63944 37 100.0 32 ..................................... TTTAGCGCGCGTTCAATCATAAACTTTTTATT 63875 37 100.0 33 ..................................... CCTCAAATCTATCCATATAAACAGCAGTTTTGT 63805 37 100.0 33 ..................................... TCCGTGACTGGGTCAAGATGAGCGACTCCATCG 63735 37 100.0 35 ..................................... GTAAGACTACACCTAAAGATGCCACAGTAGCTACA 63663 37 100.0 35 ..................................... ATCACTTTACATGGTATAGTAATAATAAAGTCATC 63591 37 100.0 33 ..................................... ATTTTTTGCCTTTATAATTAGTAAGGCGTAGAT 63521 37 100.0 34 ..................................... ACCTTATCGTGGTTTTAGTGCACTACCTTGTGGA 63450 37 100.0 34 ..................................... AAACGTAAAGCTGCATTAACGGCTAAAGCTTGTA 63379 37 100.0 34 ..................................... CAAACAAATCAGTAAGCTAAATGGTGAAAGTAGT 63308 37 100.0 33 ..................................... AGAAGATCGACATTTTCTTAGCTTGTTGCATAT 63238 37 100.0 33 ..................................... ACTATATCCAAGATGGTGTCAATCTCTATAAGG 63168 37 100.0 34 ..................................... CACCGAATTCATGATGGTTTTTAAGTTTGTAGAA 63097 37 100.0 31 ..................................... TGCACCCCCGAATCCTTCTGCACGACGCGCT 63029 37 100.0 36 ..................................... CACTAATCCGGCTTTTAGTTTATCATCAACCATCAT 62956 37 100.0 33 ..................................... AAACGTAGTCGTTACCAACCCAACCTTCTTTAC 62886 37 100.0 35 ..................................... ATAGGTGTAGTTACGCAAATTTCGTTACTTAAAGG 62814 37 100.0 34 ..................................... GTGCTTTGAGTTTTCGTTATCATATTGAAAATTA 62743 37 97.3 35 ....................................T GTAGAATAGTTAAGGTTCAAAGCCTCTTTTAATGT 62671 37 97.3 36 ........G............................ ATGATGGTGTTTTGTACATTAGCTGGCACATTAGAG 62598 37 100.0 35 ..................................... GTTCTTGGCGCTCACGTTCTTGGCGTTCAATATCG 62526 37 97.3 33 .....................T............... TCTTGGCAATAAAACTGTACTACATACGGATTT 62456 37 83.8 0 ....................CAG........A..A.A | ========== ====== ====== ====== ===================================== ==================================== ================== 24 37 99.0 34 GTCGTAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : AAGACGTTATCTTTCAATTTTAGGAGAAGGTATGCAATATTTAATTGGCTATGACATCGCAAATCCAAAACGATTACAAAGAATTTATCGTCGAATGATTAATTTTGCTACGCCTATTCAATATAGTGTTTTTTTATTTGATGGTTCAGAAAAATTACTTAACAAATGTTTGGATGAGGTAATGACTATTTTCGATAAAAAAGAAGATGACTTACGCATTTATCCTTTACCGAGCAATAGTGCTCAATGGCGATTAGGGAAATCTTGTTTACCGGAAGGGATTATTTGGACAGCGATGCCAACTAATTTGACATATAATGCTAGCTAATTGCCCAAAATTTGGTAAAATGATCCACGTTTTCGACCGCTTGATGAGTAAATGAAATGTTAAATATTGTACAACATTTGAGCAAATCAAGACCCAACTATCTAAGTCTCGGAAAAAGTTGGGAAGTGGCTCTGGCAAGCCTTGTGCTGCAAGGCTTTAAGACCCCACTACG # Right flank : AGGAAACCCCAGTTAAAGAAACTGGGGTTTTTCAATTTTTATAATCTGATTTTTAATGTGTTTATTTATATTGATAAATATTGAGAGAAATTTTTTGTATATAAGAAATTGGTGTAAAACGTAAAAATAGAATGATAGAAAAGAAAGGGATTTGAAGTTGGTCCCCCCTGCCGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACCACTGAGCTAAGGGGGGAAAGGTGGCGGAATTATAGAGAAATTCCGCTCTGAAGTCTATAACTGCGCCTTTGGTCGTTGCAAAATTAACCGTTTTCACGTGGCTGCAGCAGAGAAAGCAGATCAACGGCAATTTTCAGATTATCTGTTTTTTGTACGCGTTCTACTTCCGCTAATAACGCAATGCCTTCTGATAGGCTCCATTGTGTTGGCATTGGTGCGTAATGTGCAAAAAAGGCATCAAAATCGACCGCTTGTTGGCTAAATAAACCCAATAAAAGCTGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 38370-39408 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALJP01000007.1 Haemophilus sputorum HK 2154 ctg120006325137, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 38370 37 100.0 34 ..................................... AACTTCTAAGCCGTAGTTTTCAACAAGTTTACGC 38441 37 100.0 36 ..................................... AATAACATCCTCAGGTGTTTCCCAGTTGACCAATTT 38514 37 100.0 33 ..................................... TTGTAACTTGTTTTTTAATTCATCTGCTTTTTT 38584 37 100.0 34 ..................................... TCAGATGGCGGATTTTCTAAAGCCGCCAATGTGT 38655 37 100.0 35 ..................................... ATGTGCCCAAACAGTTAGAGCGTAGTCATTGTTTG 38727 37 100.0 35 ..................................... TTCCACGGCTCCAATTAATTGGTCTTTGGTTAATT 38799 37 100.0 35 ..................................... GTAATCTTTTTGCCAGCGTTCTCTCCATTCTGGAA 38871 37 100.0 37 ..................................... AAGCTTTAAAATTTGCATTATCAACCACTCTTTCTAA 38945 37 100.0 31 ..................................... TTTTATCTTGTACGTTTGTAGGAGCAATTAC 39013 37 100.0 34 ..................................... TCCTAATAGTGATTCTAATGCTTGTAATTTTTCG 39084 37 100.0 36 ..................................... ACCATTCATTACGATGGTGTTAGCTCTACCTAATAC 39157 37 100.0 36 ..................................... GTTTTCATCAATACCGTTAAAAATGCCAGCAAAATA 39230 37 100.0 33 ..................................... TAAGAATAGAGTGGCACAGCATCCATAACCTAA 39300 37 100.0 35 ..................................... TATATTCATAACCTTCGAATTGCTGGATTGTTGTC 39372 37 81.1 0 .....................TT.........ACTTT | ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 98.7 35 GTCGGAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : ACGCGCTAAAATGATTGAGGCAGTGAAAGCACTCACACACCAAGATATTGTGAAATTCTATCGAGATGCGGTGATTGAGCAAAAAGGTTTAGTCTTTATTAGCCAAGCATTAGGGACAAAAACGAAATCGGAAGAAGCAGTGCAACCTGCCGAATTTGAGAGAGTTGAAAGCATTGAAGCATTGCAAAAAGGATTTGAAGTGAAGTTTTACGATGAAGTGAAATAGCTTTTAATAATTTGAATAAAGCAACGAAGTGAAATGCATTTCGTTGCTTTTTATTATGCGTTTAGATTAGATCAGTTATAGCACATGGAATCTATTTTCTTTTCTTACAAATTCTCGTAAAATAATGCTGTCTTTTAGATTGTATAGATGAATTCAGAATGGTTAATTTTGTTCAAAAATTAAACAAATCGATAGCTAACTCTGAAGGAGTGATAAAAAATTGCGAAGTGCCTTTGGCAAGCCTTGCGGCACAATGCTCTAGCACCCCAGTACA # Right flank : TTGAGTGAAATCGGTGGAATGTGGAATATTGAAAGGTTGGTTAATATAAAGAAAAAATGCGGCTAATGCCGCATTTTTTATGTTTGTGTTATTCCCCAAAAGAAGAAATATATTTTTGTTGAATAAATTTAGGTTTGAGCAGATCTTCAATTTCTGCCCAATCTAAAGCAAGGGTGGTTTGTGTATCTGGTTCAAGTTCGCCAGGATTATAGTGGAAATTAAACCCTTCATCGTTAAAGTCGAAGTTGGTATTTACTTTAAAATTCTCTTTGCGCATATCCACGTCTTTGCGTGCGCCATAATCAGTATATTTTTCCCAAAGTAGCGCGTTAAGTTTAGCTTGGCTATCGGCTTTGAACACATCATTGAATTCAATTTGCTTACGAGTATCAAGATCAAAATTTAAGAAATAGCTATGTCCTGCGCCATGAGCACCGCCGCCAAATTCGTAATCGTTAACAATAAAGGTGGCAAGTTTTCCTTTTTGTCTTAAGAAGTAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 133245-134009 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALJP01000009.1 Haemophilus sputorum HK 2154 ctg120006325159, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 133245 32 100.0 35 ................................ ATTAAAAAAGCGGCTTGCCTCCGCTTTAGTCTCAA 133312 32 100.0 35 ................................ ACTTTACACCAGTAGTTGCTGGCGCTGGCGCAAAA 133379 32 100.0 36 ................................ GATAGGGATGCAAAAAAGGCCACCAATACTCCGCAC 133447 32 100.0 34 ................................ TTTTAAATGGTAAACAAGGAGAATCCATATGGAA 133513 32 100.0 35 ................................ CGTCATATAGCGATCACGCGCGTAAGAAGTTACCC 133580 32 100.0 34 ................................ CGGAAACAATTAACGCTACTCTTGATCAAGATGC 133646 32 100.0 33 ................................ TTCAATAACAACAGTTGTGATACGTTTTTGTTG 133711 32 96.9 34 .............A.................. CGTATGAATGGGCTTTATCTGAATTAGTCAAAGC 133777 32 96.9 35 .............A.................. TGGTTAGGCTATTACCATAGCCGCGCCCCTTGCTT 133844 32 96.9 35 .............A.................. TTTATATCTTGCTCGCATCCAATCAATATGGGAAA 133911 32 96.9 35 .............A.................. TTTGAGTAATGTCGAGCGTGCAAAGTTTGTCTCGC 133978 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.0 35 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGACGATCCAAACGGGCGAGCACGATTGCGCCGCATCGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGTGATGTCACGCCCGACCAGTGGGTCATATTGAAAAACAAACTGTTGGAAACCTACGACCCCACATGTGACAGTCTGCGTTTTTATCATTTAGGCAGTAAATGGCGTAATAAAGTGGAACATCATGGCGCAAAACCGGCTGTTGATATATTTAAAGATATACTTGTCATTTAGTTCGCTAACCTATTGTTCTCATTAAAACCCTGATAGGATAGCGATCCTTATTTTCTTTAACAATTTGAATAAGTTAATAATTTGTGTAACAACTAAATGTTAGTTATACTTCCTGATACTCCTTATATTTTAAAGGATAGCGAAATACAGTAAATAACTTACTGATTTTTATCATCTTTTTATATAGGGA # Right flank : CTTGCCGATCAAGAGAAATTAAAAGCAATGTTTGATGCAGCCACCTTCGGGTGGCTATTTTTACTTAATTGATTAAGAAAGGAAAAACTATCTATATTTATTCCCCATACCCTTCACAAATTGCTTGCCAATCGGTTTCATTAAAATGAATACCTAAGCGGGTTTGCTCTTTGTGAAAAGAGCGAAGAAGGCGGTTGAGGTTGTCTTTTTTCCAAGCATCATTGGGGTGAATTTTACATTTGTCAAAATCAATCAGCCAACATTGACCTTTCTCATCAAGCAAGATGTTATGAATATTTAGATCAGTATGGCAAACTTGGCGATCATGCATTGCGCGAATGACCTTTCCAATTTGATGATATTGCGCAAGAGGAAGAGGAGCTTGTTGTAACAATTTGCTTAGATCTTGCGTGTTAGGAATCTTTTCAATCATAATTTCTGCACGATAATAGCAGTGATGTTTTTCAATTTGAAAAGCAATAGGCTGTGGAACAGGTAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : GCAGCCGCCTTCGAGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //