Array 1 69641-68941 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLP01000004.1 Gilliamella apicola strain ESL0177 Ga0133557_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69640 29 100.0 32 ............................. TGCCGAAAACACCCTTCACTGTAGCCATTTGT 69579 29 100.0 32 ............................. CACCGTAGATCGTCGCCATGCCCTCTGTAACC 69518 29 100.0 32 ............................. GCACATTGTCAGAATGTGGCGGATTAGCGTAT 69457 29 100.0 32 ............................. TTAACCCGCGGTCATTCGTAACAACGTTTGAT 69396 29 100.0 32 ............................. GAATTTAACAAAGTTAACAACCACCTGAATAG 69335 29 96.6 32 ............................A GGTGATGATATGGAGCAACGTATTAATAATGT 69274 29 100.0 32 ............................. CGCAAAAATGATATTTCGGAAATTACCGCAGC 69213 29 100.0 32 ............................. GTATTCATGATGGTTACAACGAACATGTTTCA 69152 29 100.0 32 ............................. CCAGATTTCCGAAAGTTAAACTCAATGACGCT 69091 29 100.0 32 ............................. ACTGTTGAATATTATTTACACTATCAAATGAT 69030 29 100.0 32 ............................. GGCAACATAGCGATATTGTGTCGCTCGCAACT 68969 29 89.7 0 ....................A......AT | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.9 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TAGGACAAAGTTCACAAGCTAAAAGTATTATATTGAATTTTAATAAATGCTATAGCCGTGAACAGTTCAATGGTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAGAGATAATATTGATCTTTATCTAGCATATCAACAAGATGGAAAAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATGTTACAATTAGTGCATCTAAATGGGCTAGAGTTAAAAAAGCCGTCCCACAACTTGACCAGCAGCCTCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTTCTTATTGAAAAAGAGTCTTCTTTTTATTCTAAGGAATTAGGCTTTTATCTAAATTAATTTAATTCAAAGTTAAATATTAATAATTTTAACTGGCAATAAGTTGAGTGAATTTTATACAGAAAAATCGGTAAAAAATTGCTCCCTTATATTTCAATTATAAAACAAATGGTTATAATTAGA # Right flank : AATAACAATTAGTTAAAATCGAATATTAATTAACTTTGATTAACCAAAGCCAAAATATTTTGGATTGCGGTTTTAGCTTGATGGCTATTTTTCCAGCATGATGATCCTGTCAATAAAGCGCCTTTATTTAATATTTCATCTAAGTTGGTATTACGTAATTTTTCAAAGGAATCAAATTCCATCTGTTGTAATCTTTCTACTATTTTATCGCCAACGTATTTCAGCTCTAAAAGTTGTTTTTTTTCTAATTCTGAAAAAGCCATAATTTTCCTCTCTCTTTTGCAAAACTTTTTATGATTTTATTGATTTAAATTTAGCTTTTTCCATTTCCTAATTTTAGTTCTAAAGGATTTAAATGGCGCAACAGAATTGATGTGTATAAAACGTGCAACAGGCCATGCTGAAGGGTAAGGTTTTGTCCAATTGCGGGCATCTTTAGTAAAAAGCGTATTATCATCTAATGATACTATCCAACTATTCCAAATCGCCAGTTTCTGTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 87588-89449 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLP01000004.1 Gilliamella apicola strain ESL0177 Ga0133557_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 87588 29 100.0 32 ............................. AAATTGATAATAATCATAATTTTACTACGAGG 87649 29 100.0 32 ............................. TTTTTCAAAATTGAAAACGCCTTTCCCGCTTT 87710 29 100.0 33 ............................. CTTAAAAAGTTTTTTGTTAGCCATTGTTTTCAC 87772 29 100.0 32 ............................. ACAAGGACAGTGTGATGAATGATGCTAAAGCA 87833 29 100.0 32 ............................. GTGTACATACTTAATGGCTTTTATGTGATCAC 87894 29 100.0 32 ............................. TAAGCCCGCACGCCAAATGCGCTTGAAATTAT 87955 29 100.0 32 ............................. TCTTATGGAGTTTTAATGCTACTGATACGTTA 88016 29 100.0 32 ............................. CGTAAATGATCCATTAGCTCATAAATTTACAT 88077 29 100.0 32 ............................. GGCAAAGCATCGCTGACAATTTAAAAGATGGT 88138 29 100.0 32 ............................. AATTCCAAACGATAGCGAATATCAAAAATTAA 88199 29 100.0 32 ............................. AATTATTAAATTTACTACATCCGCTTGCCCCA 88260 29 100.0 32 ............................. CTGTCCCTTCTTGACCCTATAGAAGTAATCGC 88321 29 100.0 32 ............................. ATCGTTGTTATAATTTGTAATATTGGCATCTG 88382 29 100.0 32 ............................. CAACAGATTAGAATAATTGGCACTATGGTTGA 88443 29 96.6 32 ............................C AAATTCTGTTTGATTATATAAATTACGGTTGT 88504 29 100.0 32 ............................. GAAATCTTAAATAATTTACTGTTTCTGTCATT 88565 29 100.0 32 ............................. TCACGTTCTTCATTATATTCACTTTGAATAGA 88626 29 100.0 32 ............................. ATATAGGTCGCAAAAATTACAAAACTAATTTA 88687 29 100.0 32 ............................. CAAACTGTAATAATTTAAAAGCACAAATAGCA 88748 29 100.0 32 ............................. CTAGTGCACCTATAAATGCTTTATTCATTGTT 88809 29 100.0 32 ............................. AGTGGAATACATTTAGAGACAAAAATAATTGT 88870 29 100.0 32 ............................. AATCCAATGATTTGGAAGTTTTAATGCCAAAT 88931 29 100.0 32 ............................. CTACAGAGATTTGATCCCCCCTTCCCTATTGA 88992 29 100.0 32 ............................. GCCGTGTATGGCTGACTAACAAACTTATCAAC 89053 29 100.0 32 ............................. GCGTGACCCAATTTTGTCATTTGCTATACTAG 89114 29 100.0 33 ............................. TAAATAACAGACTACACACAACCCTCAGCGCCC 89176 29 100.0 32 ............................. TCGCTTAAAACGCGTTAAATTGCGTTTTATGT 89237 29 100.0 32 ............................. TATGGGCGGGCTTCGATCCAAGTCGTACTCGT 89298 29 96.6 32 .A........................... GCACAGAAAAAAAGGTAAACTGGGCTATTCAA 89359 29 96.6 33 ...........A................. TGCGTGGTAGAGAGGCTTTAGATCTATTTGTTG 89421 29 69.0 0 .A.......A.A.C..T..AAC....G.. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.7 32 GCGTTCCCTGTGGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTATCTGCTGGTGGAATTGAACCGCCCCCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTAGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCGCCTAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTCCAAACTTATGGCGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTAGTATCTTTTTTACCTATTGAAAATCAATAGGTTAATGTTCTTTAAAAATTAGGAATAATTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAATTATCTATATTTAGA # Right flank : GGTCTACACGACTTAATGTGTTTTATATGATTTTGATTAAATGATTTATAAATTTAGGTGTATATCTAAATATTTTTTTCAATAATTATCCAACGGTAATAGCATGTTCTTTAAAAAGATGGGAGATTGGTAAATTTTATTTACTATAAGAAATATATGGATAATTTTTAGTTGAGCTAAAATAATTATTAAAAATGTTTTAGTGTGTATGCTGTGTTTTACACACTAAAACGATTAATATTTAACACTGGCAATTTCACCACTGATTTTATAAACACACTATAATCGTGGTGTGTTTATTGGTTTTTATAATAGTTGAGTGGAGTTATGCTAACACTCGTCTAATACGAGAAGTTACACCTTTTAAATTATAAGATTCAGCATAATCACGTATCGGTCTTTTTATGTAATCAATCACATATCGTTGACCATCAATATGATTATTCTTCAAATTAGCATACATTTTTTCAATTTCTGCTTTGACTTCATTATCATTGAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCTGTGGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 365334-365721 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLP01000004.1 Gilliamella apicola strain ESL0177 Ga0133557_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 365334 28 100.0 32 ............................ CAGTTCGTTTAGTTTTTGCACTAATGTTTTTC 365394 28 100.0 32 ............................ ACCAAAAATATAGAAGTCAAAGAGGATAATTA 365454 28 100.0 32 ............................ TGTTGCAAATGCGAATAAAAAAAGATTGCCCC 365514 28 100.0 32 ............................ ATTCTCCAGAAAATACCAGTAATACGGCGTCG 365574 28 100.0 32 ............................ ATATCGGAATTTTTGAACGTCAACGCGGAGTG 365634 28 100.0 32 ............................ ATAGGCTTAAGCGGCTCACCTGTTCTTATTTC 365694 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GCTTAACGCCGTGTAGGTGGTTTAGAAA # Left flank : ATTACCTTAGCCGGATTTAATCTCACCAAAGCCACTGCTCACACCAAGGTACTCAATTTTACCTCTAATTTAGCAGGCTTAATCTTCTTTATTGCTGGTGGTGAAGTTGTATGGTCAATCGGTCTTGTCATGCTAGTGGGGCAATTTATCGGTGCAAGATTAGGCGCCAAAATGGTTATCGCAAAAGGCCGAAAATTAATAAGACCAATGTTAATTACCGTCTCAACCATTATGAGCATCAAACTCATTTACGAAAACTTCTTCTAAAAGAATAAAAAAGTCTTAATTAACGAAAAACACGGTTTCTCAAAATTTTTTGAGAAACCGTGTTTTTGCTCTTCACAAAGTCTAGATTTTAAATAAATATTAACCCTTTTTTGCGGCTAAAATTAAATTATATAAAAATCAATAGGTTGAATGGGGGATCAAAAAAAGGGTTTTTTATAGCAAAATTGTCATTTACCTTTATTTGAACAATGATTATATTATATTGGTTTCTA # Right flank : ATTTCCAAAATTTCTTCATTGTGAAACCTCGTCGTTTAACGCCGTGTAGGCAGCAATATCATTTGTCCCTTCTTTTGGATAATTATAGTTATTTTGAAAAAGATCGTTTTTTGCACAAAACAATGTTATTTTATCACCATTATAAATTGAATTTATTTTCTAAATATCATGGATTTGATTCATTCGTCTGATCTTAAAACCATTTTACATTCCAAGCGTGCAAATATCTATTATTTGGAGCATTGTCGAGTTTTAGTCAATGGTGGTCGAGTTGAATATGTGACCGATCAAGGGCAGCAGTCATTATATTGGAATATTCCTATAGCTAATACTAGCTGTATTTTACTTGGTACAGGTACTTCATTAACTCAAGCTGCGGTGCGTGAACTTTCTCGAGCAGGAGTTATGATTGGCTTTTGTGGGGGAGGGGGAACGCCTCTATTTTCCTCGACAGAATCGGAATTTGCCTGCCAATTCTTTTCACCGCAAAGTGAATATCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTAACGCCGTGTAGGTGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 4 375032-375179 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLP01000004.1 Gilliamella apicola strain ESL0177 Ga0133557_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 375032 28 100.0 32 ............................ AGTGTTCCGATTAATTGTTCGAAGTTTTTGCT 375092 28 100.0 32 ............................ GAGCGAAAAATTTACGTCAATCAACCGATACC 375152 28 75.0 0 .................C...A.GTCGT | ========== ====== ====== ====== ============================ ================================ ================== 3 28 91.7 32 GTTAAATGCCGTGTAGGTAGTTTAGAAA # Left flank : GAACTGCCTTACTACAGCAAACTGTAATTAATGATTACACCTTAGCCCTGCCAATAGCATCTGTACCGACAAGTGTTAAAGGTTATTTACGGTTAATTCGTGTTAATCCTAAAGGACAAAGTGCTTTAAGACGAGCCGAAAAACGTTTAACCGCACAAGGTAAATGGTCAGCCGAGGTAAAAAGCAAAATGGTTGAAAAATGGGGTAGCGTTCATTTGAACTATCCACACCTTCATTTTGCTAGCAAAAGCACAGGGCAACATTTTATTATGTGGCTGAAACAACAAAAATATGCAACACCTGTGCAAGGTACATTTAATAGTTACGGACTCAGCAAAACTGCTACTGTTCCTGATTTTTAAATTGATTGACCCTTTTTTTAAGACGCTTTTTAACTTATTGATTATTAATAATATTAAAACCAGTCCAAAAAAAGGGTCAAAATCATAAAAGTTAGTAAAAATTCTTTTACAATAAAGAAAAAAAACAAAAAAGTTCTA # Right flank : TTTCTCAAGGAATTGAGAAACGATATTTTTTAATGCTAAACTCTCTTGCAAAACTACCAATGGTGATTTTAAAAATATAATCCCATTAATTGTAAATTGAAAATTTCTATTCTTTTAAACGAGGTAGCATTCCATTTTGGATGGTTTAACATATCCAGATTCTTTGATTTTTATCTAGATTACTATCAAAAATATGATCTTTTATCCTTATTGGTAGTATGATTTTTCACCAATAAACCGCTATTACTTTTACTTGAAAGTTTACATATCTTAACAACTTTTTTTATGCAACGTTTGCCAGAATTAACTAATTTCTCTATAATCAAACGGCAATTCGTTTTCAAATTCTTTAATATAAAACAAAAAGATACAAGACAAAAAGCTAAAAAAATGTTAAAATACAGTTGTTTAATGGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGC # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAATGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 903429-903576 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLP01000004.1 Gilliamella apicola strain ESL0177 Ga0133557_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 903429 28 100.0 32 ............................ AATCTAAACCAAGCTCGACCAGCTTTTCGGTA 903489 28 100.0 32 ............................ ATCGGATATGGTACGATTGCTAAGTATTGATA 903549 28 71.4 0 .................C.G..ACTTTT | ========== ====== ====== ====== ============================ ================================ ================== 3 28 90.5 32 GTTCACTGCCGTGTAGGTACTTTAGAAA # Left flank : TCCAATCTGATAATGCTGCTGACAAACTGGTACCTGAAGGGATTGAAGGCCGAATTGCTTATAAAGGCTTATTAAAAGAGATTATTCATCAACAAATGGGTGGCTTACGCTCATGTATGGGATTAACAGGTTGTAGCACTATCGATGAATTACGCACAAAATCGAAATTCTACCGTATTACTGGCGCAGGTATGAAAGAGAGCCATGTTCATGATGTTCTAATCACCAAAGAGCCACCTAACTATCGGGCAGGCTAATAACAACAAATAAAAAAAGGGATTGAAAACAATCCTTTTTTTTATTTTTGAAAAATATTCAATAAAATGTTAATTAGCGAAGTTTTGGAAAACTAACATTCCTTAATTGTTAACCCTTTTTTTTAACAAAAAATAAAACTATTAAAAATCAAAAGAATGTAAGGTTGCTCCAAAAAAGGGTTTTTGCAAATAAAAATGCGCTTTTACTTTTTGCCAACAATGTTTATAGTATGCTGTGTTCTA # Right flank : TCAAAAAAGTTGAGGAATGTTTTTCTAAGATTAAAATCCGTACTTTAAAAGTTTATATTAATAATAACATTTACAAAAGTTAACAATTTAAATTTTAAAAGCTGTTGCATAGATTTTTTCAATTACTATACTTATTAATTATTTTTTATTCAAAATCAGGTTGGCATTCAATCATTTTATCATAAAAATATTTTATAAATCATTAAGTTAATTGACATAATTGTCATTGTGTATTATAACATGGAACAATTTACCACCCGCCAAACCAATCATTTAAATTCGGCTAATTTGAGTAATAAACTAATCTTTTTGCTTTTATTTACCTTAGTTTTTTTAGCTATTAGCCAAAAAAGCCAAGCAATCACAGCACATACTGTAAATACCATTATTGGTAGTAAACCGAAAGTTGTCGATATAGAAGTAGCTGCAAAAAAACATGGCTTTAGCTTAAATGGTGTTTTTTATAGCTCAAACACACATAATTTAAGCGATACAGGTGT # Questionable array : NO Score: 4.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTACTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 449992-449719 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLP01000005.1 Gilliamella apicola strain ESL0177 Ga0133557_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 449991 29 96.6 32 ............T................ AATTAATGCGGATATGATGAAAAATGTGTTAT 449930 29 100.0 32 ............................. GTTTACAAGAGTACGTTTGCCTACCAATCTCA 449869 29 100.0 32 ............................. AATAAACACAGAAATTATTGAGATTGGTATGA 449808 29 100.0 32 ............................. CTAATGAGTACAGGGAAGACTTAGTAGCGCTG 449747 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCTGTGCATACAGGGATAAACCG # Left flank : TTATATTCTTGGGAGCAATACAGATGAGGATGAGGACAAATCTAATGTATTTTGGGTAATTCAAGATTTAGTTAACTATGCATTGCACTTAGTTGAGGATTCTGAAAGAGTTTAAATGACAACCCTTTTTTTACTGATTCTTATAATTCATTTAAAATCAAATAATTATAAATAGGTATAAAAAAAGGGTTTTAAAATCAAAATTGCCCTTTGCCTTTTGGCTAACAATGTTTATAGTATGTTTTGTTCTAGTTCACTGCCGTGTAGGTAGTTTAGAAACTCAGGGTTAACCGCTACAAATGTACCGCTTAGTTCACTGCCGTGTAGGTAGTTTAGAAAAACTAATTCAGTAGAAATTAGCGATGAATATCGTTCACTGCCGTGTAGGTAGTTTAGAAATATTAAACGTAATAATCAAATCTGGATCACATGTTTACTGCCGTGTAGGTAGTTTAGAAAAGTCAAGTATTTTAATTAATAAACAATAGGTTATAATAAGA # Right flank : TTATACACAGCAAATGGAAAAATGGTTGAAGTCGCTTAAAGATAAAACTGCAGCAGCTAAAATTAAAGTTCGAATTCGTCGCATGCAAGAAGGTAATTTTGGTGATGTTAAGCCTGTAGGCAGCGGTGTATCAGAAATGCGTATTCACTGTGGAAAAGGGTATAGGGTTTATTTTGTTAACCGCAATAATGAAATTGTTATTTTATTGTGTGGCGGTGACAAGGATACACAACAAACAGATATTAAAATTGCTAAAGAATTAGCAAATAAATGGGGTTAATTATGACTACAAAACTAAAAACTTTTGATGTGGTTGATTTTTTAAATACTGATGAAGAAATGCAAGAATATTTAAATGCCGCAATAGAAGAAGGAGACCCTAAATTTTTATTTATTGCACTTGGTGATATAGCTAGAGCTAAAAACATCAGTCAGCTTTCACGTGATACAGGTATAAGTCGTGAGGGTATTTATAAAGCGTTATCAGGTGAGGGGAACCC # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTGCATACAGGGATAAACCG # Alternate repeat : GTGTTCCCTGTGTATACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 450241-450033 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLP01000005.1 Gilliamella apicola strain ESL0177 Ga0133557_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 450240 28 100.0 32 ............................ CTCAGGGTTAACCGCTACAAATGTACCGCTTA 450180 28 100.0 32 ............................ AACTAATTCAGTAGAAATTAGCGATGAATATC 450120 28 100.0 32 ............................ TATTAAACGTAATAATCAAATCTGGATCACAT 450060 28 96.4 0 ...T........................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : TCGTATTAGATAAGTCACGTTCTTCTGATAAACAGGTTGAATCATTCAGATATAACGAAAAAGCAATAGATGTCATTAGAAATCATCTAATCAATAAAGAAATCGCTTAACCAATTACAACAAGCCCCTTTCTGGGGCTATTTGAGGATGTAGAAATGAACAGAACGAGGATAGCAGCATGAAATTTGTGATTGATAGTGACAACTACGAAATGATAGTTAAAAATTTGGGGCAAGCTAAGTCTCTGGCTTATATTCTTGGGAGCAATACAGATGAGGATGAGGACAAATCTAATGTATTTTGGGTAATTCAAGATTTAGTTAACTATGCATTGCACTTAGTTGAGGATTCTGAAAGAGTTTAAATGACAACCCTTTTTTTACTGATTCTTATAATTCATTTAAAATCAAATAATTATAAATAGGTATAAAAAAAGGGTTTTAAAATCAAAATTGCCCTTTGCCTTTTGGCTAACAATGTTTATAGTATGTTTTGTTCTA # Right flank : AGTCAAGTATTTTAATTAATAAACAATAGGTTATAATAAGAGTGTTCCCTGTGTATACAGGGATAAACCGAATTAATGCGGATATGATGAAAAATGTGTTATGTGTTCCCTGTGCATACAGGGATAAACCGGTTTACAAGAGTACGTTTGCCTACCAATCTCAGTGTTCCCTGTGCATACAGGGATAAACCGAATAAACACAGAAATTATTGAGATTGGTATGAGTGTTCCCTGTGCATACAGGGATAAACCGCTAATGAGTACAGGGAAGACTTAGTAGCGCTGGTGTTCCCTGTGTATACAGGGATAAACCGTTATACACAGCAAATGGAAAAATGGTTGAAGTCGCTTAAAGATAAAACTGCAGCAGCTAAAATTAAAGTTCGAATTCGTCGCATGCAAGAAGGTAATTTTGGTGATGTTAAGCCTGTAGGCAGCGGTGTATCAGAAATGCGTATTCACTGTGGAAAAGGGTATAGGGTTTATTTTGTTAACCGCAA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 916288-915780 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLP01000005.1 Gilliamella apicola strain ESL0177 Ga0133557_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 916287 28 100.0 32 ............................ AGCGTCACGAGTTATCACACGTAGATTCGGTA 916227 28 100.0 32 ............................ TCCCCAGTTTGAGGAGAAACAAAAGGATCAAC 916167 28 100.0 32 ............................ TTGCTGACGCACCGATTCAACAGAAACAACTG 916107 28 100.0 32 ............................ TGTCCGAGCGAGCAGTGATTAACTCGCTTTAG 916047 28 100.0 32 ............................ TCTGGATTCAAGATTTCGATTTAACTGTGTTA 915987 28 100.0 32 ............................ TCAGCATGCGCCAATCGGACAAATTCATTGTC 915927 28 100.0 32 ............................ TTTTGTATGAGCGCTAGTTGATACGCCTCCTA 915867 28 100.0 32 ............................ ACTGCCGTTGGCATGCCGAATTTTTCCAGAAA 915807 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.6 32 GATTTATGCCGTGTAGGCAGTTTAGAAA # Left flank : CATTTTTCAATCGCCCATTGATTTAAAACTTAAAATATTTTAATCGACCAACCGATTTTATTAATCGAATTATAACTAGTCTAACAATTAACTATCCAATATTCAAAAGGCTTTTAGAATAAAAAGCAAAAACTAGAAAATTAATTAGAAAAAGGGTAGAAAGTAATAAGCGTTTATTACTAGAAGTAGCGTAAATAAATTCGGTATAAATTTTTAATTGATAAAATGCGATGATTATTGGTTGTCCTGATTGAAAAGCCGCAAAAAATAAATCGATATCTACTTTTACAGAAGTATACACTAGCCAATAAACACCTTGTGTAAAAAAGTTGAGGATCTTAATTTTGAAACCGAAAATACCCTATGGCTAACCCTTTTTTTTGAACAAAAATAAAAACATTAAAAATCAACATATTAGAAAATGATTTAAAAAAGGGTTTTTATGACTAAAATTACTCTTTGTCTTTTTGCAAACAAGATTTATAGTATGACTGGTTCTA # Right flank : GATACCGTTCCAAACGCTAATTCCTAAATCATCTTCTCTGCTGAAGGAAGCTAGCTATTCACAATCAAAATCCTGATAAACCGCTCTAGGGCGGTTTTTTATTGCTCAAATATTTTAAATAACCTACCATTACTTAAAAAGGAGAGGGTATGAAAAGAATAGCGTTGTTGTGTTTAGTTTGCTTAGCATTGTCTGGCTGTGATGATGATAGTGGTGGTAAAGTTACTAATGAGTTTTTGGTTGGAAAGTGGGATTGTAAATTAAAAAAATTCTTTGCTAAAAATGAGAATGGAAAACTTTCTGATTATGCAAAAGATGGTGAAATTATTTTTGTAAAGGAATATAAATTAGACCAAGGTAAACTATACTCAAAAAAAGATAATTCTAAAGATTGGGTATACATAGATCTAGATAATAGATATACGGGTAAAACTGATGTTATTCGTGACGATGGATTTCGCTCATTAAAAGTTACAACATTAATGACTAAAAAAAGTGAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTATGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //