Array 1 18674-19962 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQBA01000001.1 Yersinia pseudotuberculosis strain IP33177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18674 28 100.0 32 ............................ TGCTTGAGCCGTCAGAGGGTGAGAAGCTAGAT 18734 28 100.0 32 ............................ CAGGCTCCAACGGTCGCAATGCCGATCAACTC 18794 28 100.0 32 ............................ CTGATTAGCAATGGACATAAAAGTCACTGACG 18854 28 100.0 32 ............................ CTAAAACTCCAGCTGATGCTGAGAAGCAAAAT 18914 28 100.0 32 ............................ TGAGGCGCTAAATTCTGATTCAGTCACTTGGA 18974 28 100.0 32 ............................ AGATAGCCAGGCTGGTGCTGTTCGTCATAAAG 19034 28 100.0 33 ............................ ATGACCCCTCATCAATTCAGAATGGCGGCTAAC 19095 28 100.0 32 ............................ GCTACACCACATTCGGCTGGGTACTGCCTCGT 19155 28 100.0 32 ............................ AGTCTGAAAACACACTTTCGAAAGCTCGCAAA 19215 28 100.0 32 ............................ AATAACTTCCCCAGGGCGATAGTGGCCCCGAT 19275 28 100.0 32 ............................ AGTCTGAAAACACACTTTCGAAAGCTCGCAGT 19335 28 100.0 32 ............................ TACTCGGCGGGGAACTTTGTCATTAGTCTCAA 19395 28 100.0 32 ............................ AGCTCTAGGCGCTCGGTAGCCAACATCACTAG 19455 28 100.0 32 ............................ CGGCGTAATGGGACTGACAAGGTTTGAATTTA 19515 28 100.0 32 ............................ TGGCCCCGAGTGATAATCCTCGTTTGAGATAT 19575 28 100.0 32 ............................ AGGAAAGCAAAAACCGTCTGGTCATGAAGATG 19635 28 100.0 32 ............................ GGAAAGTAAAAACCGGCTTGTGATGAAGATGA 19695 28 100.0 32 ............................ CTGAATTTTCGCGGCACCGGAAAACCCTATCT 19755 28 100.0 32 ............................ AAGCGCGTCAGCAATTTCGCCAGGGTCGATAG 19815 28 100.0 32 ............................ GCAATCCGATGAATTCAATCTACCTGCTATCT 19875 28 100.0 32 ............................ GCTGTAATCCCGCTCATCGCCAATCACTGACA 19935 27 85.7 0 ...................-A.A.C... | T [19959] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTTTAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATGGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTAGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 106322-105935 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQBA01000004.1 Yersinia pseudotuberculosis strain IP33177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 106321 28 100.0 32 ............................ ACTCACGCCCGGTGCGCGTTCCCTGCTTTCCA 106261 28 100.0 32 ............................ AAATGATGTTACGTAATAAATCCATACTGCTA 106201 28 100.0 32 ............................ ATCTTCTACCTCGGCTTTTAATTCCTGGACTT 106141 28 100.0 32 ............................ ATAACCCAGATCGAATGAACCGCCCACACCGA 106081 28 100.0 32 ............................ ATACCGCTTACTAGTGCTTGTAGCTTCTCTAA 106021 28 100.0 32 ............................ TTACACGCTGGACGGCCAGGGAGACGAGAGCT 105961 27 85.7 0 .....................CC.-.T. | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAAACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCCCCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACG # Right flank : ATCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGATCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //