Array 1 2257883-2255232 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ089417.1 Klebsiella pneumoniae strain MGH94 aeusg-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2257882 28 100.0 33 ............................ CTCCTTAGCGAGCTGAGAAACTTCAGGTGTAGC 2257821 28 100.0 33 ............................ TATCATGGGGCACAGCAACTTCGCGAACGCATT 2257760 28 100.0 33 ............................ TGAGGAGTTTGTGAAAGGGACTGAGACTGATAA 2257699 28 100.0 33 ............................ CATAACGGCTCCCCATTACGCCAGCCACAATGG 2257638 28 100.0 33 ............................ TAACGATAAATTCTTTTACCATCAGGTGTTTTC 2257577 28 100.0 33 ............................ CCCAAAATCCTTGCAAGTGTCGCCCCCAACAGA 2257516 28 100.0 33 ............................ TGCGTATGCTGAGGGCATCCACGGTAATGTAAT 2257455 28 100.0 33 ............................ TACGGCTAATGCTGCGGCGATTAGGCGGCGGAT 2257394 28 100.0 33 ............................ TCCGAGATTGACCGTCTTTCTGAGCGTAAGCGT 2257333 28 100.0 33 ............................ TTCTGCCTGTTTTGGTGACATTAACAGGGTCAT 2257272 28 100.0 33 ............................ TCGACGATCGGGGCTGCTGTAGCTGGTATTAAA 2257211 28 100.0 33 ............................ TATGGGAGTCTGCATTGATGATGACGTTTTGTT 2257150 28 100.0 33 ............................ TCAGGCTGTCATGCACCCCCATTGAGGTAAGCA 2257089 28 100.0 33 ............................ TTCCTACCGATGCAGCGCTTGCCGCGGATGCTG 2257028 28 100.0 33 ............................ TGTATTCAAAAAGCGATTCCTGAATCAGGTCTG 2256967 28 100.0 33 ............................ CATATATGACAGATGCCCCGCAGCTTGGCACTA 2256906 28 100.0 33 ............................ TTCTTCCATCCTGGTCTACCACTTGCAGGCGCC 2256845 28 100.0 33 ............................ TTTGAAATATAGATTTCACAGCAATCATGGGGT 2256784 28 100.0 33 ............................ CTGTTTTTGCATTTGTCACGGGGATGGTTCCGT 2256723 28 100.0 33 ............................ CTCAGTGCAGCATCTTGCATCGCGCGCAAGGAA 2256662 28 100.0 33 ............................ TGATGCATATAGTGATTTTTGTCATCGCAGAAA 2256601 28 100.0 33 ............................ TATCGTTTTGCTTTAACGATATCGACAATTCAT 2256540 28 100.0 33 ............................ CAAATCCGTATTCGACGCAGGCCAGATGGCCCT 2256479 28 100.0 33 ............................ CATTGGGGATGTCTGCGATTTTAATGCAGCGAA 2256418 28 100.0 33 ............................ TCATTAAATCTATCGAGCAGCGCATTGATCTGG 2256357 28 100.0 33 ............................ CAGATAACAGAATAGAGAATTTAAGGGTGGTTG 2256296 28 100.0 33 ............................ TTGCGAGGTGATCCCATTCCATATTCCTGGCAA 2256235 28 100.0 33 ............................ TATGCACCACGAAACGGACGCGAGAAGGTAAAG 2256174 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 2256113 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 2256052 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 2255991 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 2255930 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 2255869 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 2255808 28 100.0 33 ............................ TTACGCGATTGCCATTCACTTAAAGCGATCTGA 2255747 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 2255686 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 2255625 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 2255564 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 2255503 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 2255442 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 2255381 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 2255320 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 2255259 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 44 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2267336-2266636 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ089417.1 Klebsiella pneumoniae strain MGH94 aeusg-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2267335 28 96.4 33 .............A.............. TAAATCCCATACCCTCCAGCTCAATCAGATAGC 2267274 28 96.4 33 .............A.............. TAAGATAGATAACCTCAGGCTTGTCACTCCAAA 2267213 28 96.4 33 .............A.............. TGCACCTGTCACTTGGTGATGTACCTGATGCCA 2267152 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 2267091 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 2267030 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 2266969 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 2266908 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 2266847 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 2266786 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [2266781] 2266724 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 2266663 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.3 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //