Array 1 2308500-2306484 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026097.1 Lacticaseibacillus paracasei strain HDS-01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2308499 36 100.0 30 .................................... ACTTAAAGCTTTGTTTTCTTCTCGTCATGC 2308433 36 100.0 30 .................................... TGGTTAAACGCTACATGTTGGATGTTTTAC 2308367 36 100.0 30 .................................... TAGAACGAGATTGAAGAATAGGACAAGCCG 2308301 36 100.0 30 .................................... TACTAAGAACAGTAGGAAACTCAGGTGGAG 2308235 36 100.0 30 .................................... AACTGTTGTTTTGGATATTAAGCAAAGTCT 2308169 36 100.0 30 .................................... TCACACGCTGACAGCAGTTGTGGATTACAT 2308103 36 100.0 30 .................................... GGCGATTACATGCTGGAAACGCGTGTCAAG 2308037 36 100.0 30 .................................... CGCTGCGCCACGCTGTCAAACGTGACCGCT 2307971 36 100.0 30 .................................... TTGATCGGCTGCCACTGCGCGGGGTCATTG 2307905 36 100.0 30 .................................... ACTATTGTTGGCAAGTTGGTTGATGCCTTG 2307839 36 100.0 30 .................................... TGTACGGTACAACTGCCCGTGGGGTACGCC 2307773 36 100.0 30 .................................... TGACCGGACGAATGCTGCGCAAGATGGTGC 2307707 36 100.0 30 .................................... AGAATCGATGATCGAGTATGCTCTAATGTC 2307641 36 100.0 30 .................................... GAAGCTGGTCGTTCGGGTGATGACGATGCG 2307575 36 100.0 30 .................................... TAGAAAACGCCTCTGCGCCCGTGTCAGCAT 2307509 36 100.0 30 .................................... AGCAGTAGACCCAACAAATGTGCTATCCGC 2307443 36 100.0 30 .................................... GGTTGCTTGCGCATCTTGGTGACACCGATT 2307377 36 100.0 30 .................................... TAATTCATTTATGAGATTTTAACGGAGGTA 2307311 36 100.0 30 .................................... GTTGCGCTGGCCTAAACTGCCGATCACACT 2307245 36 100.0 30 .................................... TGGATCTCTCAAGGCAATCCAAACGACACG 2307179 36 100.0 30 .................................... CCGCTTAATGTGCCAAATTGGCTGGCACCC 2307113 36 100.0 30 .................................... CGCAGCATAGTCATAAACCGCACCGCCAAC 2307047 36 100.0 30 .................................... GGCACAAGCTTCTACATCAGTCATGCCTGC 2306981 36 100.0 30 .................................... CAAAGGTACACAGCTTGATCATGCGGACAC 2306915 36 100.0 30 .................................... GACGAATACGGCAAGGTATGCCAGGCCATA 2306849 36 100.0 30 .................................... TTTCAATGGAAGTAGTATCAGTTTCTGTTT 2306783 36 100.0 30 .................................... TGTGACAACAAAATACACTTTGGAACGTGG 2306717 36 100.0 30 .................................... AAGCCGCACACAAAGGACGCCACCGAACAA 2306651 36 97.2 30 ...........................C........ TTAGCTTCATATCATTTACATGTTGGTATC 2306585 36 100.0 30 .................................... CAAGAACAACAACAACAGCTTGATGTGACA 2306519 36 86.1 0 .......................C.....A..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.5 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATTGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTCGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : AAACAGCAGTGATATTAATATTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAAACAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGTAGTACGACCAGTCAGACGAGCAACGCGAAGGTCAAGATTAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //