Array 1 41609-42866 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPO010000004.1 Intestinimonas sp. MSJ-38 L-58_ctg0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 41609 32 100.0 40 ................................ CGGTTCTTTCTTTTCTGTTTTTTCAAAAACAGACCATTCC 41681 32 100.0 36 ................................ CTGTCCAGGTTACTCTTCTCCCCAGCTTCTGCCCCA 41749 32 100.0 36 ................................ TTGCAAAAGGCTCTGCTGCCGTGCGGTTTGCCCCGT 41817 32 100.0 36 ................................ AAACACATTGTTCATCTTTTTCCCGGTGATGTCCCC 41885 32 100.0 38 ................................ CACCTGCCGCTTATCAAAATTGGTGAGAAGGTTTTTGG 41955 32 100.0 36 ................................ TGGCCGTTTATCATGTATCCGATCTGCCGGTTGCCG 42023 32 100.0 35 ................................ TTGTTCACCTCGTAAAGGCTGTTGGAGATCTTCGT 42090 32 100.0 35 ................................ TTGCCCCCTTCCGAAGGCTGGTCCACAAAGGCCCC 42157 32 100.0 41 ................................ AGGCCGTTTCCCTCGGTGATCTCCGTGCCGTTGACTTCCGC 42230 32 100.0 38 ................................ TGGAACGGGCAGGGCGATATTCTGGGAAGCGCCATCGG 42300 32 100.0 34 ................................ TTGTGTGATTGGGTTCAACTGGGTGTCCAGGCCA 42366 32 100.0 38 ................................ CCAGCTGCCCACAAGGTGGGCGGTGGTGGTGTCGTAGA 42436 32 100.0 33 ................................ TTATGCAGCTGGGCGTTCAGGCCGTAGTGATCG 42501 32 100.0 36 ................................ ATGTGTACAGTGGCGAGTATGAAACAGGAATTGCGA 42569 32 100.0 33 ................................ ACTTCCTGCATCAAATCAGCCCCAGTTTCCTCG 42634 32 96.9 35 ......T......................... TGGTCGGCGCACAGCTTGTCCAGGATCTTCTGAGT 42701 32 100.0 36 ................................ AATATTGCGGGAAACCTGGCTTCGCCTCTGGCACTG 42769 32 90.6 34 ..........T.A.........A......... ACAACCACCCTTTACCGGCTGGAACCCGTCACTG 42835 32 90.6 0 A..........T.T.................. | ========== ====== ====== ====== ================================ ========================================= ================== 19 32 98.8 36 GTCGCCCCTCACGCAGGGGCGTGAATTGAAAT # Left flank : CTGGATCGGTATCCGCCGTTTATTTGGAGGTAGCACATGCTGTTGGTCATTACATATGATGTGGATACCACCGATGCACAGGGGGCAAAACGCCTACGGAAGGTGGCCAAACTGTGTGAACACAACGGTATGCGGGTACAGAATTCCGTATTCGAGGTATTGGTGGATGCTGCACAATGGGTAGTTCTGAAAGAGGAACTTTCCAAAGTGATTGATCATGAGCGCGATTCTATTCGCTTTTATCGCTTGGGGAATTCCTATCAGCATAAGATTGAAACCATGGGGCGTACCCCTTTGGTGCAAGCAGGCGAAGCTCTGCTGTTGTGATAGTGCGCCTATCGTGCCAACACAGAAAAATTGGGGAGGTAGGCGCAGAAAAACAGGAAAATATAGCTGAAAAATGGAGGTTTTCTCATTAGTCCGAGCTATATTTTAAAAAACTCATTTAAATTTTGTTATAATTGCAGCAAAATAGCTACATGTATTTGTCTAATTTTGCT # Right flank : TAACGCGATGGCTCAGCTCTACATGAGTGTGATTTTTCATCCCTTACATAAGGGGCGAAGTGAAAAAGCCACCTGGCCAATGTTTAAATTGACCAGGCGGCTTTATGTTATCATCCAAATTAGAAATTCTTTTTTGTTACTTCTGCATGTACGGTAGATTTGGAAATGCCGAACCGCTGAGCGGCCTGGCGTACGGTGGCATTGTTATGCACGATATATCGGGCTAGCTCGGCACACCGTTCCTCGGGTAGACCTTTCACCCTCTTTGCCCTCCCTCTCTTTTCGTCTTTACCTCATTCTATGCAGGCAGGATGGGGTTTCATTCTTTTCTTTGAAAGAGAGCACAGGGATGGTCTTTGACTTTTTCCGGGTGTATACTAAGTCTTAGGAGGGGTTTGGATGAAGATCGTTTTATTGCTCTTTTCTCAGTTTGAAACTTTGGATGCCTTTGGCCCGGCAGGGAGCAAGGGCGCAATACTGTTTGTCGGTGTGCACCGGTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCACGCAGGGGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : NA // Array 1 104927-104081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPO010000007.1 Intestinimonas sp. MSJ-38 L-58_ctg0007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 104926 33 100.0 36 ................................. AAAGGGCATCGTGATGGGAAGATGTCCGATGATCAC 104857 33 100.0 36 ................................. CCGCATGGCCTGGTCCAGGTCGATCTCCTGCCCTGC 104788 33 100.0 36 ................................. ACTTTGGTATGCAGCCCCGCCTCATCCTGGGGCAGG 104719 33 100.0 34 ................................. ATTTTGCGCTGGATGTGTGCGCGACAGCGGAAAA 104652 33 100.0 36 ................................. AAATTGGCCGAAGGCGCAGGACAAAATATAGATCAG 104583 33 100.0 33 ................................. CCATGTTTTTTTTACTCAGCTGAGAGCTTCCAA 104517 33 100.0 34 ................................. CCACACACCTCTGCAAGGGGGTGGCATGATGGGG 104450 33 100.0 33 ................................. ACGACAACGCCCAGACGGCCCAGTGGATCATCG 104384 33 100.0 34 ................................. CGGAGGGAAGAGCCAGGATTACACCGGGCTGTTT 104317 33 100.0 34 ................................. CCAGTAGTCTATTCATATTGACGAGCGCAGCCAA 104250 33 100.0 35 ................................. AATAAAATGCGCATGGAATCCGGCATGAGCCTGGA 104182 33 100.0 36 ................................. AGATTAGCCATGATCGTCGCCTTGCCGGCGTCGACG 104113 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 13 33 100.0 35 GTCGCTCCCCCCACGGGGAGCGTGGATTGAAAT # Left flank : GGCGATTTGGAGGCATATCCGCCATTTTTATGGAAGTGAGGATGTTATGCTGGTATTGATCACATATGATGTCAACACAGAAGATGCCGCAGGGCGCAGACGATTGCGGCAGATCGCCAGGCAATGTGTCAACTATGGCCAGCGGGTCCAGTGCTCAGTGTTTGAGTGTCTGCTGGACACAGCCCAGTGTAAACTGCTTCAGGCTAAACTTTTATCCATTATGGACCCGGAGAAGGATAGTTTGCGTTTTTATTACCTGGGGAAACGATATGAAAACAAGGCAGAGCATTTCGGATGCAAACCTTCCTATCAGCCGGAAGAACCATTGATTTTATAATGGTGCGAAGAGGAAGCGATCACGCATGGCCTGGGAGGTTCGCACCAGAATGAGACCCTTTGCCGGGGAATGATAAAGATTCCACTTGAAATCTTACTCTTGGATAAGCTAAAATTTATTTAAGTTCTATCAATTTGCAGAGGTGCTGTTGTGCAAATCTGCT # Right flank : GGGTAGGTTGAATAAAGAATCACTGCAATAGGAATGAGCCTATTTACCCCAATTGCCCTTCTCCAAAACGGAGAAGGGCAATTTTCTGAGCATTTTCCGCAACAGGATGAGGAAGAAGGTAGGTATTACAGCATTTCTCGTTCATGCTTATGCCTTACGACCTTCGATCTGCCTGTTCCATTCCTTTGCTGTTGTGCCTCATCCAGGTTCATTTCTTTGAAGATGGCGGTTTTTCCATCCAGCCCATCCAAATCAGACTGTCAGGCCCTTGCATCATCTGCTGCAATCGCATCCTGACAAAGAAAATAGTTAAACAACTAGAAATTATTGATAAAAATTTTGTCGAGATATATAATGAAAAAAACTTCATGATTTTTGGTATCAATATGCAGTTGTGGAAAGGGGAGCTTATGAATATTCAAGAAATTCAGCACCAACTTCATCTGTTTCATCAAAAGGCAAGTGTTGTAAAAGAACAGCTGACAGATTTGTTGGTAACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCACGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.30,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //