Array 1 30273-29847 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048795.1 Hydrogenobacter sp. T-8 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 30272 29 100.0 36 ............................. AAGGAAGTTGGAGCTAAAAGAAGAGCTTGCCAAGGA 30207 29 100.0 38 ............................. CTGGAAGCACAAGCATACATTAAACCCAATGATATAGT 30140 29 100.0 36 ............................. CTGGCACGCCTAAGCAAGGAGCTAATAAACGCCAAA 30075 29 100.0 37 ............................. TTTTTTGCTGGGCATATAAACATTACAGCAATGCGAA 30009 29 100.0 38 ............................. TTCTGGCAGAGCAACATCCTTGTTTACTTCTCTCTTCT 29942 29 100.0 38 ............................. ATAGTAAGATTTGTTGACTTGCCATAAAAAAGGGTTAT 29875 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 100.0 37 GTTTTAAGCCCACCGTGAGGGATGGAGAC # Left flank : TTTACACCAAAGTTTGTTATAATCTTCAAAAGGTAGGTTAGGAAGCCTTTGCTCCCTTGACATCTTGGCAGTTGAATAGGGTTTTTGGTCTCTTGAAGTTAAGGGGGTAGTATTGACTAAAAGGCTTTGACAGCTCTCTGTTTGTTAACTTCCACTATGGCGGTCTTTCCCTTTAGTCTCTCTGTCCTGTGGGTTTTCTCAAAGGTGGTAGGGTAGAGATATGGTGCTTTTCTTGGATTTTTGCCTTTTCTGAGCTTTGTCTTTCGTAGCTTATATTTTAATGCCCTTATGCTTTTATGTTTTGGCATAAAGATGCAATAATGCTTTGATGTTTTGATGACAGATGCCTCAAAGCCTTGTCTCTCAAGGGTTTAAATTTGACAATACCACACTCAACCTTGCAGGACCTGACACTTCTGGCAAACCACCTTCACTTGAGAGGGGTGCTACCCTAAGAAAGTGCTTGATATTTCTTGCTTTTCTTTTTGTGTAGGTTTGAG # Right flank : TCAGTTTCAATTGGATAGAATAGTCCGAGTTGCAAGTTATAAAGAGCTTTAAGCGAGGTATAGACAAGGTTTCTATAACTTAGATAGGTCTAAAGGATGCCGGCTTCTTTTAGGGCTTCTTTTACTTCTGGGTTTTTTCTGCGAGTTTTTTGAGAGCCTTTTCAATCTTTTCTTCTCTCTCCTCAAGCTCCTTTGTCTTCCTAATAGCTGGAGCAAGTGCACTTCTCCTATCCCATATCACAAAGCCTATAAGGCTCATCATACCAGCAAACAAAACACCAAAACCCCAGAGCATAATACTTATCATGTCATCTATCCTCTTGTTCGTGTCATCTATCCTTTTATTTATATCATCTATCCTTTTGTTTGTATCATCTATCCTTTGCATTAGAGCTTTAAAACCCTCTTTCTGGTTTTCCTCAAGCCTTATAATCCTATCCCTATCTTCAAGAGTGAAGGAAATTTCCTTGGCTAAGGGATAAGAAAGCAAGAAACTCAGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAGCCCACCGTGAGGGATGGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 74894-75519 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048795.1 Hydrogenobacter sp. T-8 chromosome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 74894 29 100.0 37 ............................. TTGAGAATAATGAGAAAATAATTGAAGAAGAACCACA 74960 29 100.0 37 ............................. AATATGCCATTAGAAGTGATAGAAAACTTTTTGAGAA 75026 29 100.0 36 ............................. ACAAGCAAGGCAAGACCAAGAGTTTTGCCCTTACTG 75091 29 100.0 38 ............................. CGCGGTGGTGAGAGTGGTTTATCATATAGCGTTTCATA 75158 29 100.0 42 ............................. AAGACCTTTAAAGTGTCCACTGCTAAGGATGTTTTGGAGAAG 75229 29 100.0 36 ............................. TTCTTGAAGGTTTAAGCATTATCTTTCTACGTCAGG 75294 29 100.0 37 ............................. CCCTTACTTACTTTTATGATTAGCATCATATCCTGAC 75360 29 100.0 37 ............................. AATATGCCATTAGAAGTGATAGAAAACTTTTTGAGAA 75426 29 100.0 36 ............................. ACAAGCAAGGCAAGACCAAGAGTTTTGCCCTTACTG 75491 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 10 29 100.0 37 GTTTCAACTCCACACGGTGGATTAGCAAC # Left flank : ATACCCTTACTGATGGCATACACCTTTTGGCAAACCTACTTGAACCCTTTATGCCAAACAAAATGCAAGAAGCCTTGAACTTAATGAGCTGTGAGCCAACACAGGGTTTGCTAATGCCTTATATGAGGTCTGAGTATTTTGTAAAGGATAAGGCTGTTCTGTTTCCAAAGAGGGGATAGCCGCTACTTAGTCCTATGTTATCTAAGGAAGATATCTGAGGTTTCTCTTGAGCATTGCTCTTATCCTTTTCCTCATTTCTCTTCTTCTGGAGCGTTCTTCAAGTTTTCTTTCAAGCCTTGGAGCTACTAACCTGTATGCCACATAAAGCAATATAACCACAGGAGCAAGCATAAAGCCCAAAGCCAAACCTATTATCGCTAATATGGGTGCATAGTAAAAGAGTGCAATCAAGATAACTAAGGAAATAATTCCAGACATGGTGCTTTAAACTCCATAGGATGATTGGCACTAACTATATATCTGGCTCTAATATCTGTCAA # Right flank : CCTCAACTCACCACATAAAGAATAATAAGACATATTTTGTCAAGGGGGCACCCCTCTCAAGTGAAGGTGGTTTGCCAAAAGTGGCAGGTCCTGCAAGGTTGAGTATGGTATTGTCAAATTTAAACCCTTGAGAGACAAGGCTTTGAGGCTTATGTCATCAAAACATCAAAGCATCACTGCATCTTTATGCCAAAACATAAAAGCATAAGGGCATTAAAATATAACCTATGAGAGGCAAGCAGAAGAAAAGGCAAAAGTTTAAGAGAACCACTATATCTCTACCCTATGACCTTTGGGAGAGCCTGCGTATAGAAAGCATAAGGAAAAACACCTCAATGGGAGAGCTAATAGCCAAAAAGTTAAAGGAGTTGGAGGAGCTAAGGCAAAAGACCGTCATAATGCAAGTGGACGAGGAGGGACTTCTCAAACCTCTTGAATGAATACTACCCCCTTAACTTCAAGAAGCAAAAACCCTATTCAACTGCCAAGATGTCATGGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTCCACACGGTGGATTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 311881-312374 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048795.1 Hydrogenobacter sp. T-8 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 311881 29 100.0 37 ............................. TGGGCATTTGGGCAAGAGAATTATGGAAAAACCTTTG 311947 29 100.0 37 ............................. TAACAGAAACATACCTGCTTATGGCGTTTTTTAGTCC 312013 29 100.0 38 ............................. CTTGTTCTGGCGGATATTCTTTTGATGTTTTCACCCCC 312080 29 100.0 40 ............................. CTCTGCTCCGGTAGAGATACCTGAGCTTGAGGTGAGCAAG 312149 29 100.0 36 ............................. CTTTCTTAACCTTAAGCTCCCAGTCCTCTGGGGGCT 312214 29 100.0 38 ............................. CTTGCTTTTTAAGCATTTAGAAGTATTAGCTTAATCTC 312281 29 96.6 36 ............................C TAAAGCTTCTATCCTTTCCCAGACTTTACCATATCC 312346 29 93.1 0 ........................T...A | ========== ====== ====== ====== ============================= ======================================== ================== 8 29 98.7 38 GTTGCTAATCCACCGTGTGGAGTTGAAAT # Left flank : GACATCTTGGCAACTGAATAGGGCTTTTGCTTCTTGAAGTTAAGGGGGTAGTATTCATTCAAGAGGTTTGAAAAGTCCCTCCTCGTCCACTTGCATTATGGCGGTCTTTTCTTTGAGTTTTTCCAGCCCCTCTAACTTTTTGGCTATTAGCTCTCCCATTGAGGTGTTCCTTTTTATGCTCTCTATACGCAGGTTTTCCCAGAGGTCATAAGGTAGAGATATAGTGGTTCTCTTAAACTTTTGCCTTTTCTTTTGCTTACCTCTCATAGGTTATATTTTAATGCCTTTATGCTTTTATGTTTTGGCATAAAGATGCAATGATGCTTTGATGTTTTGATGATAGGTGCTTAAAAACCTTGTTTCTCAATGGTTTAAATTTGACAATACCGCACTCAACCTTGCAGAACCTGCCACTTTTGGCAAACCACCTTCACTTGAGAGGGGTATCCCCTTGACAAAAGGCTTGATATGTCTTATTATTCTTTATGTGGCAAGTTGAG # Right flank : ATGACATCTTTTTATGCTGGATGTTTAAGTGTTATAATTTACACGATGGAGCAAGAAGTATTTTTGAAGAAGTTTTCTTGGGATGGAGAAGAGGGAAGAGAGGAGCTTTTGATAAGGGCTATGCTATATGCAAATCCTCTTGAAATAGCACCGCTTTTTAGGAAAGAAGAGCTAAGAAGAGTGTTTTTGAATAACCTGCATAGGTTTCGTGGGAAAGACAGGAGCTTTTGGAAGGTGGTTTTAGATGTCTCAGAAGAAGAGCTTAAAAGATATTCAGAAAAAAACTTTAGAGAAAATAGTATCTTTATCCCTTACTGAAGGCTTTTATTTGGCGGGCGGAACTGCGTTGACTATTAGGTATGCTCATAGGCTTTCTGAGGATTTTGACTTTTTCACTTTCCCCTCTCACAACTTTAACGCCAATGTGCTCTTAGAAAAACTCAGGAACACAACAGCAGAAATAGTTTCTATAAGCGACGGGACTCTTATATTCTTTGTAG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTAATCCACCGTGTGGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 321802-322138 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048795.1 Hydrogenobacter sp. T-8 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 321802 35 100.0 43 ................................... GATTCGTACTCCACAGTATCATCAGAAACATACATCTTGAAAA 321880 35 100.0 44 ................................... TCTCCAAGCACTGCTCTTATAACATCTCCTGCAGTGTTTTGCCC 321959 35 100.0 39 ................................... ACATCCGTTTGGATATTTGTTGCTTGAAACTAGTCTATA 322033 35 100.0 36 ................................... ACTAGGCAAGTCTTCTTTTACCAAATACCTGGAGGA 322104 35 97.1 0 ......T............................ | ========== ====== ====== ====== =================================== ============================================ ================== 5 35 99.4 41 GTTGCACTTTTATCTGACCCGTGGGGAGTTGCAAC # Left flank : GGTTATGTATCTCACAGGCTTTGTAGGCAGGTTTGAGCTGAAGGGAAACCCAGAGAGCCTAAGGCTTTTATATCTGAAGGGTTGGGGCGTTAGGACAGGAGAGGGTTTCGGCTTTGTGGATGTGTTATAATATGAGTAGTGGATTTTCGGGGGCTTTTGCTCCCGTGATATCTTGGCAGTTGAATAGGGCGAGGTTCTTGTAAAAACTCCACGGGTTTTTTGGCTTTTGACTTGTTGCAAATGATACTCGTCTCAAAATTTTATGCATAAGACAGAGTTTTTGAGATTTTGTCTACCTTTAGCTTTTGGTTGTTTTACAAGGCTTTTGGAAGTTTTTGAGATTTTCAGTTTTCTTGTGTGCTTCAGAGCAAGATGTATCAACAACTTCGTGTATAAGCCTTGATACTCAAAGGTTGGATGCGTGTTTATGATATTTATCATGTCAAAAGTCAAAAAAGAGCCTATTCTAATCTTTGTCTTTCAAGGACTTTAAAAGTAGG # Right flank : CTACTGTTATCCTTTAGATAAAAAGATGTCAGATTTCCAAGACCTTCCTCGTTATATAAATTCATAGCATGAGTTACCCGGATAACCTGAAGATTGGTATAGCTTTTGACACTAATAGTTTAATAAGGTTCAAAGACTGTGATGCTATCATCTATTTTGGAGACGAACCTGAAGAGGTCAATACACCTCTTGTAATTGTCAACCAAGATTATAGGATAAAATTTTGCAACTTCCCAATTATTGACCGTGAAAAAAGTGCAGAATATATAAGAATAACAAGCTACTGGCTACATGAAATATATAAAAAGCCATACGCATATATAGAAAAGAGATTTCACGATCTGCCAACCAAGTTAAATATATTTGAAATTATAAAAAGGAGAAAGAAGTATTTCAATATAGCTATTGCACTCTGCGTACCTATATTCTTCCTATATGAAGGTATTCCTTTAAGTAAACCATTTATTCCCTATGGTTTCTACAACATTAAAGAAAAATTT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTTTTATCTGACCCGTGGGGAGTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 445469-445128 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048795.1 Hydrogenobacter sp. T-8 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 445468 30 96.7 41 .............................C AGTTTTGAGGTGGGGTTTGTTTAACCTGTTCCATTATTACA 445397 30 100.0 36 .............................. GCGAGGGGTGGCGGTCTTGCATGGGTAAATTTAGAA 445331 30 100.0 37 .............................. TAGCAAATGCTTATCTATCAAGCATTTTCTAATAGCT 445264 30 100.0 37 .............................. ACCTTTCTCAACACTATTGCTCGCCTTTTCCTTTACA 445197 30 100.0 10 .............................. TCCTTTCTAA Deletion [445158] 445157 30 73.3 0 .....CT..T........A..AC.C....A | ========== ====== ====== ====== ============================== ========================================= ================== 6 30 95.0 32 GTTGCTAATCTACCGTGTGGAGTTGAAACT # Left flank : GACATCTTGGCAACTGAATAGGGCTTTTGATTCTTGAGGCTAAAGGGCTAGTATTCACTAAAGAGACTTGAGAAGTCCGTCCTCGTCAACTTCCATTATGGTAGTCTTTTCTCTGAGCTTTTCTAACTCTCTTAGCTTATTTGCTATCAACTCTCCCATTGAGATGTTTTTCTTTATGCTCTCTATCCGTAGGCTTTCCCAGAGGTCGTAGGGTAGGATAACAGTGGTTTTCTTGTGCTTTTGCCTTCTCTGAGCCTTGTTTTTCATAGCTTATATTATGCCATACGACCGTATGACCATAACGCCGTAAAAACATAAATACGGTTTTACGGCGATACGGCGTATAGCTCAAAGCCTTGTCTCTCAATGGTTTAAATTTGACAATACCACACTCAACCCTGCATGACCTGCCACTTCTGGCAAACCACCTTCACTTGAGAGGGGTATCCCCTTGACAAAAGGCTTGATATGTCTTATTATTCTTTATGTGGCAAGTTGAG # Right flank : TACGAACCTCTCAAGAACCTGCAAAACTTCTGCCTTTTTATTTCTGTAGCTCGCTCTGTTGCAGACCAGCATGGCGGTAGAGGTGGTTATCTCCTCTATTACCGCAAGATTATTTTCCCTCAAAGTCCTTCCTGTTTGCACCAAGTCCACAATAAAGTCAGAAAGTCCAATAAGGGGTGCAAGCTCTACTGAACCGCTCAGGGGTATGACCTTACACTTCACGCCCTTTTCTGAAAAAAATTCTTGAGTTATGCGAGGGTATTTAGTGGCAACCTTTAAGTATGAGCTTTTGAGGTATTTTTCTCTGTTTTCTTCCTTGCCTGCCACCACTATCCTGCAAAAGCCTATTCCAAGGTCAAAAAGCACATACAGGTCTGGTTTTTTCTCAAGTAGGACATCTCTGCCAACCACTCCAAGGTCCGCTACGCCGTTTTCCACATAAACAGGCACATCTGAGGGTTTCACAAGGAGAAACTCATAGTCTCCAACCCTTACGCTTA # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.44, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTAATCTACCGTGTGGAGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 6 736503-737388 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048795.1 Hydrogenobacter sp. T-8 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 736503 29 100.0 35 ............................. CAAATAGGATGGTCTGCTTGTCTATGGATATCTTG 736567 29 100.0 36 ............................. TCGATTAGCCATTTCTCTGTTATGCTCATAACCTCT 736632 29 100.0 36 ............................. TTTGCTGCAGAAGCTATTAGATAGATGTCAAGCGTT 736697 29 100.0 37 ............................. ATTTTTTCAGGCGGGTTTCCTTTCCACAAACTCACAT 736763 29 100.0 36 ............................. GTTATACTAAGGATCAATTTTGGGTTAAAGAACATC 736828 29 100.0 37 ............................. TCGCGCACCACTTCTGCCAGTATCTGGCAGAAGCGGG 736894 29 100.0 37 ............................. CTCTTAACCTTTCAAATCCCTCATCCAACCTTAAGAA 736960 29 100.0 39 ............................. TCAAAGAGGTGATGTCCTTCTCCTTTAAATCCTCCTTAA 737028 29 100.0 38 ............................. TGTACCAAAAAGGCTTTACCTACTGCCTTTACGAATAA 737095 29 100.0 36 ............................. TATGAACTTACTGAAGGAAGGTATATCCGCACTACT 737160 29 100.0 39 ............................. TCAAAGAGGTGATGTCCTTCTCCTTTAAATCCTCCTTAA 737228 29 100.0 37 ............................. TATGCTGTGTCTATCCGCCTCAAGACCTGTTGTTTCT 737294 29 100.0 37 ............................. TAAGAGTGCGAGGGAACTCTCTTATCCTTTTGCTAAG 737360 29 96.6 0 ..........C.................. | ========== ====== ====== ====== ============================= ======================================= ================== 14 29 99.8 37 GTTGCTAATCTACCGTGTGGAGTTGAAAC # Left flank : GACATTTTGGCAACTGAATAGGGCTTTGGGTTTTTGAGAGCAAGGGGATAGTATTCACTCAAGAGGTTTGAGAAGTCCCTCTTCGTCAACTTGCATTATGGTGGTCTTTTGCCTTAGCTCCTCCAACTCCTTTAACTTTTTGGCTATTAGCTCTCCCATTGAGATGTTCCTTTTTATGCTCTCTATACGCAGGCTCTCCCAGAGGTCGTAAGGTAGGATGATAGTGGTTTTCTTGAATTTTTGCCTTTTCTGAGCCTTGTTTCTCATAGCTTATATTATGCCATATGACCGTATGACCATAACGCCGTAAAAACATAAATACGGTTTTACGGTAATACGGCGTATAGCTCAAAGCCTTGTCTCTCAAGGATTTAAATTTGACAATACCACACTCAACCTTGCAGAACCTGCCACTTTTGGCAAACCACCTTCACTTGAGAGGGGTACCCCCTTGACAAAAGGCTTGATATGTCTTATTATTCTTTATGTGGTGAGTTGAG # Right flank : CCCAGCATTGAAAATATGGAGCTTAGGCTATAATTTATTAGCCATGTTCCAGTTTACTGAAGAGCAAATAAAGAGGTATGCAAGGCATATAATCCTGCCAGAGGTTGGTGGCAAGGGACAAGAAAAACTTCTCAAGTCAAAGGTGCTTGTGATAGGTGCTGGTGGGCTTGGGTCTCCTGCCATATACTACCTTGCTGCTGCTGGTGTAGGCACAATTGGCATAGTGGACTTTGACGTGGTGGACTATTCTAACCTTCAAAGGCAGATACTCCACAACACAGAAAGAGTAGGCATGCCAAAGGTAGAGTCCGCACGCATGACAGTGGAAAAGCTAAACCCAGACGTGAAGGTCATAACCTACAACACTATGATAAATAAGTCCAACATAATGGATATCATAAAGGACTATGATGTGGTGCTTGATGGGACCGATAACTTTCCTACGAGGTTTCTCATAAACGATGCTTGCTACTTTCTTGGAAAGCCTCTTGTCTCCGCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTAATCTACCGTGTGGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 7 1178958-1179118 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048795.1 Hydrogenobacter sp. T-8 chromosome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1178958 29 100.0 38 ............................. ATGAACTACGATGAAGCCGTAGAGGTCGCAAAGAAGCA 1179025 29 100.0 36 ............................. TCCAGTTGGTGGGCTTTTGTCTCTTGGATTATTTTC 1179090 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 3 29 100.0 38 GTTTCAACTCCACACGGTGGATTAGCAAC # Left flank : TGAGGAACAGACATTGAACTTGCAAATGAGCCAAGAAGGGAGATATTAGTTAAAGATGACCCAAGAGGAGTTTCTTAAGAAATATTCTTGGGATGGAGAAAGGAGCAGGGAGGAGCTTTTGATAAGAGCTATACTATATGCCAATCCTCTTGAGATTGCACCGCTTTTTAGCAAAGAGGAGTTAAAAGGGATATTTCTAAACAATCTCCATAGGTTTCACCGCAAGGATAGGAGTTTTTGGAAGGTGGTTTTAGAGGTTTCTGAGGATGAGCTTAAGAGATATTCAGAAAAGAACTTTAGAGAAGGTAGTATCCTTATCCCTTACTGAAGGCTTTTACTTGGCAGGAGGAACAGCTTTGGCTATTAGATATGGACATAGACATCTCTCCCTAAAGAGCTTATCAAAATCCTTAACAAAAGGCATGTCTTTTGTAGGTGTCTATTCTAATAGCCTTTGACTTAAATAAGTCCCTTGCTTTTTCTATCCAATCCTCTATGGG # Right flank : CCTCAACTCACAACATAAAGAATAATAAGACATATCAAGCCTTTTGTCAAGGGGATACCCCTCTCAAGTGAAGGTGGTTTGCCAGAAGTGTCAGGTCATGCAGGGTTGAGTATGGTATTGTCAAATTTAAACCCTTGAGAGACAAGGTTTTGAGACATATGTCATCAAAACATCAAAGCATCACTGCATCTTTATGCCAAAACATAAAAGCATAAGGGCATTAAAATATAACCTATGAGAGGTAAGCAGAGGAAAAGGCAAAAGTTTAAGAGAACCACTATATCTCTACCCTATGACCTCTGGGAGACCCTGCGTATAGAGAGCATAAAAAGGAACATCTCAATGGGAGAGCTAATAGCCAAAAAGTTAAAGGAGTTGGAAAAACTCAAAGAAAAGACCACCATCATGCAAGTGGACGAGGAGGGACTTCTCAAGCCTCTTGAGTGAATACTACTCCTTTAGCCTCAAGAATCAAAAGCCCTATTCAGTTGCCAAAATGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTCCACACGGTGGATTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 8 1460940-1460644 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048795.1 Hydrogenobacter sp. T-8 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1460939 29 100.0 41 ............................. CTTTAGTGAGAGGCTTTCTAAACCTTATCCAGCCTTTGACG 1460869 29 100.0 38 ............................. TGAAGTTTACAAGGAGGGAGAGCAAAACCCTATTGTAA 1460802 29 100.0 36 ............................. CTTTTCTGGGCGTCCTTTGGTGTTGGTATGGCAACG 1460737 29 100.0 36 ............................. TTTGTCAGCACTTCCTGTGCCTCCTCTATTTCTTTG 1460672 29 79.3 0 .......A.............G.AAAA.. | ========== ====== ====== ====== ============================= ========================================= ================== 5 29 95.9 38 GTTTTAAGCCCACCGTGAGGGATGGCGAC # Left flank : TGGAAGAGGTTTTGAGCTATAATAATCCCAAGGCATTTTGTGGGAGCTTTGCCTCCCTTGACATTTTGGCAGTTGAATAGGGTTTTTGTTCCTTGAAGTTGAGGGGGTAGTATTGACTAAAAGGCTTTGACAGGTCTCTGTTTGTTAACTTCCACTGTGGCGGTCTTTCCCTATAGTCTTTCTGACCTGTGGGTTTTCTCAAAGGTGATAGGGTAGAGATATGATGCTTTTCTTGAATTTTTGCCTTTTGTGAGGATTGTCTTTCGTAGGTTATATTTTAATGCCCTTATGCTTTTATGTTTTAGCATAGAGATGCAATGATGCTTTGATGTTTTGATGACAGATGCTTCAAAGCCTTGTCTCTTAGGGGTTTAAATTTGACAATACCACACTCAACCTTGCAGGACCTGACACTTTTGGCAAACTACCTTCACTTGAGAGGGGTGCTACCCTAATAAAATGCTTGATATTTCTTGCTTTTCTTTGTGTGTAGGTTTGAG # Right flank : TTTTAAAGACAAAAAATAGAAACTCTCAAAGACCTGTAAAAAGGACTACTCTCCCAACATAAGAAAACGAGGAGTAAAAAGGCTATCCCTTCTAAACTCCTCTCTCTCAAAAGGATAATCCACCCTATAGTGCACGCCTCTGCTTTCCCTTCTCCAAAGAGCACAGCTAAGGGTAGCCATAGCGGTTAGGCTTATGTCAAAAAGCTGGCGGTTTTCTATGGTGGGTTTCCAGTCTTTCCATGTTTGTAGCCATGTGCTTAGCTTTTCAAGTGCCTGTTTGAGAGAGGTCTCTTCCCTTTCCAGTCCACAGTTTTCCCACATAAGCCTTCTCAGGTCTTCAAAGGTGTAAGGTGGGTCTTTTTGCCCTTCCCTTTTGTTTTTGTAATAGGTCTCCTTTGGCTTTTTCAAAAAGGAAAGGTCATGAAAAATTCTGTAGGCGGTTCTGTATCCAAAAACCAAGCCCTCAAGCAAGGAGTTAGAGGCAAGTCTGTTTGCCCCAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAGCCCACCGTGAGGGATGGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 9 1567203-1567429 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048795.1 Hydrogenobacter sp. T-8 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1567203 29 100.0 36 ............................. CGGCATAGTGCGGAGGTATTAAATAGCTTTTTTAAG 1567268 29 100.0 37 ............................. AGAAGACCTAAAAAATGCAAAGTTGGCAGAAGCTCTT 1567334 29 100.0 38 ............................. ACGGACAAGCCGTTCTGCTCGTATATGATTATCAGCTC 1567401 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 37 GTTTTAGTTGCCAATTGTGGGATTGAAAG # Left flank : CTCTTACTGCCATTTCTGCGAGCATCTTCCTGTTTAGGGTTATACCAGCCTTTGAAAGTCCGTGCATAAACTTGCTATAGGAAAGTCCATGAGCCCTGACCGCTGCGTTTATACGAGCAATCCAGAGCCTCCTAAACTGTCTCTTTCTTTGCCTTCTATCTCTATACTGATACTGAAGAGCCCTAAAGACATATTCCTTTGCCCTTCTGTATACGTTCTTACGCTGACCTCTAAAGCCCTTTGCCAGCTTTAGTATCTTCTTCTTAAACTTCCTTGAGGATGGACCCTTTACACGCATCTCTGCCTCCTACAGTTTTCTGACAACTGAATTTTTAATTATAGCACAGACAAACCGCAGTCGCTGGAATGTTTCCACCCTGCTACGGAAATAGGTAAAAATGCACTACCGCCACTTGGAGAAAAAATGCTTGCTTCCGGCGATGGACCTATGTTATTATAGTAGTTGCTGCTGAAGGTTTTTTAGAGTTACATGGTAACGG # Right flank : GGGAATAATTACATCTGTGGTCGTTTTTTCAGATATCCCTCATAATTTCCTCCGCATGGTAAGAAGACCGGGCAAGGGGTTTGGAGAGAACCCCTTCAAATCCCATCTCAAGTGCCATCTCTTCAAGTTTTTTGAAGTCTTCTTCATGATAGAGTTTTTTCACAGGATAATGTCTGGGGCTTGGTCGTAGATATTGACCTATTACAAGGATAGAAACACCTACCTTTCTAAGGTCTTCTATGGTCCTAAGTATATCCTCCCAGCTCTCACCAAAGCCCAGCATAATACCAGATTTTACAGGTGCCACCTTGCTCTCCGAATAAAACCTGAGAACTTTTAGACTTCTTCTGTAGTCTCCCTGAGGTCTTACTTCCTTAAAAACCCTCTCCACAGTTTCTATGTTGTGAGAGAGTATGCTTGGCTTTGAGTTTACCACCTTCTCCAAAGACCTCTCAGAGCCCTGAAAGTCCGGCGTTAACACCTCTATCCTTAGATGGCTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTGCCAATTGTGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 10 1615046-1615602 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048795.1 Hydrogenobacter sp. T-8 chromosome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1615046 29 100.0 39 ............................. CATGTCTTGGGTTTTCTGCGTAGGTAGGCGGGTATGGTT 1615114 29 100.0 34 ............................. GGAGATTTTGGCTGAACTTAAGAAGTCTGCTGAG 1615177 29 100.0 36 ............................. TAAGTTCATTATACTTTTCCTCGCCTATCGCATCAA 1615242 29 100.0 37 ............................. CATGGCATTCACGAAACGTGGGTCAGCTTTATCTAAA 1615308 29 100.0 38 ............................. GGTAGGTATCCAATGCCTATAATGAGGAAAAGCCAATA 1615375 29 100.0 37 ............................. TTGATTGAGGATGAGGGTTGCTATGTTTTTCCCTTCT 1615441 29 100.0 37 ............................. GTTTTATTTCACCGTCTTTGACTGCAAGCTTCCATAC 1615507 29 100.0 38 ............................. TTCTGGAACGCAGAGCTTATTAAGTAAACTCGCAACAA 1615574 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 9 29 100.0 37 GTTGCTAATCCACCGTGTGGAGTTGAAAC # Left flank : TCTCATAACTTGTATATATGTTATACTAATCTCTAGCTGCAGTTCTGGGTTAAAAGCCCAGTGGCATCTTGGCAATTGAATAGGGTTTTGCTCTTTGAAAGCAAGGGGGTAGTATTGACTAAAGAGGTTTGAAAAGCCCTTCCTCGTTAACTTCCATTATGACGGTCTTTCCCTTTATGCTCCTTATTTGTAGGCTTTTCCAAAGGTAGTAGGGTAAGCGATGGTGGTTTTCCTAAATTTTTGCCTTTTCTGAGGCTTGTCTTTCATAGGTTATATTTTAATGCCTTTATGCTTTTATGCTTTGGCATAAAGATGCGGTGATGCTTTGATGTTTTGATGACATATGCCTCAAAGCCCTGTCTCTCAAGGGTTTAAATTTGACAATACCACACTCAACCTTGCAGGACCTGACACTTTTGGCAAACCACCTTCACTTGAGAGGGGTGCCCCCTTGACAAAAGGTTTGATATGTCTTATTATTCTTTATGTGGTGAGTTGAG # Right flank : CTACACATCCAAAAAGCTATAAACTAATTACCCATGAAGTTGGCAGTCCTCACTGGTGCTGGCATATCCGCAGAGAGTGGTGTTCCCACCTTTAGGGGGCAAGGTGGTCTTTGGAAAAGCTACAGACCAGAAGAGCTTGCCACTCCCCAGGCTTTTAGAAGAAACCCAGCCTTAGTGTGGGAGTGGTATCTTTGGAGAAGGGGCGTAATAGCAAAAGCGGAGCCTAACGCTGGGCATATTGCACTTGTGGAGCTTGAGAGAAAATACTGCGAAGACTTCCTGCTTATTACCCAAAACGTGGATGGACTTCACCAAAGGGCTGGTTCAAAAAGACTTGTGGAGCTTCATGGGAATATATGGAGGGTCAAATGCCTCTCCTGTGGTGCGGTTTACTATGACTATTCTGTAAGCTACGCACAGCTTCCACCTGCCTGCAAGGAATGTGGTGGGCTTATTAGACCAGATGTGGTCTGGTTTGGTGAGGCTTTGCCTGAGGATGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTAATCCACCGTGTGGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //