Array 1 6660-6452 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASP01000019.1 Gilliamella apis strain A-TSA2 NODE_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6659 28 100.0 32 ............................ ATTCGGTCAGTTTGCCTAACATTACAGCCGAC 6599 28 100.0 32 ............................ TCTGAGCCGAGGTTGGTGACCGGCAGCGGTAC 6539 28 100.0 32 ............................ ATAAATAAGTGTTTCGAAATACCCATTAATAG 6479 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GCTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : GTTTTAAAACTAAAATTAGCTTGCTATAAACATAAACGTTTATTTTGGCAAATAAGTTTAGTGCTTCCTATTTAGCGACATCCGCAAAGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGAAGTTTGCCAAGGAGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTTGTAAAGAGGGTTGGCGGCAACCCTCTTAACTCGGACGTATTCACCGCATAGAACTAGCCACCAAACAACAAACGTCCGAAACTCAAACAATCCAAAAAATAAAGAACCAAAAAATTTTGAGGAAAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATGCATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTGCCAACAACATTTATAGTATATCCGGCTCTA # Right flank : TAATATTGTATAAATTAAAAATCCAGTAGCTCAGGGTTAATACCTAGTGCGCTAGCTATTTTAATACGTGTTGCTTTCCTTAATTTTTGACTTTTTTCATATTGAGAATATGCAGATTGACTGATACCGATTTTATTGGCAACTTCAACTTGAGATAATTTTAGATATTCTCGCCATGCTTGAACTGGTGAATAATTATTATCAAAAACCAGATTAACAACTTCGTTGGGCACACCAGTATCAGTATTAATTTGTTTAATATTCGCTAATTCTAAATATTGTGTATAAGGCATAACCACAAACTGTGGTTGCCCTTGTTCATTATTAATAAACTGTATGTTATTAGTAAGTGCGTTCATCTCGTTTTTTCACCTCTTCGATAGAAACAATATGAATAATGCCATCAAAATTAAAAAACACTCGATAATTTCCAACTCTTAATCTACTGATATTTGTAGTTAGTCAGAGATTTTACATTAATGCAATTAGGCATGTTTGAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18209-18415 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASP01000024.1 Gilliamella apis strain A-TSA2 NODE_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18209 28 92.9 32 ...T...G.................... TACACAGACAAATTTAATAATATTCACGAGGC 18269 28 100.0 32 ............................ GATTTCACAAGAACAACGCGAATTTTTTACTC 18329 28 100.0 32 ............................ AGCATTAATAATTTGTGATGCGTTTTTTATCA 18389 27 92.9 0 ............A...........-... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : CCCTGCCAAGGCAATGGCATTGACGTTAACGAAGTGGGTGTTAAAAAACGATTTTGTGGTGCGACATTGGCAATGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCGCAAAACAACAAACGTCCGAAACTCAAACAACCCAAAAAATTTTGAGGAAAGGGGTTTTTGAAATCTAAAAACTTCCTATTACTAACCCTTTTTTTTGACTTAAAATAAAGTATTTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : ATTAATTAAAATTATAACACTCGAAATCCACCAAACTAAAAAAGTTTAGCAAAGGAGTTTTTTAGGTGAATAAATTCACCACATGTTATAATTATGTTTAATTATAATTAACTCTGTAAATATGATGAATAATAGTACAATTGATAACCAATTAAATGAAAAAATGGTGCTTATTTTCAAAGCATTATCTGATCCGGTTAGAATAGAAATCATTAAATATTTAAAAAGTATAGAAACAGAGGTTATCTGTGGTGAAATTGGTCAAGCAGTTGGTATTAGTAAACCCTCAGGAACTTATCATTTTAGGTTATTACAACAAGCAGAATTAATTAATGTAAGAAAGAGTGCTAGGGAAAAATATGTATGGCTTAATAAATCAACATTTGATAAATATGTTACCGGGTTTTTTGATAATCTTTAAAATACTCAAATATTGATTTATTGTTGAATTTATTGTTTTGATTTTATCAAATATTATTTTTTATCCCTTGTAGTTAACC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 813-605 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASP01000021.1 Gilliamella apis strain A-TSA2 NODE_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 812 28 100.0 32 ............................ CGCTGAGACAATAAGAAAACATATCAAAAATG 752 28 100.0 32 ............................ ATGTTGTAGGTTTATAACCTGCGGATGGAGTA 692 28 96.4 32 ........T................... ACTTGAGTGGATGAATGGCGCATTTAATCGTG 632 28 82.1 0 .....................AAGA..T | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.6 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : GGATAAGAAAAATAGTGTTAGGGCGATAAAAAGCGATTTTGGGCGCGACATTCGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCAGTTGCGTGGTCGCCGCGTGAGATGGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAATAAAGAACTAAAAAATTTTGAGGAAAGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATTTTTAAAAATCAATATGTTGAAAAACCTCTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : ATATAAGTGGCGGTATAATTAAGAAATACACTGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAGAGGGGATAAAGGGTATATTATTTCTAATAAACAGCAAATAACCGATGCTATTTTCGAGCTATCAGTGTTCATCTTTACAAAAGTTAACAATTAAACCGCCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAATTTCACCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTCACTGTTGTTTATTATTTCAGCAATTTCCAAAATTTCCGAAATTTCGGCAAAATTTTTCAAAATTTCTTAATTTAGCCTGTTTACCTCGGCCGATGGTTTTGGTATTA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5664-5337 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASP01000021.1 Gilliamella apis strain A-TSA2 NODE_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5663 28 100.0 32 ............................ TAAATCATTAGAGGAGGCGCTAATGGATAATG 5603 28 100.0 32 ............................ GTTGAAAGAAACGCTACCGGTAGCGCCTGAGG 5543 28 100.0 32 ............................ GAGTTGGTACAAAACGATGACGATTTTAAAGC 5483 28 100.0 32 ............................ AGACGTCACCACGTTTCTTGATCGACATTTTT 5423 28 96.4 32 ....................T....... AGCTGATATTTTCAGGATCTTTAATGGGCATG 5363 27 92.9 0 ....................-.A..... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.2 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : TTAGTTCTTAGGTATTGAAGCTGAGGATAAGAAAAATAACGTTAGGGCAATAAAAACGATTTTGTGGCGTGACATCCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAACAGCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCGCAAAACAACAAACGTCCGAAACTCAAACAACTAAAAAATAAGGAACTAAAAAACTAAAAAACTTGAGGAGAGGGGTTTTTGAAACTTATAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATATAAGTGGCGGTATAATCAAGAAATACACTGCTTATGGAGTGGGTTAAAAATGGTGATTTTTTAAGAAGGGATAAAGGGTCTATTATTTCTAATAAACAGCAAATAATCGATGCTCTTTTCGAGCTATTAGTGTTCTTCTTTACAAATGTTAACAATTAAACAGTTAAAATAAGTTGCATCGAGTTTTTTCAATTACTATAATTTTTCCACTATATTTATATAAATGGATAGATTTTATACTTTTTAGTATAAAATTGTAAATAAATCATTAATTTAATTGACAGGAATGTCGGATATGTGTTATAATTTAAAACACCAAACACCAAACACCAAACCTGCCCAACCTATAATTTAACCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTAATCGCAGTTTATTTTTTCAACAAATTCGGCAAAAGTTTTCAAAATTTCTTAATTTAGCCTTTTTATTTCGGCCGATGGTTTTGGTATTAACCTTGGTTGTTTTAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2500-2707 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASP01000041.1 Gilliamella apis strain A-TSA2 NODE_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2500 28 100.0 32 ............................ AATGGACGATAGAGGAAACGATCAAAATCTTG 2560 28 100.0 32 ............................ TGTCCAGAGCGTGAATGGTAAAATTGGCAACA 2620 28 96.4 32 ....................C....... CTTCAGGTACATACAACCCTGTTTTTGGATAA 2680 28 92.9 0 ...C...A.................... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTTACTGCCGTGTAGGTAGTTTAGAAA # Left flank : CCATCCAACAAATCGCTAACGTTAGTTATAACATCAGCTAGTTCCAATAATAAGAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAATGTGCTGACAACTGCGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGAGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAATTGAGGAACGGGGTTTTTAAAACTTAAATTCCTACTTATTGTTAACCCTTTTTTTAACTTAAAATAAAGTATTTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTGCCAACAACATTTATAGTATATTGGATTCTA # Right flank : ATACACAGCTTATTGAGTAGGTTAAAATGGTGATTTTTTTAAGAGGGGGGATAAAGGATCTATTATTTCTAATAAACAGAAAATAATCGATGCTGTTTTCGGGCTAGCAGTATTCTTCTTTACAAAAGTTAACAATTAAACCATCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAACATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACGCAACACGCAACACGCAACCTGCCCAACCTATAATTTCACCTCTCTAAAGTTAAGCTCATACCGTTTATTATTTCACCGCAGTTTATTATTTCGAAAATTTCCGAAATTCCGGCAAAATTTTTCAAAATTTCTTAGTTTAGCCTTTTTATCTCGGCCGATGGTTTTGGTATTAACCGTAGTTGTTTTACAGTCTATCTCTTTTGC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3323-3470 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASP01000003.1 Gilliamella apis strain A-TSA2 NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3323 28 100.0 32 ............................ TTCCCCGCAATTACGAAATGATTTAAATAGTA 3383 28 100.0 32 ............................ ACAAACACTAAACGCCTAGGGAATTGGGTAGC 3443 28 96.4 0 .........C.................. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCTGTATAGGTAGTTTAGAAA # Left flank : TTAGGATGTTAAACAATTATTGCCTTGCCAAGGCAATAGCGCTGACGAAGAGGGCGATAAAAGCGATTTTGTGGCGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAGACCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTCAAAGAACTAAAAAATAAAGAACTAAAAAATTTTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAACACTTTGAAAAATGGCTCAAAAAAAAGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATACTGGATTCTA # Right flank : ATCGAGTTACAACTCCTCAAATTGCAGAACACGGTTCACTACCGCGCAGGCGGTTTTTTTTATGCCTGTCATTCGACCACTCAGCAGATGAAGTAACCAAACTCTTACAAAGAGCTAAAATTATCATTGATGTACAAAAAAGCAACGATAAGCTACGTAAAAATTGTAGGTAAGGATTATTTTAAAGATGATTATGAGAATGGAAATTTGTTTCAATATTGAGTGACCTTGTTTGTTGATTATGAAGCTAAAAATGATTTTGGTGTTGATTTAAAAAACACTTCAATATGTTATTTTTATTCTATTTTAATAAGAAATGATTATTTTATGTTCCCAGATTTTGATAAAATGGCGATCTCAAATAAAATATATAGTTATATTGATTTAATGACATCAATAGAACATTTTCATTCTTCTTTATTTGATATTGGAAAAATAAGTATTGTCGATAAAATATCGTACCAGATTGATAAAAATAATTTCCTCTATTATGAGAATGA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCTGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 71069-70064 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASP01000003.1 Gilliamella apis strain A-TSA2 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71068 29 100.0 32 ............................. TAAACAGTTTTACCGCCCTGTTTAACCGCTGT 71007 29 100.0 32 ............................. CAATTATTTTTTTCATGTTTTATTCCTGTTTA 70946 29 100.0 32 ............................. CACCGAGAGCAGCCGCTTTAATAGTAAGTGGC 70885 29 96.6 32 ............................A TACTGAAGCTCATAACGATGCTCACACATAAC 70824 29 100.0 32 ............................. TTTTTAATCACCACCAACATGCCAATATTGGA 70763 29 100.0 32 ............................. CTATCAATATCAATATCGTTCCATTCTAAACC 70702 29 100.0 32 ............................. GCTGGCGACAAGGTGATGGAACTTTATGGAAA 70641 29 100.0 32 ............................. TAAAATCTATTGAACATAATGGCGACCTATAC 70580 29 100.0 32 ............................. TTAATAAAATCATTCGGTGACGGTATAGTTAA 70519 29 100.0 32 ............................. CTAATTGCCGATGAGGTTTTGCCCCGTGTGCC 70458 29 100.0 32 ............................. CAGAAGTCGAGGCTAAAACAAACTATCTAGGT 70397 29 100.0 32 ............................. CTAATCCATCATTAGGTCATACGTTTACCGAT 70336 29 100.0 32 ............................. CTGGTTGTCTAGTTGTAACTAAAATGAAAGCA 70275 29 100.0 32 ............................. AATTTAACTTTTTCTCCCACATTGAGATTATT 70214 29 100.0 32 ............................. ATAAATACAATATCAATTTATCGGATTCTGAC 70153 29 100.0 32 ............................. GAACAAAAGTTAATCCCTTGGATATAGTTAGT 70092 29 86.2 0 .....................C..TTG.. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.0 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTCAACGATGATGGTGAACCAACCAGCACAGCCGGCCGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTGGTGGTAGTCACCCGCTACTTTGGCGGTATCAAATTAGGTACCGGCGGATTAATCCGCGCTTATGGGGGCTCAGCTAGCCACTGCTTACAACAAGCTGAATTAATCGAACTTATTGCTAGAACATCATTACAATTTCATTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAAATTTTGATGCTGAAGGTGTCAAAGCGACTATTGCTATCACACAAGACAATTTACTAACCCTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGGTTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGCAAAAAAATTGGTAGAAATTGTAGACTGCATATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : TTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCGGGCGGTTTTTTATTGCCCCGAATGCCTAAATAACTTACTATTGCCTAAAAAGGAGATGGCATGAAAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAGGAGATGTTACTTGGTGAGTGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATCATCGATAAAAACAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5480-5272 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASP01000044.1 Gilliamella apis strain A-TSA2 NODE_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5479 28 96.4 32 ............T............... TTAATTAAACAAAAAGCGTTAGATCGTATTAT 5419 28 100.0 32 ............................ AGCACGCTAGTAAAAGATGTCGGTGCTGGCGG 5359 28 100.0 32 ............................ CGCATTAGATGAAAATAAACTAAATACAAACA 5299 28 78.6 0 .................CTTT....TT. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : AGGTATTGAAGCTAAGGATAAGAAAAATAACGTTAGGGCGATAAAAAACGATTTTGTGGTGCGACATTCGCAACGTGCTGACAACTGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACGTAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCGCAAAACAACAAAACGTCCGAAACTAAAACAGCCAAAAAAATTTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATTATTAAAAATCAATATATTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATGGGATTCTA # Right flank : GTAATTAAAATGGATTTTTAGTATTTAAAACTCGCTGTTCTCAAATTTATCTATGAAATAATTAAAACGCTTATATAAGCGTTTTAACTCTGATTAATATCATTATATCTACTATAAACTATTAGAACATTAATAGTTGTACAATTAAATTGCAGTAATATAGACCTGATTATTCAGTAAGTTTTTAGGATCAAACTGTTGTTTAATTGCACGCATTAATTGGCGATTTGCTTCAGGAATTGCAGCATTATAATAACTTACTTTCGCCGTTCCGATGCCATGTTCTGCTGAAGGCAATCCTCCTAATTCAAGACATTTTTGATAAAGCGCTTGGTGAACGTTTTGCAGATCAGATTGCCATTGTTTGTCATCACGATTATCACGCAAAATGCATAGATGAATGTTACCATCACCAGCGTGACCAAAGGCTAACATACGCATTTGAGTTTGTGCTTCTAGCTGTTTGGTGAAATTGATAAAATCGCTAATGCGATTTATTG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 85182-84975 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASP01000006.1 Gilliamella apis strain A-TSA2 NODE_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 85181 28 100.0 32 ............................ AATTTGGTCAGGCAAAGATGCAAAAGTAACTG 85121 28 100.0 32 ............................ CTTAGTTAAGGGCGAGCCTTTCACATCTTTCT 85061 28 100.0 32 ............................ ATTACGAAACGCGATACCAAAACAGCGCAATA 85001 27 92.9 0 ....................A..-.... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : AGGTATTGAAGCTGAGGATAAGAAAAATAACGTTAGGGCGATAAAAAACGATTTTGTAGTGCGACTTTCGCAACGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCTGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACGTAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCATATAAAACTAGCTACCAAACAACAAAACGTCCGAAACTCAGCGAACCAAAAAAATTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAACACTTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATTAATTATTTCTAAAAAGATTAGGAAAAATTTTTCAAAAAGCTAAAAATCCAAATTAGTTATAGCTTTGTTAAATAAAAAACCCCCAGTAATTGGTTGTCCAACTATTGGGGGTCACTTCATTATGAACGGTTTTTTATTATTGGTTAGATAATTTTACAATTATCCTTGGTATTTTTTCATGACAATTGACGCATTAGTACCGCCGAAACCAAAGCTATTAGACATTACTGTGGTTAATTCACGTTCGGTTGGCTCGGTAATAATATTCATGCCTACTGCTTCATCTGCAAGCTCGTCGATATTGATACTTGGTGTAATAAAGCCGTGTTCAAGCATAAGTAGTGAATAAATCAACTCTTGTGCACCGGTGGCACTTAATGAGTGACCAGTCATGGATTTGGTTGAAGAGATAGCCGGGATATTATCTCCAAATACTTGTTTGATTGCCCATAACTCTTTGACATCACCAACTGGAGTTGATGTACCATGAGTATTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 34298-34565 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASP01000018.1 Gilliamella apis strain A-TSA2 NODE_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34298 28 100.0 32 ............................ TAGAGGCGTGTGAACGAGCAGATATAAGATGG 34358 28 100.0 32 ............................ TGCAATCAAAGAGCTAAACGAACTTAAACGAC 34418 28 100.0 32 ............................ ATTTTAAAAAAGATTTTTCTACACACATTTTT 34478 28 100.0 32 ............................ GTACAAAAAACGGGTATAAGTGATGCGCTAGA 34538 28 92.9 0 ....................TA...... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : GAATTAAGAAAAATAACATTAGGACGATAAAAGCGGTTTTGTGGTGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTATCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACGTAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCGCCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTCAAAGAACTAAAAAATAAAGAACTAAAAATTTTGAGGAACGAGGTTTTTAAAGCCTAAAATCCTACTTATTGTTAACCCTTTTTTTTAACTTAAAATAAAGTATTTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : ATATATAAGTGGCGGTATAGGTAATATCAAGTAGTACACCGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAGAGGGTATAAAAGGTCTATTATTTCTAATAAACAGCAAATAACCGATGCTGTTTTCGGGCTAGCAGTATTCATCTTTACAAAAGTTAACAATTAAACCATCAAAAAAAGTTGCATGGTTTTTTCCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAATTTCATCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTCACTGCAGTTTATTATTTCAGCAATTTCCAAAATTTCAGCAAAATTTTTCAAAATTTCTTGGTTTAGTCTGTTTATCTCGGCCAATGGTTTTGGTATTAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 49595-49443 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASP01000009.1 Gilliamella apis strain A-TSA2 NODE_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49594 29 100.0 32 ............................. TGGCCGAAATTAAATTATATCTACATGAAAAG 49533 29 100.0 33 ............................. TTCATCAAGTTGTTTTTGAGCGGAAATGGATTT 49471 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 3 29 98.9 33 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : AGGACAAAGTTCACAAGCTAAAAGTATTATATTGAATTTTAATAAATGCTATAGCCGTGAACAATTCAATGCTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAAAGATAATATTGATCTTTATTTAGCATATCAACAAGATGGAATAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATGTTACAATTAGTGCATCTAAATGGGCTAGAATTAAAAAAGCCGTCCCACAACTTGACCAACAGCATCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTGTTAATTGAGACAGAAAAAGAACCTTCTTTTTATTCTAAGGAATTAGGCTTTTATCTAAATTAATTTAAAGTTAAATATTAATAATTTTAACTTGCAATAAGTTGAGTGAATTTCATACAGAAAAATCGGTGAAAAATTACTCCCTTATATTTCAATTATAAAACAATTAGTTATAATTAGA # Right flank : TACTGGCTAATTCGTTAAAACTACCTGACGAGATTTGGGTGAGGATGGAATACTTTGATCATCTGCAAAAATCAGTAGTTCGCCGTCGCTATATCTAACGTTTTATGATTGATGGTGAGGTTAAGCCAATGTTAGCTGTATTAGAGTATTTAAATGAACATAAAATAAAACCCAACCGCCGACACGTTGGGTAGGCTGCGCGTGGGATTGGAGGTCCTGTCGGAGACTGCCCGCGAATACCTTTTAAATAGTATAGGTAAAAAAATGACTGGCGTAAATATTGAATTCAATGTACAAGATGCACTAGACGCACTAATCAACATAGAATTTGCTTTGCTCGATACACATGTTTTATTTAATCATATAAGTGAAACATTACTTGATATTCATGAAGCACGCTTTAATACACAGGAATCACCTGATGGTATACACCATGGCAAGCATTATCACCATGGTATCAAGAAAGTAAGCCAAAACAAAAAGATAAAGCTTAACGCTCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67625-68265 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASP01000009.1 Gilliamella apis strain A-TSA2 NODE_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 67625 29 100.0 32 ............................. GGGTATGTGCAGTCAAATTAAAGGATTGCAAC 67686 29 100.0 32 ............................. GGAGACTTATCCGAACTTGTTGAATTTGGTGA 67747 29 100.0 32 ............................. ATCAATAAAAAAATCGGCAGGGCTTCTATAGC 67808 29 100.0 32 ............................. CCACGAAAACCGGGGATTAAACCTGTCAATAA 67869 29 100.0 33 ............................. CTACCGCCTTTGTGAAAAATAAAAGCGCCACCC 67931 29 100.0 32 ............................. TTATTAATAACTAATTTATAATTTATATGATA 67992 29 100.0 32 ............................. AAAAACATTAGAGCCTTTACTTAAAGCGTTAG 68053 29 100.0 32 ............................. CCTTTTTACGTGATGATGGTAGTAATAATACG 68114 29 100.0 32 ............................. ATTATGACAAGCGACTTGAAATAAAGAAACAA 68175 29 100.0 33 ............................. GACTAAATAATGGCAAAATTTAAATTAGTTGCA 68237 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.4 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTGTCTGCTGGTGGTATTGAACCGCCACCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCGCCTAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAAGTTAATGTTCTTTAAAAATTAGGAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAATTATCTATATTTAGA # Right flank : TTTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTGTAATGATAGCGTTTTATAAAAATAAAAACTAATAATCATATATATCGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAACATTAATCGTAAATTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCAGGCAAAACAACAGCCATCAATACTGTTGCTCGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACCCGTGAACCTGGCGGTACACCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACAGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //