Array 1 94491-92754 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJFX01000009.1 Escherichia coli strain 3083 NODE_9_length_164025_cov_127.672, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94490 29 100.0 32 ............................. ACATACTTTGCAGGCGATCGGCAGCTCTGGAA 94429 29 100.0 32 ............................. TTCAGGAAACCGGCGACAGCTCAGCTGATAAT 94368 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 94307 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 94246 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 94185 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 94124 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 94063 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 94002 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 93941 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 93880 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 93819 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 93758 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 93697 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 93636 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 93575 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 93514 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 93453 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 93392 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 93331 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 93270 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 93209 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 93148 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 93087 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 93026 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 92965 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 92904 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 92843 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 92782 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121134-120190 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJFX01000009.1 Escherichia coli strain 3083 NODE_9_length_164025_cov_127.672, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121133 29 100.0 32 ............................. GGGACCGCCGTAGATGAAATTAAATCATTCAG 121072 29 100.0 32 ............................. CCCTTCTCTGACAGGTTTGCGGGCCTGTACCC 121011 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 120950 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 120889 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 120828 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 120767 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 120706 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 120645 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 120584 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 120523 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 120462 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 120401 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 120340 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 120279 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 120218 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //