Array 1 28474-28790 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAJG01000022.1 Helicobacter pullorum strain NAP12B32 contig022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================ ================== 28474 26 100.0 47 .......................... GGATTAAGACCCTTTTATGTCTCTTATTGAATCTCAACTCCACATCC 28547 26 100.0 46 .......................... GGATTAAGACTTTGCATATGTCTTATGTAGATAGTGTTAAAAGAGA 28619 26 100.0 46 .......................... GGATTAAGACAGTATTAGTATGCACTTTATATCTAGGGATATTTGT 28691 26 100.0 48 .......................... GGATTAAGACCAAATCTAATTTTATTCTCATAGATTGCTATCTTATCT 28765 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ================================================ ================== 5 26 100.0 47 ATTTAACAACACGACCCGATTCAAGG # Left flank : AGTCTATGAATGCCAACTGACCAAAAAAGCACTCAAAGAAATAAAAACCAATCTCAAAAAAATACTCAATCGCAAAACCGATTCAATCCGCCTTTATCGAATCTGCAAAAACTGCAACAACAAAAGCAAGAGCATAGGCAAAGGAAAAGAACCATTTGCTCCCATAGATTTGAACTTCTAGCGCTCAAAAGAGATTTGCGAAGTTTTCATTTTTTTAAGCCCTACAACACCGATAAATACGCACCCCAAATAACTTAAAATTAGCTAAAATTTAGCAAATCATACTTTTTTTGCATTTTTAGCAAACCAATTTTTTATCCAAACCGCATAATTATCGAGATTAGCAAGCATCCAGCTTCCACAATTTTTGCCCAAAATTTGACATTTGCGAAGTTTTTACAAAAAATCTCCCACAAAGCCAAAAAATATGGGATTAAATAAAGATTTAAGTTTGCTTAATATAAAATCTCAAAATCAAACGAGCCTCGTTGTCTCCAGCT # Right flank : | # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACAACACGACCCGATTCAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 10037-9340 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAJG01000093.1 Helicobacter pullorum strain NAP12B32 contig093, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 10036 36 97.2 37 ......................G............. ATCTCCCTCCACCGCTTCTTCTCTTCTGCAGTGAAGG 9963 36 94.4 37 .....................T.............A CGATGTATCTTAACAGTCTCGTATCTAAGGCAATAGA 9890 36 100.0 37 .................................... CTAATCTCTGTAGTATTTATCACGAGGGAAAGGATCG 9817 36 100.0 36 .................................... ACTACATCGCCCTCACACTCAAACAATCCGCAAATA 9745 36 100.0 36 .................................... CTGTGTAGCTTAACGGTCTCATATCTTACGCAATAG 9673 36 97.2 39 ......................G............. TTTGCATTTGAATTCGTATTCTTTAAAATATTTGTTAGG 9598 36 100.0 41 .................................... TTTATCAACACCACATTTTTAATTTCTGAATTATGTTTTTC 9521 36 100.0 39 .................................... AATCGATAAACTTCTCCTAAAGAATAGAACTCAGAATCT 9446 36 100.0 34 .................................... AAATTTGCTTCTCCAAAAGGAGGAACATACTATG 9376 36 72.2 0 ............A...TAT.....AA..T....TTT | C [9343] ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 96.1 37 ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Left flank : GGATTAAGACTTTATAAGCCTTATATTTTAAGCGCAGGAAGA # Right flank : TCCAAAGATATTAGTATCCATCATTTAAAATTTATGATAATATAGCGTTATATTTAAGCTATACTTTTAAGGAATTCATTTGATAAAAGAACGCACTTTTGCCCCTTTATTGCCAGATTCATTTCAAATTCTAAGCCACAAAGAAAAAAAGGCTTTTTTAAAAAAAGAAACCATACTCAAGAAAAAAATCCACTATTTTGACTGGACAGCAAGCGGATTAGCCGCAAAATGTATTGAAAAACGAATAAGAAAAATACTACCATTCTACGCAAATCCACACTCAGAAAGCTCCTCACATTCCAAAATCATAGGGGAAATTTACGAAAATGCACGCAAGAATCTCAAAACATTTTTTGGGCTTGATTCTAGTTTTGCCCTCATTTCTTGCGGTTTTGGCTCAAGTGCAGCAATCAAAAAATTCCAAGAAATTATGGGAATCTACCTTCCACCCCAAACCAAAAGCAATCTCAAACTAGAAAATCTCGATAAATCTCTTTTGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Alternate repeat : ATTTAACAACACGACCCGATTCGAGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //