Array 1 3912172-3903615 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011271.1 Gemmata sp. SH-PL17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 3912171 36 94.4 40 ...................A.C.............. CGAGGGCGGGACAAAGGTCAACGTGTGCGAGCGCCGGTGG 3912095 36 97.2 35 A................................... ACGGCGTTTGCGGGCACAACGGTGATTAGTGGGAG 3912024 36 97.2 37 A................................... GCGCGCCGAGCGTCGTCACGTCGGCCCCGCCCGTGCG 3911951 36 100.0 36 .................................... CGGTCCTTGATGTATGTCATTGGGACGTGTCTCATT 3911879 36 100.0 35 .................................... TTGCCATAGCCCGATGATGCGCGCCGCCGGGGGAA 3911808 36 100.0 39 .................................... GGCGGTAACTCAAACACAAGGGAAAGTAATGCCCGCGAC 3911733 36 100.0 37 .................................... CAGTTACGGGAGCGACCACCCGGAAGCCCCCCGACTG 3911660 36 100.0 37 .................................... ACGGTGGCGGACCGGTGCCAGCGGCGCGGCCGGAAGC 3911587 36 100.0 39 .................................... GTGCAGATTACTCAGTTCAAACGCTTTGCTCTTACGATT 3911512 36 100.0 36 .................................... CGCGCTGTCGTTCGCGGACCGGTCGCACCTCGTGAA 3911440 36 100.0 36 .................................... CAGGCCCGCGGTGTTGAGAGGCCGGTTGTACGCCTT 3911368 36 100.0 40 .................................... GGCCCGACTGCCGGCGGCTGGGGCACACGCGAGTTAACCC 3911292 36 100.0 37 .................................... AAGGGCTGGCTCGCCTGATTCAGATTCAGGACGAAGT 3911219 36 100.0 37 .................................... TCCCGACGTGGAAGCGGATGTGCGTGTGCATCCTGAA 3911146 36 100.0 37 .................................... CACGAGCCCAGAGGTTGCGCGAACGGGAACCGGACCA 3911073 36 100.0 35 .................................... CACAACCCGCACACCCGAGACAGTGCGCCCAGGAA 3911002 36 100.0 36 .................................... CCGGGGCCTCGGTCCTCGACACCGCGTTCGAGCTCG 3910930 36 100.0 41 .................................... ACTCCGGTGTGCTGCCCGATCACGAGGTGCCGCGAGGTCGT 3910853 36 100.0 38 .................................... ACGACGATCATTCCCGCTGACGGTTGCCCCATTTGCTG 3910779 36 100.0 38 .................................... TCCTCCGTCGACGTGATGTTCTTCGACGGAACTGCCAC 3910705 36 100.0 36 .................................... TCCGAGTGACCCTTACGGAGAAACCTTGTGCGCTAC 3910633 36 100.0 36 .................................... GAACTGGTCGGCCGTGTGCCGGATCTCCGATGCGAT 3910561 36 100.0 36 .................................... CGAATTCGGGGCGGATTACAAGTTCCCGTTTTTCGT 3910489 36 100.0 36 .................................... GGTCGTCTCGACGGCGATCGAGGGCTGGCGGGACCA 3910417 36 100.0 36 .................................... TACCGACGTCAATCCCGTCGATCACCGCGGGGGCCA 3910345 36 100.0 36 .................................... GACCGTGCTCGCCAGCGACAAGGACGACGTTGAGGC 3910273 36 100.0 35 .................................... TCAAGCAGCAACGGCAGCAGAAGCAAGGAAAGCGA 3910202 36 100.0 36 .................................... GGCGCTCGCACAGGTCTCCGAGTGGTCCCCCGACCT 3910130 36 100.0 41 .................................... GGTATGGGGGCGCGCCACCCGGACGCGCAAAAGGCACTTGC 3910053 36 100.0 41 .................................... ATGGCGAGCACGATCCGGCACAACCGCGCCCGCGGCATTAG 3909976 36 100.0 37 .................................... TACTGTCTGTTTTGGCCCCGCCGAAGCCCATCAAGTG 3909903 36 100.0 41 .................................... GAATCGGTCAAGCGCCGGTTCCGTCTTCGTCAGTCCCCAGC 3909826 36 100.0 36 .................................... TTCTTTTTGGCCACCTTGCGTCTCCTATCGCTTAGA 3909754 36 100.0 37 .................................... GCGAGCGCGGCCGCAGTTTGGGGCGCATCCAGGCGCG 3909681 36 100.0 38 .................................... CTTGTGGACCTTGATTGGCCGCACCTCACCGAGCAGGT 3909607 36 100.0 39 .................................... GAGTCGACGTGGCGATCACGAACTGCGCCCCCTAACGAG 3909532 36 100.0 37 .................................... TGCCGGTGGTGGCGAGAACACGCGCTGGCCCCTTTCG 3909459 36 100.0 36 .................................... GGTCGCACTGGCCGGGTACGAGGAGCAGGTGCCCGT 3909387 36 100.0 35 .................................... TGGACAAACTGGGAGTGGCAGCGGAGCGGGCTTCG 3909316 36 100.0 32 .................................... TCGGCCCCTCGGTCCTGCGGCGCGAGGACGTT 3909248 36 100.0 36 .................................... GTACTCGACTTCGTGCTGTTCCAGCGCGCCGACGCG 3909176 36 100.0 37 .................................... GGAACGACGTCGTGCTCCTGGTCACCCCGGACAACCC 3909103 36 100.0 37 .................................... GCAACTCGCCCAGCTGGAGCGCGACCAGGCCGCCAAG 3909030 36 100.0 36 .................................... TGGTCGCAACCCGTACAAGCCGGAGATGGTTGCAAC 3908958 36 97.2 39 ......................G............. CAGTTCGCGCGAGGAACAGGCGTTCCGCGACGAACTGCT 3908883 36 100.0 42 .................................... CAGGTATTCCCGTCGCGTCTTCAGGTCGCGTATAGCCTCGGC 3908805 36 100.0 36 .................................... CGTCGCGCCGGGCGCCGCGGCCCCGTTCACGTCCCC 3908733 36 100.0 37 .................................... CACTGAAGTTAGGGAGGAGAGCTTACGGGTGCGAGTT 3908660 36 100.0 37 .................................... CTCAAGCAGTCGCTCGGCTGCGCAATCTCGGGTACAT 3908587 36 100.0 34 .................................... CGCCCTGCTGTTGCACCTCAGACTCGGAGCCGAG 3908517 36 100.0 38 .................................... CTGGAGGTAAGCGCGGACGTTCAGCGGCAGAGGATCAA 3908443 36 100.0 37 .................................... CCAGCGGTCGTTCTCGTTCCAGCGCACCGTGGTCCGG 3908370 36 100.0 36 .................................... CTGGGTGTGCTGGATTCGCGCACCGGAGACGACCAC 3908298 36 100.0 37 .................................... ATGCCTGGACTTCGGGCCGGTCCGGACGCAGGCGGTG 3908225 36 100.0 35 .................................... GACCTGACCGTTATGAACGTGATGGGCGGGGAGCT 3908154 36 100.0 35 .................................... ATGGACCAGAGGGTTGTCACCGGGTTCCAGTACGA 3908083 36 100.0 36 .................................... CTGTCTAGAGATGGCCGAACCCGAACCCGCCAGAGG 3908011 36 100.0 38 .................................... GGTCCGCGCCCTGACACGTCGGGAAGCCACCGCCAGCA 3907937 36 100.0 36 .................................... GACCACGCGCTTGCCACTTTCGGAACCACAGTCGGA 3907865 36 100.0 36 .................................... GATGATCGACTGCCCCGCGATCAGCTCGGCCAGCAG 3907793 36 100.0 35 .................................... TTACATCTCACAGCAGAGAACGACGTGATAATGAA 3907722 36 100.0 37 .................................... AAGACAAGGTTCTGTACGACGAAGCGGCTGGTGATTG 3907649 36 100.0 37 .................................... GGAAGGCAACAAGAAGTCCGCGGAAGCGCAACAAGCC 3907576 36 100.0 36 .................................... CTGTCCCTGTGTATGTGCTTAGCTCTACGGTAGGAA 3907504 36 100.0 36 .................................... CGAACTAATTGAAGAGAGTTGTAAGGAATGGCTCAA 3907432 36 100.0 36 .................................... GCATGCCGAGCAGATGTCGATTATGAGGAATGGCTG 3907360 36 100.0 35 .................................... CCCCCACTATCAACCACTTCCCATCCTATATAGTC 3907289 36 100.0 38 .................................... GCCCATCCGTCTTGAATGAGGGTGATGGTGGAGGAACC 3907215 36 100.0 37 .................................... AGACGAATGTTTCACCTGATGGGCTTCGGCGGGGCCA 3907142 36 100.0 40 .................................... AGCGCAAGAAGGAGATAGAGAAACAGCAGAAGGAGTTGGA 3907066 36 100.0 36 .................................... GTAGCATTGACAAAGAGCTAGACGACCGTGGGTACG 3906994 36 100.0 38 .................................... GAGTGCGGCCCGGCATGTCGATGTCATCACGGGCCATC 3906920 35 97.2 38 ...............-.................... GCAACCTGGGAGACTGGGGACAGTTCGACCAGATTGCG 3906847 36 100.0 36 .................................... TACGTTCCAGCCGACCATAGGCAGCGCCCCGTGCTC 3906775 36 100.0 36 .................................... GCGGCCCGGCATGTCGATGTCATCACGGGCCATCGC 3906703 36 100.0 37 .................................... CTAGTCTGGGCATGATGCCCTTCCGAGCGAGAAGGGG 3906630 36 100.0 38 .................................... CTATCCTCGATGTGAGAAAGGTTAGAGGAGGTTCAGCA 3906556 36 100.0 38 .................................... TCAAAGAAGACTTGTAAGAACGAAGCGGCACCAAACAG 3906482 36 100.0 37 .................................... GCAACACGTTATGGGCACTCGCCGAAGACCAAAACGA 3906409 36 100.0 34 .................................... GCGATCGGGTCACGCTCGAAGAACTCGCCGAAAA 3906339 36 100.0 36 .................................... CCTGAAAGACGTGGACTGAAAAGAACTGGCCGGAAG 3906267 36 100.0 35 .................................... TTGAGGGGCGTGCCGAGATTCTCGAAAGTCGCGCC 3906196 36 100.0 36 .................................... CAAGCCGGCCGAACTGGAACAGACCTACAAGACCAT 3906124 36 100.0 36 .................................... CCCGAGCAGCTCCTTCGACTGGTCCTCGGTCGGCGC 3906052 36 100.0 36 .................................... GCACCGTCTTCGTCGCGGTGTACCCGTCCGAGATCA 3905980 36 100.0 36 .................................... CCGGCCCCGGCCGTCGTCCGAGGAGAAGATCCCGAC 3905908 36 100.0 40 .................................... CTGGATGCCGCCGTACGGGACGTGGTGGGACTGCCGGGTC 3905832 36 100.0 37 .................................... GAAGACCCACGTTTACCACTTCACGCACCGCGACATG 3905759 36 100.0 41 .................................... GTGAGGACGGCGAGGTAACGGAGAGCGAGAACCGCGACGGG 3905682 36 100.0 36 .................................... GCCGCCAACCTTAACGCCCTGCCCTTCTTTGGCGGG 3905610 36 100.0 36 .................................... TCAATGTAAATAGGAACCGTCAAACATGGTAGGACC 3905538 36 100.0 38 .................................... TACCTTTATTCTCTTTATCCGCTTGTGGGGAAGGTTAA 3905464 36 100.0 35 .................................... AACGAACCGACGGCACCCACGCCGATGCCCGCGAG 3905393 36 100.0 35 .................................... TTTTACTTTTACTCTGTTAGTCAGTTCCCCCCAAA 3905322 36 100.0 42 .................................... GTTGCTGATGTTTTTCGAAAAGAAGAAAAAATTAAAGTAGAT 3905244 36 100.0 36 .................................... TTGGATCAAGAGTTAGAATTCATCCAGTTCCATTTA 3905172 36 100.0 36 .................................... AAACTAAACGGGAGCCGATCCTCACTCGGTGCACCG 3905100 36 100.0 36 .................................... TCGATTCAGATGTTATGTCCACTACAACCCGATCTG 3905028 36 100.0 38 .................................... CCCGCGTCGCGAGCCGGATCTTGTGCGGCACCGTGTAC 3904954 36 100.0 36 .................................... ACCGCGCCTAGCCCCGTTTGGGGAACGCTGAGTAGA 3904882 36 100.0 35 .................................... GTGATTGCAGCACCAGGGCCGAGAGTTGAACTCGG 3904811 36 100.0 37 .................................... ACGAGGGTAATGAGTGCGGCGAGCAGCCTTTCCCGGT 3904738 36 100.0 36 .................................... CTCGTTCACCTCGCGACCGGTTCCAAGGTCGAAGCT 3904666 36 100.0 37 .................................... TTGTCTTCTCGCCGCTCCCAAAATACCGTTCGCACCT 3904593 36 100.0 38 .................................... GCGGGTCCGAGGCGCTCGCGGACCACATCGAGTACCCA 3904519 36 100.0 37 .................................... CATCTTTTGCAATATAGACCCTAGCAGGTCTAGGAGA 3904446 36 100.0 37 .................................... CAAAAATTTGAACAGAGACTACATCAATGCTGCTTAT 3904373 36 100.0 35 .................................... TCGGTGCCGTTCACCGGGTTCATCAAACACGCGAA 3904302 36 100.0 37 .................................... ACGTTCAGTTTGTGGGGTCTTGCAGACGGATAGACGT 3904229 36 100.0 39 .................................... TGCGACCATGCGCGGGCACGTTAACGTGGACGCCACGGA 3904154 36 100.0 34 .................................... CTGGATACTGGGGTGCGAATCGAGCGTTGATACC 3904084 36 100.0 36 .................................... GCGGAGAAACTCGCCGCGCTCGACCGGAAGAAGGCG 3904012 36 100.0 36 .................................... TTCAGTCCGCGGCAACAGTTAGAAATGCACATGCTC 3903940 36 100.0 38 .................................... CCGCTCGGGAAGATGAGCGATTTGTCCGTGGCGTCCGC 3903866 36 100.0 35 .................................... CGCAACTGAATGCCACTCTGGATGTCGGTACCACT 3903795 36 100.0 36 .................................... CATTCAGCGCATCATGCTCGCGCTGCGGGTGGCGGC 3903723 36 100.0 37 .................................... GAGACATCCACACGCACAAATCGCCCAGATGGTTGCG 3903650 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 118 36 99.9 37 GCTTCAATTCGGCCCCAGATGTATCTGGGGAGAGAC # Left flank : GGGTTGTGGATCGCGGTCCCGGCCGAAGCGTGGGTCGAGATCGGCGTATGGTCGGTCGGCCGGATGGCCGAATGGCTGGTGGGGTTGGCTCGAGGTGCGAACCTGGGGCGATATCGGAAAGCCACGCGGGGACCGAAGAAACCGCGCCCACCCCGCACCCGGTTCCCCGACGCCAAACACGTCGCCACATCACGACTACTCAACGATGAACAGACGTGATGCATTGAAAGGGATGCCCTGGTGCGGCTACCCGCGTACGCCCCGGACCTGAACCCGGTCGAGGTCGTGTGGTCCTGGCTCAAGTGGGGTCGGCTGGTCAACTTCGTCCCCGACCACCTGACCGAGTTGGACGACTGGGCGGTCGAATACCTGGTCCAGTTGAAGTTCGACCCGAAGTTGTTGAGGGCGTTATGGGAGCGGTCTGACCTGCCGTTCCCGACACCTAGAATCAAACAACCCTGACTACCTGCGATTCAGTAGCGTTGTCGTGAACCGGCCCG # Right flank : GGTCTTCGTCGGAACCCTTGTTGCCGCAACGAAATGGAGCTTCCCCTGCGAGCGGTGGCGGTTTGGGGAGGCGGCGAGTCGTTGCGTGGCCAAGGGGGTAGTTCCAAGTCGTGTTGAGATTGGGAGTTGCGGCTCGCGAGCGGCGACGAGCCGCAACTTCAATGGTATGTTCTGCGTTGTCAAAGACCTACGGCGCAAAGCCGGCACGCGGCCGGATTCATCACCGGTGCCCTCGGGGCATACCAAACGTCGGAACGCCTCCACAGTCACGGACTCGGGTTGCTGTTTCGACGGTCTGAGGATGGAGGCGGTGGTGTCTGATGTCAAGCGGGAACTCCGTAACGCCGGGTCCAAATTTTGCAGTTTTTGTAGCATTTTCAGCCAAATCCCACCGTGAAAACTCCCATTCCGCGGTACCGACCCGCCCCAATTGCTAACGGACCGCTCACAGGATGCGAAAATCGCACGCGGACGTGGTAACGCGGATAGCGCGGCGTGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATTCGGCCCCAGATGTATCTGGGGAGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.50,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 7198507-7198904 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011271.1 Gemmata sp. SH-PL17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 7198507 36 100.0 36 .................................... CCGTTTGAAGGCACCGTTTACAAGCTCGGTCAGCCG 7198579 36 100.0 35 .................................... CGGTCTTCGCATCGACCACTTCGAGGGTCAGTTTC 7198650 36 100.0 37 .................................... GCTCAAGCGCTCGGTGTTGGACCCGAAGCATTCTTGA 7198723 35 83.3 36 .........G..T....-A.C.C............. CGCGTGGTAATCGTGGATGATCGCCGGGGCAGCAAG 7198794 36 86.1 39 .........C..T....GC.G............... ATGATCGAGCCGGACAAGTCGCGGTTCCAGATGGTTGGG 7198869 36 83.3 0 .........C..C..G.G..G..............T | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 92.1 37 GTATCTCCGTGGGGCAACTCACGGCCGAATTGAAGC # Left flank : TCACCGTGCAAAACCCATCAAATATGGATTGACACCAGTCATATATGATGGGTATGCTGCATCCACGGTGGCTCGGTGGTGTCTACCACTCGCCGCAATTGGCTGTTACCCGTTGCGACGAATCCTCAACTCCCTCGGGACTCGCACCCATGTTAACTTCCTTCACCGAAACGGTCAACGCGGCCCACCCCGGTCCCCACGCTGTCATTTGCGACGGGGTGCTGTTGTTCCAGTATCCCACCTACCTTGAAGCCGCGGATCGGGCGTGCGACCTCGAATCGGTCGGCTGCACCGCGGTTGTGGTGCCTGTCGATCTGCATAACTGACATTTGATTCGCATCCGATCGCGATATATTTTGTATCGCATCGCGAGTGCGTCAGTGGTGAACGGGACATAGCTGCGAAAGGTCTTTGAAAACGTGGGTTAGTGCAGCGTGTGGGCGGCCTGCTCGCGCAATGGAGCGGAAGTGTAGATCGGACCAAGTGATTGAGTGTTCGCA # Right flank : TTGCGTTTACAGAATGTACCCCGTTGGGTCGTAGTACACCCCTCCGCGGCGATCACCGCGGCCAAATTGAATAGACGGCTAGGTTGCCCCTTGTGCCCGGCCGTCGGGCAGAGGTCGGAGCCGCTCCAGGGTGTGGCGCGCTTCGACAGACGTGGTCGCGACCGCCCGGCCGCAGGGTACTCACGCCTTACCCCATGACAGCGGCTACTGATTCGTTCGAGTTTGCGACTCTTACTGGTGTCGCCTAACGCCCCTGTCACCGGGCGGGCGATGAAGCCGCGGACATTAGAGCCGAGGGGGGCGAGGACTGCAAACCCCAACACAGCATTAGCGTCGTCGAATGTGTTCTTCGGCCTGTAGGATGCGGGCGACGATTGCGACGAAGCACGCCAGTCCCGCGAAGGCACTGGCCCAAACCGCGCCCTGTGTGATCGCTACAGCCGCGAGCATGGCCGCGGCACCGAGCGCGAACCATTTCGCAAGGTTGAAGAACCCGGCTG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCCGTGGGGCAACTCACGGCCGAATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //