Array 1 198415-198712 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPDH01000001.1 Listeria newyorkensis strain F1604011-044 NODE_1_length_372083_cov_35.3407, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 198415 35 100.0 31 ................................... TGAGAGAGTTACCTTTCTGCTAAATACAAAG 198481 35 100.0 31 ................................... GAAAAACATGCCTGTCCCGTTTTGTTTTGTG 198547 35 97.1 31 .......................A........... ACTTGTAGACCGTCTCAATCGATTATTCTAG 198613 35 91.4 30 ......C......T....C................ ATATTTTTTGTAACGGCTTGCAATCATTTG 198678 35 82.9 0 ...............A..C.......T.T.T...A | ========== ====== ====== ====== =================================== =============================== ================== 5 35 94.3 31 TTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : AGAAATTATGTATATCAGTAGTGACGCGTATTTAGAGAAAACCGAGCAGGATGAGGAAGAAGTTTTCTTTGAAGCCTGCGATCGTTTGGCTCTAACCGCCGAAGAGAAAGCCGAGATTCATGCCGATATTGTATTACCGGAAGCTTTAGAATGGGACGAAGACGATGATTTAGAAATTATTTTCCCTAAAATTGCAGCCGCTCTGAAATAGGCCATTTATTTAGCGTTTTTTCGCAGGACAAAAAAGCACCATAAACCGTTTACTATCAACGATTTATGGTGCTTCTTCATTTCCTAAAAACGGAGAAACGGGGATTCTGATTGTTGGGTGAAATGTACTCATGGTGCTGGTTTTAACGCTTATAATGTTGGCTGTGTGGCAAATAATTTTAAGAAGATGGCGAGAGATTTTGTTCGTCATCTTCTTTGTTGTGCGCTGACTTTTTCTCTTCACAGCCATTACAATTGAAAATGTTATTCCTCACTTATCCACAGCAGGT # Right flank : AGTAACATCATATTACGTCCTCTTGTAACTTCCAATTTCATTTTGAGATTGACTGTAACATCCTACATCACATTTCTAACAGTCTCTTCACTATACCACAATACTCTTCTGAAACTTGATTTGTTTCTATATAACCACCATCGATTTTTTTCCCACCCAGATGTCTCAATTTTTTTGGCTCTAAGCTTTTTATCACCAACCTATGTTTATTTTCTTTCAAGTTAGCAAATACGACGCTCATACCATGTCTATCTAAAATATCGATTAATGACTTGGAAACGGCATTCTTTAATTTACGATCATACTTAAAAATTTCTCTCAACCTCTCGGATAAATACAGCAACGTGCACTCAGATTTGAGTGATAAATAATTTAAATGCGCTATATGATTCCTTGCATTTTTCTCAGAAACAAACAGTCCTTCTTTTTTCAAGAATGTATCCAGCTTTTTAATACTTTTTAGTCTATTATCGCCCCAATATTCCACTCTCTCAGTTATT # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 202198-202495 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPDH01000001.1 Listeria newyorkensis strain F1604011-044 NODE_1_length_372083_cov_35.3407, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 202198 36 100.0 30 .................................... TTACTTTGAGCGCGGCGACCGGCTTGCTAG 202264 36 97.2 30 ...........................T........ GGCGTAACGCGCCACCATTTAGAAGCTTTA 202330 36 100.0 29 .................................... TGAAAAAAGCTATACCATATCGACAAGTA 202395 36 100.0 30 .................................... AAGCATTACGGCGTATCACGCCACCAATTA 202461 35 86.1 0 ................A..........A.A.-.T.. | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.7 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : TGTTATTTCTTTATTAATCGCTTTATTAATTGCCTGCTTACGCCTATTCTTTTCTTTTTCATCGGGTTTTCTCACAGTTTTATTGAGGATACTCTTATAAAATGACTCTTTTTTCTTATCAAATATAATTTCTGTTGTCTTATTTCCATCGATACCTTCATAACCCAGTTGACCTTCCTTGCTTGTCCTCTCCATTACGATAGTTCTTCCATCTACTCTCATCTTTGTGATTTTCATCTGTCTACTCAGCTCCATTTGGTTTTATAGTCATGTACCTAATGCTTCATTAATGCTGAAAATTTAATTGGTTTCTTCATGCGTGTATGAAATTTCTATTATTTATCAATATATTCATTATACAAGAAGGCACGTTGCAAGACAACATTCACTGATGGTTCATCTACAATACTAAGAATTGAATAAAGCCATAAAAACCAATAATCCAGCTCTTTGGATCACAGTTTTTATGGCTTTATTTCGAATACTTATCCACAAAAGAG # Right flank : CACTTGCAACAACATAACTATACCAGATTATTAATGGATCTGCATCTTGACAGATTACCAAAACATAATTATTTTTTCATAAATTAAGAGACAACTCAGAATACAGAATTGCCTCTACATGTCTAATTTTCCCACTGTCAATTCCTCTGCGCATAATATCTCCACCTTAAACCTTCATTAATAAGATTCTATACTTATTATCTCCCGTATGTCATCAATTTCTAGAGCATCTGCAATCCTTTCAATATGCCGCAATGAAATTCTCTCATGCTTATTATTTGATAACTTATTAATAATCGAAGGCTCAATATCAGATAACCGTGCAAGTTCTCGTAAAGATATATTTCTGCTCTCCACCAGATTCTTCAAGTTAATAATTACATATCTACTCAACATGCTCATCCCTTTCTGTTGTTTATAAGAACATCATATAGTATAATGTGTAATCATATGGTGTCGCTAAAGACATCAGAAAGGAGTTATTAATGAAAAATTTAGAT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //