Array 1 37870-39157 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWZN01000015.1 Pseudomonas aeruginosa strain SMC1596 IPC1618_15.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37870 28 100.0 32 ............................ ATGGAGCTGGGCAACGTCGTCAGCACCCAGGT 37930 28 100.0 32 ............................ TGGGTCGGCTACTGCTTCCGGGTGCTTGAGTA 37990 28 100.0 32 ............................ TATGCCAGCGGCAACAGCACGCGAGGCTTGAT 38050 28 100.0 32 ............................ TGCAAGTGACCGCAGAGCGGGAGCGTGCTGAC 38110 28 100.0 32 ............................ ACTGAAAGAACTTCACAATGCCTGATACAAGC 38170 28 100.0 32 ............................ AGAGGTTGGACCCCGGATAGAGGTAAATCGCG 38230 28 100.0 32 ............................ TCCAGGGGATCGGGCCTGCGTTTGGGAACCCG 38290 28 100.0 32 ............................ CAGGCGTGCGTAGATCCAGGCGAACTTCGCCC 38350 28 100.0 32 ............................ TTCTCCGGGCGCGCCCTGGAGCCATCATTGCC 38410 28 100.0 32 ............................ ACCATAGGGCCGAATGAAGTTGATGTGCTTGC 38470 28 100.0 32 ............................ ATACAGGCCGTGACGGCCAACAACCCTACTGG 38530 28 100.0 32 ............................ TGACGCGATGCCTCATGCACGCCACGCGGCAG 38590 28 100.0 32 ............................ CTCGTACGAGACCGAGCGGATCACCATGCCTG 38650 28 100.0 32 ............................ TGTAGCCCCTCACCGGGTAGTCCGAGACTATG 38710 28 100.0 32 ............................ CGAAACCGAAACCGCCGCGACCCAGGAGCGCA 38770 28 100.0 32 ............................ TTTCGGGACTGCGGTCTGTACGCGGATTGAAT 38830 28 96.4 32 ..........A................. TACGATGCAGCCAAGGGCCGGCTCGCCCAAAT 38890 28 100.0 32 ............................ AAAGTAAAAGTCGAAGCCAGACTTCATACAGC 38950 28 100.0 32 ............................ TCGTAATCATTGAAGCCCCGGGCAAGCTGAAA 39010 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 39070 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 39130 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48855-47685 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWZN01000015.1 Pseudomonas aeruginosa strain SMC1596 IPC1618_15.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48854 28 100.0 32 ............................ GTCACTGAAACAAGACCGGCATGTTGTGACGA 48794 28 100.0 32 ............................ TGATAGATTACGGAGCCGCATACGTACTGGCC 48734 28 100.0 32 ............................ GAACACGTCGCCGACCCACGGCGTGCCCTTTT 48674 28 100.0 32 ............................ TCTTCCCCCCGAACCCGCAAAGCCCACTTTGC 48614 28 100.0 32 ............................ AGAACAATGGGAGCCGTGACGACCAGCATGGT 48554 28 100.0 32 ............................ GTTCGGTTAGATCTGGCGATCATCAGCCACCT 48494 28 100.0 32 ............................ ATTCGAAGAGCGGACGTCCGGCGACTTCTGCC 48434 28 100.0 33 ............................ GCAGAGCGGAGCCTTGCCCCAGCCTTTCTTGCC 48373 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 48313 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 48253 28 100.0 32 ............................ TGCACAAAAACACTGCGCGACCAGACGACATG 48193 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 48133 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 48073 28 100.0 32 ............................ GCGATCCACGGCATCAGCCACGAACAGGCGAT 48013 28 100.0 32 ............................ AACAGCGCGGGAGTGGCGCGCTCGATCGGCAA 47953 28 100.0 33 ............................ AGGGACGTCGCGGGCCAGACCTACGAACTGTTT 47892 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 47832 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 47772 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 47712 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCAAAGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //