Array 1 755540-757157 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054509.1 Flavobacterium columnare strain F9R78 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 755540 36 97.2 30 ......A............................. ATTTTAAAAAGACAGATTAAATCGGCTGGG T,TATAA [755541,755549] 755612 36 100.0 30 .................................... TGACTAAAAAAGCCATTGCAAGCGCTACAG 755678 36 100.0 29 .................................... CGATTTGGTTACACGAAGGTATTTTCGAG 755743 36 100.0 29 .................................... TTTTAAATTTGGCGGTTGACCATAGATCG 755808 36 100.0 29 .................................... ATTGTAAGGTATTTCAAGTGGACACCGCA 755873 36 100.0 30 .................................... ATTATATTTGTGTTACATGGTGTAGTTAAA 755939 36 100.0 30 .................................... TTCAGAAGGAATTTAGAAGCTTCTGTTCCT 756005 36 100.0 30 .................................... TATAAAGCAAAACTAATTGATTGATAAACT 756071 36 100.0 30 .................................... GAAAGCTATGCTGCCATATAAACAGGATGG 756137 36 100.0 30 .................................... TTTGAAATAATTTTTAATTTTATAACATTA 756203 36 100.0 30 .................................... TCTACAAATACCTGAATTAACTCTAAACTG 756269 36 100.0 30 .................................... AAAATAAGAAGAGATAGTAACAGAAACAAA 756335 36 100.0 30 .................................... GCATTTCAAGATAGTAGAGAATTTAATCAG 756401 36 100.0 30 .................................... AACTTGCAAACAATACCAGACTATCAAAAA 756467 36 100.0 29 .................................... CTTATTTTTCAAGTCCGTCGGGGTCGATG 756532 36 100.0 30 .................................... GATGCTGAAGAAAAACACAAAAAAGAACAA 756598 36 100.0 30 .................................... TTATAACCTTTTTACTATTTCATTTAGCTT 756664 36 100.0 30 .................................... AGAATTTCGGTTGGATACTCAAAGCAATTG 756730 36 100.0 29 .................................... GGTTATAAAATTGATGAAGAAATAGGCTA 756795 36 100.0 30 .................................... CGACCGCAAACATACGATAGTTACTTTATA 756861 36 100.0 29 .................................... GTTATTCAAGATAATTGCAACATAGGGTA 756926 36 100.0 29 .................................... TACTCATTCTCACTAAAAGAAATAGCTTA 756991 36 100.0 30 .................................... ATGTTCTATCGGCGTAAAATAAGTTAGCAG 757057 36 100.0 29 .................................... TTAATTAAATCACAAAAAATGACAAGAGA 757122 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.9 30 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGAATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : TAGCTAACAGCTTAGTTCTTAAATATCAAAGCATTAAGCCGAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1284414-1285498 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054509.1 Flavobacterium columnare strain F9R78 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1284414 36 100.0 30 .................................... TATTCTAATGGATCAATTAAAAAAGCAAGA 1284480 36 100.0 30 .................................... TCGAGAGGTGTTAATGAAACGAACATAGTT 1284546 36 100.0 29 .................................... AATTACTGCTAAATGATACAATGTGTTTG 1284611 36 100.0 30 .................................... GGTAAATAATTTATCTCTAGATTATAGTAT 1284677 36 100.0 30 .................................... GCTATGCTACTTATACAGATGCACAACATC 1284743 36 100.0 30 .................................... TGGTTTTCCGTAATGATATAAATAGAATTT 1284809 36 100.0 29 .................................... CGGTTTGTCTGCATTTGAAACTCCAGCAC 1284874 36 100.0 29 .................................... TCGCGGGAAAAGTTGAAAAAGGATTAAAC 1284939 36 100.0 29 .................................... GTTTTAACCAAACATTTGCCAGGGCATAA 1285004 36 100.0 30 .................................... AGTGCGGAAAGCCCGGCTTTAGAACGCCCA 1285070 36 100.0 30 .................................... GGAGACATCCATCCTCTATCTAAACGTAAA 1285136 36 100.0 30 .................................... AATGAAGAAGTTTATTTAGAAAACCAAAGA 1285202 36 100.0 29 .................................... CAATCTCAAAGTATAATTGATAAATAGGC 1285267 36 100.0 29 .................................... TTCTAGCTTTGGCCACCTCATCTTTTGAA 1285332 36 100.0 29 .................................... TTGTCGAACTTTTCTTTTTTATAATGCAA 1285397 36 100.0 30 .................................... CATATTCTTCTTCAAAGTGATGTTTGTAAT 1285463 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : GAGTACGCAAATACATCCAGCCGATTTTGAAAGAGAGGGCAATCCAAATTTTAAAAAATATTTAGCCCATTCTATTTTAGAAAACGAAGATGATCTTGATAAACTGCCTGAAAAAGCAGAAGCAATGAGGGAACTGGATGAAACAATTACTAATCCAATCATTAAAAAAGCGATTGTGTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCACCTAAATTTATTTACGATTTAGCGAATCGTTTTGTCCCAAAAAAAGAAGAAGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTATAAAGAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : CACCCTTAGAATCTTCACCGTACCAATACCTGTTAGCCCTTATTTTGAAGGAGGGACGAGCGTTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGTGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTCTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //