Array 1 101359-104935 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRLA01000003.1 Faecalibacterium prausnitzii strain APC942/18-1 NODE_3_length_327769_cov_238.502, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================================================================================================================================================================================================== ================== 101359 33 97.0 35 ...........T..................... AATAATCCAGTGCTCATTTTTTGATCTCCTTCGGT 101427 33 97.0 35 ...........T..................... ATTCCATTTTACATTCCTATGCACTTAGGAGACCC 101495 33 97.0 34 ...........T..................... AAGACAGTTGCAACGCGATTGATGCCGGAAGAAT 101562 33 97.0 33 ...........T..................... CGATCTGGAAAACAATGTGTATGAGACGAACGA 101628 33 97.0 36 ...........T..................... CTGCGTCTGCGGCCGGAGCATACCGAAGCTCACGTG 101697 33 97.0 35 ...........T..................... CGCCTCCGGTGCGCTGTTGCCGTCGTACAGCGTCG 101765 33 97.0 33 ...........T..................... TGCTCCGATTTAATGCACCGGACCGCATACCGG 101831 33 97.0 35 ...........T..................... AGCCGCTCTATCGGGACGTTCCGCAGCCCGGACCG 101899 33 97.0 35 ...........T..................... ATAAGCAGCCTGCGGGTCAGGGAACAGACCGGGCG 101967 33 97.0 35 ...........T..................... TCGCTACCAGTGGCACTAGGCATGGCAGTCAGGCT 102035 33 97.0 35 ...........T..................... TCTTGTGTCTCCTTCGATAACGCCCTTGCATCTGT 102103 33 97.0 33 ...........T..................... CTCAGTCGTACGGCTCAGTGAGCAAGAGCTGAG 102169 33 97.0 36 ...........T..................... TTTTCCAGGCCGCACTCCACCATCTTGCTGCTGGCC 102238 33 100.0 34 ................................. ACAAATGAAACGGGTAAAAAATTAGTTGGAAATG 102305 33 100.0 34 ................................. AATCAGGATAACACCCTTGCAGACACGCTTATCC 102372 33 100.0 35 ................................. GACGAACGCAACGGCAATTTCGAGGAAGCAAAGGA 102440 33 100.0 34 ................................. CTCCTTGTCATGTAGCGCGTGATAAATCGCGTCC 102507 33 100.0 34 ................................. CCGTTCTTCCCGAAAGAAACGGCAGACCAGTTGG 102574 33 100.0 36 ................................. ATCCACCCGGCGGGCATAGGCCGCGCTGGCAAGAGC 102643 33 100.0 35 ................................. GTAAGAAGAAGCTCGGTGCAATCAAAATCGGAAAG 102711 33 100.0 35 ................................. CGTCATCAGAGTAGCGGACGGCAAAGTAGCCGCCG 102779 33 100.0 34 ................................. ATCCAGCTCAGGCGCTCAGTGTTGATACCTGCAT 102846 33 97.0 33 ..............A.................. ACCTCATAGCCTTTGCCAAGCGTCGCGTCGCAA 102912 33 100.0 33 ................................. GGGTCAAACTTGAGGCCGTCCCGGTAGCCCTTC 102978 33 100.0 34 ................................. AGCGGTGCAGGCTCAACCACGGTGGGAGTGCTGG 103045 33 100.0 33 ................................. AGCGAGCTTTACAGCATCCCGGCATGAACGCCG 103111 33 100.0 34 ................................. CTGCTGGCTCGGCTCAACGCCCAGCGGCATCCCA 103178 33 100.0 33 ................................. TTTGCGTTGTACCGCGCCGGTCCTGCGACGGCG 103244 33 100.0 34 ................................. CCCCCAAGCGTGTGGTAGCTGCGATAGAGGTACT 103311 33 100.0 34 ................................. TGTGCGCTGCGCCGCTCCGGTGCAGGCAGGTCAA 103378 33 100.0 34 ................................. ACCCACGGACGGGAGCTCACATGGCAACCCTCAG 103445 33 100.0 34 ................................. AGGCTGTTGTAGTCGCTGAATACGCCGCTCCGGC 103512 33 100.0 34 ................................. TACTCTCGTCGTGGATGCAATACCTACAATTTTT 103579 33 100.0 34 ................................. TGCCTCGTCACGGGTCAGATGCGGATGCGGCATC 103646 33 100.0 35 ................................. ATGTACCCGTTAGCAAAGGCCACCAGGCCGTTAGT 103714 33 100.0 36 ................................. ATATTATCATTGATCGTATGAAGAGATCCAGAAATA 103783 33 100.0 33 ................................. ACGACAACAGCATACTTTCGCACACCACGGCGG 103849 33 100.0 34 ................................. TCGTGGTGGCCTTGCCCATATCCAGTGCTGCTTG 103916 33 100.0 34 ................................. TCGCTGGCCAGAGGGCAGCCATGCGCACTGCATC 103983 33 100.0 35 ................................. ATCAGACCGAAAGCATCCAACCAGTCGAAGAAGTC 104051 33 100.0 35 ................................. CGACCTCGAAGCTGCAGGCAGTTTACCGCAAGTTT 104119 33 100.0 35 ................................. ACGCTGTATTTACGGTTGGATAGCTGGCTGATTTG 104187 33 100.0 34 ................................. TGACGGCAAGACCCAGCGCGTGGATGACCTCTTT 104254 33 100.0 35 ................................. ATGAGAAGCTGGGCATCAAGGATAAGTATACCGAT 104322 33 100.0 36 ................................. TTCGATCTTCTCGCGCAGATGGAACGGCTCATAGGC 104391 33 100.0 34 ................................. CGGCCAGCCTGACCCTCCAGACCCGCCGCAGAAC 104458 33 100.0 35 ................................. GGCAAGAAGTTTGGCTTCGCACTGGATGTTCTCAC 104526 33 97.0 34 ......T.......................... ACCGCATAACCCCACTGGAAAACGCCATCACGCA 104593 33 87.9 211 ......................CAAG....... CGACACAAAAATATGGTAAACTTTTATTAAGTTGTTGCCATGCGTTCTCTAAGGAACCGAGTATTTTGACCTACAATTCCGTCTCTTAAAGATGTTGGTTGAAATCAATTTGTGTTCCCCGGTGCATTCTTCGACTTGAAGTCGCTCCTATTTGAGGGGTGTGGATAAAATAACATAATAATCATATCGCGGTTCTCAAAGGCGTAACCAA 104837 33 81.8 33 .A..T....T..A.C........A......... TGTCACAACCACGCCGGTCTTTTCAGCATCAAG 104903 33 78.8 0 ..T.......C...AA....TAC.......... | ========== ====== ====== ====== ================================= =================================================================================================================================================================================================================== ================== 51 33 98.1 38 GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Left flank : CATTTTTCTGGAAGTGAGGGATGTGTATGCTGGTCCTTATCACCTACGACGTCCATACCGAAACTCCTGCCGGGCGCAAACGTCTGCGCAAAGTCGCCAAGCGCTGTGTGGACCACGGCCAGCGGGTGCAGAACTCCGTGTTCGAGTGTCTGCTGGATGCCGCGCAGTATGCCGTTCTCAAGGCGGAGCTGACGTCTCTCATCGACCCTGCGCTGGACAGTCTGCGCTTCTACCAGCTGGGCAACAACTATAAGAGCAAGGTGGAGCATATCGGCGTTCATCCGCCCTTCGAGCAGGACGGCCTGCTGTTGTTCTGAGTTTCCCGCCCCGGTGCGAAGGACGAGTTCTCAGCATTTTTCCGGCACCTTCGCACCGGATTTTTGTGTCATTTTGCATGATTTGGATAGCTCTTTGACCCGTTGTAAATCAAGGCTCTTCTAAATTCGTGCAGAATGTTGTATAATTTGTTTGAAAATAGAGATTTTGTCTCTGTTTTTGCT # Right flank : TCAGTTTCCACCTCGAATCGGGCATCGCCACAATTTTTCCAAAAAGGAGTTTTCCATGCATACCGTTCCCCTTACCCATCAGCTCGTCACCATTCAGGACGACTTTGACCTCGACAAGATCATCGAGAGCGGCCAGTGCTTCCGGCCGCAGAAACTGGCCGACGGGCGCTACCGTTTTCTTTCCGGCGGCGCACTCCTTTATCTGACTCCGCTGGGCGCTGGGCAATACGACGCTGCATGGTATGGCTCAGATTGGGAGTGCTGGGCCAACTACTTTGATTTGGGCCGGAACTATGCCGCGCTGCGGTGCAGCTTGGCGGGACAGAGCAGCTATCTGGACAAATCGCTCGAATTTGGGCAGGGCATCCGAATCCTGCATCAGGACCCATGGGAAATGCTCATCACCTTTCTTATCTCCCAGCGCAAGAGCATTCCGGCCATCCGCACCGCCGTAGAACGTCTTGCCCGGTGCTGCGGCGAACCGCTCAGTGCCGAAGGCG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Alternate repeat : GTCGCCCTCCTTGCGGAGGGCGTGGATAGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCTCCACACGGAGGGCGTGGATAGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 159141-159892 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRLA01000007.1 Faecalibacterium prausnitzii strain APC942/18-1 NODE_7_length_192442_cov_254.54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 159141 32 100.0 33 ................................ GCGAGAGCATAGAAGATGAGCTGTCCGACCTCG 159206 32 100.0 35 ................................ TCCCCGGTGCAGCCCCGGCGGATGGTCGGCAGAAT 159273 32 96.9 33 .......T........................ AGAACTGCAGTATGGATGTCGTTCACGCGGTAG 159338 32 100.0 33 ................................ ATCAAAGATCTTTCTAAACTCCTCGATATCGTA 159403 32 100.0 34 ................................ GAGCAAGTGCTTTCTGTTCGTCGTAAGTCATCAC 159469 32 100.0 33 ................................ ATCAAAGATCTTTCTAAACTCCTCGATATCGTA 159534 32 100.0 34 ................................ GAGCAAGTGCTTTCTGTTCGTCGTAAGTCATCAC 159600 32 100.0 33 ................................ ATCAAAGATCTTTCTAAACTCCTCGATATCGTA 159665 32 93.8 33 ...............T...............T TTCACTTTCTTGATCTGCTTCTTTTCGGCACGG 159730 32 96.9 33 ....................A........... GTCACAGCTTGCTGCTTGTCCAGTTTGGCGTCC 159795 32 100.0 34 ................................ GACCTTTGCCATTGCCTTCTTGTCCTTGCGGCTC 159861 32 93.8 0 ........................G...A... | ========== ====== ====== ====== ================================ =================================== ================== 12 32 98.4 34 ATTGCAGCTTATCCCCGCAAGGGGACGATAAC # Left flank : CGGCAAGGTGGTCGATCTCGTCTTCCCTGCCATCGACCCCGCCGCCGACGAGGCCGCACTGGACTCCCTTGCCACGGTATACGCCGACCACATCCTGCACCTTAACCCGGACGCCGTGCTCTGTCAGGGCGAGTGCACCTTTGTGTACCGGGTAGTCCAGCGTCTGGAAGCTGCGGGCATCCCCACGCTGGCCGCCTGCTCCCGCCGCAAGAGTCAGGAGACCACCTACCCGGACGGCAGCACCCTGAAGCGCAGCATTTTTGTGTTTGCCGGGTTCCGGCGATATGGCCCGATGCCCTGAAGTCAACAGTTCGGGGTGCGAACCTCCTTTTCTACCGCCTAGTTTTCCCCAATCTGGCACAGAGTTCGCACCACCAATTTCCAACTTTTATTCGGAAATATCTTTTATTTTTGCAGTCAATGTGCTATATTTATCTTGTGATTGCAGAACACACCTTAAAAAACGCAGGAAAAGAGTTTCTTTTTGGGGCAGTTCTGCT # Right flank : CAAACTCCATTCTTATTTCAGATTAAATAAATAAGTACCATCCCCGTAAGGGGGCAAAAACTCCGCGTCAAAAAAGATGCGGAGTTTTTCTTTTACAAAACTTAACTCTTTGGTTTCCGTGGGCTGTCCCTCTATGAACGGAACGATTGCAGCTGCTGTGATATTTTCTCTGCTGCGGCTTTTGCATAGCGACAAAATGTGTTATAATAAAGCCAATTCCAAGCATCTCTTACAAAATTGACAAACACGTTTTCCGTTTATTGTGCAATTCTTCCACAACCCGTAAAGGAGATGGTATTTTGAACGTTCTCACCCTGCAGTCCACCTATGGCGGGCTGCTGCACGACACCGGTAAAGCGGTGTACCGTGCCGGTGGGCAGCGCGGCAGCCACAGTGAACAGGGCTACCAGTTTTTGCACGGCGTTTTGCCCGGTGCAGGCTGGGCACCGGCGCTGGACTGTGTGCGCTACCACCACTCCGCCGCGCTGCGCGGTGCAGCA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAGCTTATCCCCGCAAGGGGACGATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //