Array 1 1449616-1447293 **** Predicted by CRISPRDetect 2.4 *** >NC_022997.1 Hyphomicrobium nitrativorans NL23, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================================ ================== 1449615 32 100.0 34 ................................ TCCGTTGCCATGCCGACCGAAACGTCAACGCTCA 1449549 32 100.0 34 ................................ GCGATCACCTGTTCCTGCTTCTCCGCGATCACAG 1449483 32 100.0 34 ................................ AAAAGTGCGCGGTGGAGCAAGGCCTAACGCTGGC 1449417 32 100.0 35 ................................ AGCACAATATCTGTCGGGATGAACGAGTCATGCCC 1449350 32 100.0 34 ................................ CGCGGTGATTTGCATCAAGCGCAATGGTGGCCGC 1449284 32 100.0 34 ................................ TCGCTGAGGCGAATGACGATGACGCGGAGTTCTG 1449218 32 100.0 34 ................................ GCGTCCGTCAGCGACTTGGCGTAATAGGCGCCCT 1449152 32 100.0 34 ................................ ATTGGCGAGGAAACACCGTAAAGGTTGCACTCTT 1449086 32 100.0 34 ................................ GCCGGGTCCGCATCGTCACCGCCGAAGACGTAAA 1449020 32 100.0 34 ................................ ATATCTCGCGCGCCGACCTGCCTGAGACCATCAA 1448954 32 100.0 33 ................................ TCAATCCCGGCAGTCTGTTCAGCAGATGCGTCC 1448889 32 100.0 34 ................................ TTTGCACGAGTGCGCCGCGCGGCATGAGCTGCTG 1448823 32 100.0 34 ................................ ATCGCAACGTTCGGGACGGTGCTGTTCGCGAAGG 1448757 32 100.0 33 ................................ CGCTGAATGTATCCGGGTGGGGTTTGGCCCGGC 1448692 32 100.0 35 ................................ GTGAAGAACGTGTCGGTGTCGATCAGGAGCAGCCG 1448625 32 100.0 35 ................................ TTCGCCCTCAGCTTGTCATCTGTGCCCGCGATCTG 1448558 32 100.0 33 ................................ TCCCACATCCTCCATCCCTCCCCGGAGGCCGTG 1448493 31 96.9 35 .......-........................ ACGACATCTTCGTCGAGGTCGTTGTAAATCTCCGG 1448427 32 100.0 34 ................................ GCAGCTGTTAGCTCCGGTCAGCGCTCCCGATCGT 1448361 32 100.0 34 ................................ GCCGCCCGATCCGGCCATGCCGAATATCACCCCA 1448295 32 100.0 34 ................................ TCCCAGACGGCTTCGAGCATCTGCCCCACGGTCT 1448229 32 96.9 34 ..........A..................... GCCGCCCTGCTGTGGCTCATACGATGAGCGACGC 1448163 32 100.0 12 ................................ CCAACTGAAAAG Deletion [1448120] 1448119 32 75.0 34 ..T.TTC.TTT.C................... TCAAGCTCCTTCGCCCACGGGGTTTTGCCCCTCG G [1448111] 1448052 32 100.0 33 ................................ ACATCGTCGAGCGGACTAGCGACGCAAACGTCA 1447987 32 100.0 96 ................................ TCTGTGGCGAGCAGCGTGACGTGGAACCCGAAGGTCGCCTCCGCGGAGGCGTGGATAGAAACTCCACATCGGCCTCGCCGGCAGCCTGCGGCGCAG 1447859 32 96.9 50 ...............................A CAGCAAGGGAAAAAACGCCATGAAAACGCCATGCTGAACCGCAAGGAGCG 1447777 32 100.0 35 ................................ TCGATCCCGCAGGCACCGTGCGTGCACCCATGCGA 1447710 32 93.8 32 ...A........A................... ATCATCTGCGACCTCAACGCGCCGGACGGACA 1447646 32 96.9 35 .........T...................... GAGAACATCCGCTCCGAGGGGATCGGGTATCCGCA 1447579 32 100.0 35 ................................ CGCATGCCGATTGCAGATGGTGATCACATTGGAGT 1447512 32 96.9 23 .......T........................ ATCGGCCTGTCCGCAACGCCATG Deletion [1447458] 1447457 32 100.0 35 ................................ ACCATCGTGCGCGAAAACACGCGCTGGACCGGCGA 1447390 32 96.9 34 ..............A................. ATTGAGCATGGCCGCCGCTTTGTGGGGGGCATTA 1447324 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================================================================================ ================== 35 32 98.6 35 GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC # Left flank : CCGGGAAAAATCGCCATGATGGTGCTTGTAACCTACGATGTGAGGACCAGCGAGCCAGGCGGTGAGCGCAGGTTGCGCCGCGTGGCAAAAGCCTGTCGTGATTTTGGTCAGCGTGTGCAGTATTCGGTCTTCGAGGTGGAGGTCGATCAGGCGCAGTGGATTAAGCTCAAGGCAAACTTGGAGGGCTTGATCGACCCGGCCCACGACAGCTTGCGCTATTACTTTCTTGGCACCAATTGGCAGCGGCGCGTGGAACATGTGGGCGCCAAACCTGCCGCAGACTTGAACGGTCCGCTCATCGTTTGACGCGCCTTTTTAAAGAGCGCGAACCGCAAGCATGCCCGCTACTCCAAGCAGGGTTCGCGCTGCTCTACCGCACTGTATTATCTTATAAATTTCCATCCCATCACAGATTAATTGGCTACACAGGAGCGCCCGACGCATAGTTCGCGGCGGCGAGGGATTTTGACAAACCAAACGAGTAAGTTACCTACACTAGC # Right flank : CGCGTGGCGCGGCTGTCGACCGCGGACACGTTGCGCGACAGCGTGGCCCGCCATTAAGCCCGATGCTTGTCGTTGCTCCAATCCGCTTCGTGGGCGGCGACATAGGCCTCCGCGCACGTCTTGAAGGTGATCAACTGGGCTTCGGCAATGCGGGCAGCCGCGCGTTTGGCGCTGCGCGCTTCTATGGAGTCTACATCCGCTGCAAGGCTCTCACGGCATTTTTGAGCGGCCACCCGAGCCGCTGCCAGCGACATCGCCGGGAGGACCCGAGGCCCATCTCGCGCGCTCGCTTCGCGTGAGTGAAACGGAACAGCCAACTCTTGCTGCCACTGTCCGTGACGCGGAGGTGCAGCCCACCGCCATCACAATGCTAGCCGGGCTTCCGGAGGTTCTGCACCTGAAGCGCCGTCAGCCTATTAGTCGTCCGGCTTGCTGGCGACCGGCCCTGCCCCCAGCCCACATTTGTGTACGTGACGTGGCTCGACGTGCGCCGACGCTCG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //