Array 1 29262-26734 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAASU010000027.1 Klebsiella pneumoniae strain 4502 4502_contig27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29261 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 29200 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 29139 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 29078 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 29016 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 28955 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 28894 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 28833 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 28772 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 28711 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 28650 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 28589 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 28528 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 28467 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 28406 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 28345 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 28284 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 28223 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 28162 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 28101 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 28040 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 27979 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 27918 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 27857 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 27796 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 27735 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 27674 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 27613 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 27552 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 27491 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 27430 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 27369 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 27308 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 27247 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 27186 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 27125 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 27064 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 27003 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 26942 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 26881 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 26820 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 26762 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27808-28627 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAASU010000175.1 Klebsiella pneumoniae strain 4502 4502_contig175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27808 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 27869 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 27930 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 27991 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 28052 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 28113 29 100.0 32 ............................. CAGGTTATACTGGCAAAACGTCGATGGCTCTC 28174 28 93.1 32 .....-.......T............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 28234 29 93.1 32 ............TC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG 28295 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAAATGGGACCTGTTC C [28306] 28357 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 28418 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 28478 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 28539 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 28600 28 89.7 0 ..........A...........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 95.3 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //