Array 1 87558-88440 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PJBI01000038.1 Halomonas sp. Choline-3u-9 contig7, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     87558	    29	 100.0	    32	.............................	CTATCAAAACCCGTTTCGGCATCAGCCCTGAT	
     87619	    29	 100.0	    32	.............................	GCAGACTTCATGCAAGCGAAATACATGCCATT	
     87680	    29	 100.0	    32	.............................	ACTGAGAGAGGAAGTCAAAGTTGTGCCAGAAA	
     87741	    29	 100.0	    32	.............................	GCAACAATGTCCGTTTCGCCTACCGCGCCCCG	
     87802	    29	 100.0	    32	.............................	CAGAGCAGCTACGCGTTGAGGAAGACGAAGCC	
     87863	    29	 100.0	    32	.............................	TCACGCTCGCCGCGCTCCCATAGGTTCATCAA	
     87924	    29	 100.0	    32	.............................	AGTGACCGTATCGGTCGCTGCTGCCGTTTCCC	
     87985	    29	 100.0	    32	.............................	ATTACGCCACCAAAGCCCCATGGAAGCTTGGG	
     88046	    29	  96.6	    32	.........................G...	CCTGACGGCTACGCCGACGACAAGATGCGTCG	
     88107	    29	 100.0	    32	.............................	GTGATTGAGAAGTCGCGCCGTATCGGCCTTTC	
     88168	    29	 100.0	    32	.............................	AATTATTATGGCTGCAGTGTTCACCACAATAT	
     88229	    29	 100.0	    32	.............................	CCTCCTTTCAAGTCAAGGTTGGTACGTACCGT	
     88290	    29	 100.0	    32	.............................	ATCTGAACGGCGTCCCAGTTTTCGGGCAGTAC	
     88351	    29	 100.0	    32	.............................	TCGTCGTTATCGTCATTTCCCCCGGTGCGTAG	
     88412	    29	  96.6	     0	..............A..............	|                               	
==========	======	======	======	=============================	================================	==================
        15	    29	  99.5	    32	CCGATCCCCGCACGGGCGGGGATGAACCG	                                	       

# Left flank :   GGCGATATTCAGCCGCCACCGCCAGCACCCGATGCGGTGCCGCCTGCGATTCCCGAACCACCTTCGGTTGGCGATGCTGGGCACAGGAGCGGATAAATGGCGATGCTCGTAGTGATTACAGAAGCCGTGCCGCCACGTCTGCGTGGCAGGTTGGCGGTATGGCTCTTGGAGATTCGAGCCGGTGTTTACGTTGGTGACGTTAGCAGGCGCATCCGCGAAATGATCTGGGAGCAGGTAGAAGCGTTAGCTGAAGATGGCAACGTAGCAATGGCCTGGGCCAGCAATCATGAATCCGGCTTTGAATTTCAAACCTATGGTGAAAACCGCCGAGAACCCGTCGACCATGACGGGCTACGCTTGGTGCGCTTTGTACCACCACAAGTTAACTAGCTGATTTTATTTGATCTTTAATAATTTAGCCTGATTAAAAAGTAAGCAAAATAGCTGGTAGATTTTTTATCTGCTATTTTCTTCTTGTAGATCAATTATCTACAACTAGT
# Right flank :  GTTCAAAGTGGCGTCAAAAAGATCATTTAGATGGTCGGGAGTTAGATTTAAAGTATGTGCCCTTGGCCGCTGCGCGGTGCTTTCGCGCCGGGCCGCCGTCGCGGGTGCGCTAACGCTTACGCCGCGCTACTCGAAATGTGCATGCCCCGGAATAGGTGGCAGAAGGTGTTGCCATATAGGCCGCTCATAAAGCATCGCCAGCGGCCAAGGCTTATTAAACTGTGTGCTCGTGGCACCGCTGCGCTTGAGGCTTATCACGCCTACTCGAAATGTGCATGAACCGTCATAAGTGGCGAGCATTGAGTCCTTCTGCCGGTTTCTGGTTGGCTAACTGCTATTAATGGCAAAGCCTACTTAGTTTTTGTGCGGCGTTGAGATATACTTATTTAGCTAGACGTCAAATTAAGCTATATCACTAACGTTAAAAGACATGGATCTTTCCCGCATGGACACTCATCACTTAGCGTCTGAACCGAAAAGCGTGGCCGCTCGTCAAGAGC

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCGATCCCCGCACGGGCGGGGATGAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CCGATCCCCGCACGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.60,-11.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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