Array 1 1185249-1184365 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039266.1 Lactobacillus crispatus strain DC21.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1185248 29 100.0 32 ............................. AGAGTTTACCAAGGTTCTGCACCAAGTGTATT 1185187 29 96.6 32 ............................C CACTTAAAATTAAACTATCTCTGAATTCTATT 1185126 29 100.0 33 ............................. ATCCACGATTACCTGCTGATTGCCTAAATTATC 1185064 29 100.0 32 ............................. ACGGCGGCACTACAATTGATAGCATCAACGTG 1185003 29 100.0 33 ............................. AAAATTTATCTCGGATTGCTTCCACTTAAAAGG 1184941 29 96.6 32 ............................C AGTAGGATAAGAACTAGTAAAATCAAAACTTG 1184880 29 100.0 32 ............................. ATTTGCTTCGGTGATTACGTGATTACCATTAA 1184819 29 96.6 32 ............................C AGACGATCTAGCCGGGCGCTTATTGTCTGAAT 1184758 29 100.0 32 ............................. GATTTTCCGGACATCATGAATTATTCGGGTCT 1184697 29 96.6 32 ............................C GAATGGACTTCAACTTTCTCAACTCGTTTGCA 1184636 29 100.0 32 ............................. AAAAAGAAGCCACCCAAAAATTTCTGGTCGCT 1184575 29 96.6 32 ............................C ATTACTGATGTCTGTAAAATCATAGTTCCTTG 1184514 29 100.0 32 ............................. AATATCATCAAGCTGGCTAATTACTGATTGTT 1184453 29 93.1 32 T...........................C CATCACAAAACATAGTGAAGCAGTTACACCCA 1184392 28 82.8 0 .............A.........-..TGC | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.3 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGGATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1208178-1207295 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039266.1 Lactobacillus crispatus strain DC21.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1208177 28 100.0 33 ............................ CTGGTTCATTTTTTGAAGTGTTATAGTCATAGT 1208116 28 100.0 33 ............................ CTTGGTGGTCTCAACTGTGGAAGATGGTTGAGG 1208055 28 100.0 33 ............................ TAATATTTATTGGTAAGAAACTCATCAAAAATA 1207994 28 100.0 33 ............................ CTGTGTCCCGGCATTTTTCCAACTAGTACCATG 1207933 28 100.0 33 ............................ TATAAATGATCGCGTGAATGAGACTTTGAAAAG 1207872 28 100.0 33 ............................ CCCGTGGACAGATAATCGTAAACTAGATATGAG 1207811 28 100.0 33 ............................ CGATTGAACCAGTATAACGGTTTAAATCTAAAT 1207750 28 100.0 33 ............................ TTGGTGGAGACATCGCAGACACAACACCACTTG 1207689 28 100.0 33 ............................ TACTTCTTGAACCTTTAAAAGATGTTGTGTCAT 1207628 28 100.0 33 ............................ TCACCGTTAACGGCACGGTTGATTCAGATACTA 1207567 28 100.0 33 ............................ TATTCCAAACATTACCAGGTACTTTCTTAGTGT 1207506 28 100.0 33 ............................ TAAGTGAACACTTGAACGGCTTTTAACTTTTGT 1207445 28 100.0 33 ............................ TCTGTTATCAACCTTGGAGATTTTATAAGTATG 1207384 28 100.0 33 ............................ TTATACCGTCTAATTTCGCTGAGGGTGCCGAAG 1207323 28 89.3 0 .................T......T.A. | A [1207302] ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.3 33 GTATTCTCCACACATGTGGAGGTGATCC # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACGTACACTATTGTAGCTCAGCAGTTTTACGATAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGACAGACAAATAATATTTTTCTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCTAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTTCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTACTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATAGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACACATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 1211473-1210904 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039266.1 Lactobacillus crispatus strain DC21.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1211472 29 100.0 32 ............................. ATAACCAGCAGAAATTGTATCTTCAATTTGTG 1211411 29 100.0 32 ............................. CATCTCCTCTCATGTGCATGTACTCAGAAATG 1211350 29 100.0 32 ............................. GGTGGGGCAGCTGGTCTAGGACAATGGCTTGA 1211289 29 96.6 32 ............................C CACTTAAAATTAAACTATCTCTGAATTCTATT 1211228 29 96.6 32 ............................C CTTGCCAACGTGGTTGGGGTTTGCATGAGTAA 1211167 29 100.0 32 ............................. GTATTAGCCTTTCTATCCCATGAGTTCACAAG 1211106 29 96.6 32 ............................C AGTTTAGGTACCATTTTTTGACGATCAAAATC 1211045 29 89.7 32 ............AG.........G..... AACAGCAGAAAGTGGGATGCATTGTGGAGCTA 1210984 29 96.6 22 .......................G..... TTACGTGACTGACTAAAAAACT Deletion [1210934] 1210933 29 72.4 0 .A.........AC..........A.ATAG | C [1210908] ========== ====== ====== ====== ============================= ================================ ================== 10 29 94.9 31 GTATTCTCCACGTATGTGGAGGTCATCCT # Left flank : GTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTAGT # Right flank : CTGCTCTGAAAAATATGTTCTATAGAGTGGCTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATGTGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCTTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAATAAAAAACCACAAATCAAAGTTTACTTCAAGT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTCATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1276815-1275321 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039266.1 Lactobacillus crispatus strain DC21.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1276814 29 96.6 32 ............................C GAATTTGGGGCTACAATCAAGCCTAAAAATGG 1276753 29 100.0 32 ............................. CTGAACTACGAATTCAATGCTGCCAGCTTCTA 1276692 29 100.0 32 ............................. AGCTGTCAATTGTTGCGTTATGAATTGCTACA 1276631 29 100.0 32 ............................. GATGTCACCTGTATATGGAATAATTGGTTTCT 1276570 29 96.6 32 ............................C ATCTATAGTCGACATTACTGACGACACTACTG 1276509 29 96.6 32 ............................C CGGTCTTCGACATATTGGTATCGAAATACCGT 1276448 29 96.6 32 ............................C TAACCATCTCTTCCAGCTTTGCAACAAAGTTT 1276387 29 100.0 32 ............................. ATCTAACAGTGATCATGCTAGTTTTGCCTTCT 1276326 29 100.0 32 ............................. ACGCTGCCACAATGATGCATTCTCAATCTTAT 1276265 29 100.0 32 ............................. TACTGGATTTTTGTAATTATACTTAATTTATA 1276204 29 100.0 32 ............................. CTTCTTGTAGTCTGCTACTTGAAGTTGACCGC 1276143 29 100.0 32 ............................. GTCGCTGCTTTCAAACTCAGAATTATCATCTT 1276082 29 100.0 32 ............................. TACTATCCTACAGGACTAAGTCCAACATGAAA 1276021 29 96.6 32 ............................C GCACTTGCTAAGTTTTTGTTATCAAAAGATGG 1275960 29 96.6 32 C............................ GCTACACATATTGCCAACATTCAAAATGGTTC 1275899 29 100.0 32 ............................. AATAAGAACGGCTCTTGGAACAATATCGGTGA 1275838 29 100.0 32 ............................. AATAAGAACGGCTCTTGGAACAATATCGGTGA 1275777 29 100.0 32 ............................. AGCCCTTTACCCGTTCAAAAATTGAACCTTTA 1275716 29 96.6 32 ............................C GAATCAAACGTTTGACCGACGAAGAACTGAAG 1275655 29 100.0 33 ............................. AAAGTAAGACCTGGTGTCTACATCAATGTTAAA 1275593 29 100.0 32 ............................. ATACCGGGCACTATGAAGGTAAAAAGTTTGTT 1275532 29 100.0 32 ............................. AACAACGATCGTGCCATATCCTTTTTGCCATT 1275471 29 100.0 32 ............................. TGTACTCTGATGTTAAAAACACCGCATAGAAT 1275410 29 96.6 33 ............................C CGGTCTTCGACATATTGGTATCGAAATACCGTG 1275348 28 86.2 0 ..............C.......C-...T. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AGCACTATTGAGTGATAAGAAGTTTGATCAAGCTGTTTTTTATCTGATGGATAATTTGAATTTATTAAAACAATCATTAAGCGCTGATATGGATTATAGTCAATTATTTGAAAAACTGCGAAAGTTAAATAAAAAAAATTAAAGGTATTTCTAAGCCTTTTCATTATATGCCTAAAAAAACACGTACTATCAATCAGGGAAGGAGAGCAATTAATGCCATAATTAGCAATATTATTGGTGCTGATTGTAAAAAATTACAAAATTTGCAAGATGAACAAATCTTTCAGATGTATCTTGAAGCTAAGCTGCTAAATCAAAATTAGATGAAGCTTAACGATGATCGGGGAGTTAGTCAACGAAGCAGAAAAAGAGAATCTTATTTTATTCAATTAACTTTGAATATCTAATTACATAAATTTTGAAAAGTGAGTCTTCTTAAAAGTGATTAAAAATGTTATGATTTGAATTAAGGATCATTGATATAGCGGGATTTGTTTAGT # Right flank : CCTCTTGTATCAATGGATTTTTCTAAAAATAAAAAATAGATAATCGATTAACTTAATCATTCTAAAAATCGTGCTTGATCTAACTTCCAAACATCGTTATACTAAAGAAAGTGTTGCATCGAGAATCCTTATTCACGATGCCCGATCAACAGAAATTTTAGCAAACCTCTTAAAGGCGACTCGCTTTTAGGAGGTTTTGTTTTTTTATTGCCAAACAAAAAAGATGACAAAAATGCTGTAATCATTCACAATAGGGAACAACAAATTGTTGAATTAGAGGATTTAATTATGAAAACAGTAAAGAATATTATTATCGGCTTTGGTAAAGGCGGCAAAACGCTAGCTAAATTTTTAGCGAAAAAGGGCGAAAAAGTCCTAGTCATTGAAAAATCTAATCAAATGTATGGTGGTACCTGCATTAATATTGCTTGTCTGCCATCTAAACGCTTAATTATCGAAGCGGGTAATGGCGTGGATTTCGTAGATGCAGTTAATGGCAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //