Array 1 1181791-1182568 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046640.1 Iocasia fonsfrigidae strain NS-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1181791 37 100.0 36 ..................................... GATAAGCTATTTCTGCCTGGTTAGAAGTCTCATATC 1181864 37 100.0 36 ..................................... GACACTATTAGAAGCAGATTACTAGCAGCCTTTTTC 1181937 37 100.0 37 ..................................... CAATAATAGTCATCTTGGATTTTTTCTAATTTTTTCA 1182011 37 100.0 38 ..................................... GCGTTGTGGAGTTGACCTCTCCGCAATGGAGGGCCACC 1182086 37 100.0 36 ..................................... TTACTGATTTGGCGGCTTATAACGAAGGGATACTAG 1182159 37 100.0 37 ..................................... GAAATTAATATCTTATCTTATTATTGGATGATATTAG 1182233 37 100.0 38 ..................................... ACCTCTATTTTCCTCATTTCCTCAAGCAATATATTTTT 1182308 37 97.3 38 ................T.................... ACCTCTATTTTCCTCATTTCCTCAAGCAATATATTTTT 1182383 37 97.3 38 ................T.................... ACCTCTATTTTCCTCATTTCCTCAAGCAATATATTTTT 1182458 37 97.3 37 ................T.................... ATTGATGTCTCTATACCCTCCGCTTCAGCCAACTTTT 1182532 37 91.9 0 ..................C................TG | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 98.5 37 GTTTAAATAATAAATCCATTATAAGAAGGATTGAAAC # Left flank : AGAGTTTATAGAAGCAAATATATAAAAGCTCCACAAGAAGATAAGATGAATTTTTATAAATCTGTAATCACTGGAAATATTCTCAGTTTTGCTAAAGGAATAGACTGGTGGGTTGAAGAAGAAATTAAAGTAGTACCATCTTTATCTGATATTACAGTAAAATTTAAAGGTGAAGAGATGCTAGGATTTACTGGCTATTTCTTCTCCAATGTATATTTACCAGAATATATAGGATTGGGTAAATCTACTAGTCGAGGGTTTGGTACAATTATAAGGGAAAAAGTAATTTAAAGAAACAATTCTGAAGGAAAATTATTGATGAATAAATATACAGTAGTCGATGATTGCAGTTATATTAGTATCTAGTTGGTGATTAAATTTTGCGGCAAAACTATCAAAACAGGGGTAAAATTTATAAATATACGGTAAAAAAAGAGAGGGTTATCTTCTCAAAAATTGCTGATGATTGCTGTTATATAAACAATCTTGCTCCGTGACGG # Right flank : GTAACATTAATTTTTGCTTTATGGACAAAACTAATATTTATAGTAAAAAATAACTAAAAAATAGAAAAAATCAAGAAAAAACAAGGAAATGATGCCCTCCTGTTGAAATATATGTTTAAAGTAAATATATAAAATAACAGGAGTGTAAAATGTGAAAGGTATATTATCTTATGGTTGCCGCTTTAATAAATTAGAAACAGAAATAACTATTAAGCCTCTAGATGATGATTTAGCAGGTTTTGAAACAACACTTAAAAAGGAATTTATCAGGAAGATTTTTTTTGATTACTATAGTAATATCTATGTTATTAAAGGTTATTATCCTAATAATGACGTTGATGAATGTTTTAAAGGAGTAGAACTAGAAAGATGGGCGAGTTTGAAAAATAGTCATAAAGATGCTGTAAAAAAAGTAAGGATCAGATGGGTTAGGGGAGAACATGTTGACAGAGAAATAAGTTTTAATGCATGTGCTATAAAATATAAAGAAGAAATAGATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATAATAAATCCATTATAAGAAGGATTGAAAC # Alternate repeat : GTTTAAATAATAAATCTATTATAAGAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 3094311-3094082 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046640.1 Iocasia fonsfrigidae strain NS-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3094310 29 100.0 37 ............................. GATAATTTAATGACGTGTACAGAAATAGCTAAGAGGA 3094244 29 100.0 38 ............................. TAATTTGAATAATATTGATTTTGATAGGAACCAACGAC 3094177 29 100.0 38 ............................. TATAGTTCAAAGATATTATGTTCTGAAAAAAGAAAAAG 3094110 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 99.2 38 GTTTTATATTAACTATGTGAGATGTAAAT # Left flank : AAACGCCTTGAACAAAGCAAACCAGTTCTGGAGGCCTTTTTGTCATGGCTAAAAATCAAGGAACAACAGACTTTACCTAAAAGTGGTCTCAGCAAAGCTATTAAATATTGTCTCAATCAATGGCCAAAACTAGAAGCCTTTCTCCTGGATGGTAGACTAGAGATCAGTAATAATCGGGCAGAAAGAGCAGTCAAGTCCTTTGTTATTGGGAGAAAGAACTTCCTATTTTCCAAGTCGGTAAAAGGAGCTACAGCCAGTGCCATTACTTACAGTATCATAGAGACCGCCAAAGCAAACAACTTAGTACCATTCTTTTATCTAAAATATCTTTTTGAGAAACTACCCAACATTGATCTACAAAATATAGATGAATTGGATGAATTATTACCTTGGTCTCAATCTATTCCGGAAGGATGCAGGATTCCTCATAAGAATTAGCCTATCATAATGTCCTCAATTTTTCCAGGTGGGGACGTTTTGACGCTTAAAATTTAAATATG # Right flank : GCATACATCTTCATCAAATCATGCAGAATTAAGGTTGTTTTTTTATTCAATTTAGCCATCTATTCTCACCATCCATAATATTGAATTTATATTATGAACAGTTTATACTATCTATATTAAAGGGTCAATTTTAATTTAACATAACACCTCTATGTAAATTGCGCATATTTTTATTTTTACATTAATATGACTTTGTAGATTATTGAAATACAATATATTATAGAGTTTTATTGCTAAACTGTTTATCCTTACCAAATCTAAAAATTAAATATCCTGCAATAATAATAAATCCATAGCCTATAAAACTAAGTAAATCTGGAATTTCTGAAAATATTAAAACACCCAAAAGACTAGAAAATATTACATTAGAATAATTATAAATAGATACTTCTCCTGCCGGAGCATATTTATATGCATAAGTAAGAGCAAATTGTCCTAATGCTGCAGTAATTCCTGCTAATATAAGAAATATTAGCTGCTTAAAATTAGGCATAATAAAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGAGATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 3098408-3096851 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046640.1 Iocasia fonsfrigidae strain NS-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3098407 29 100.0 39 ............................. GAAAACCATGCTATTATTCCTTTCACTTTCTCGGTCAGA 3098339 29 100.0 37 ............................. TTTTCTGAACTTCATCACCAGCTGCAGCAGTTTTTTC 3098273 29 100.0 36 ............................. TTATATCTGTGACAGTTCTAGTCTTTTCCCCTGTAT 3098208 29 100.0 37 ............................. GCGGAAATTCTATATCATAAGTATTCTGCGTGACCCC 3098142 29 100.0 38 ............................. AATACAGCCATTTCATCATTGACTTGCTGTAATTTTTC 3098075 29 100.0 38 ............................. TCCTAAATTTGTAACTCAATGGTTTATTGAAGTTCAGA 3098008 29 100.0 38 ............................. GAGTTCCTCGAAGCAATCAAAGCAGGCAGGCGAAATTT 3097941 29 100.0 39 ............................. GTTGGCAATGTCCATCTATGCTTAGAACCGTTGTATTCT 3097873 29 100.0 37 ............................. TTAATTTAGCATACTCAATAAACAAATCTTTAGGCAA 3097807 29 100.0 38 ............................. CCAGTTAAACCTAAAGGTTGTTCAGGAATCGGTAAATT 3097740 29 100.0 38 ............................. GGTGTTAGATTAGAATATAATACTGTTTTTGTAGGAGT 3097673 29 100.0 37 ............................. GAACGCCTTAAGGATATTAACGGTAATATAGTAGGTG 3097607 29 100.0 38 ............................. AAACCTACCATTAAAGTAAATAAAATTTCATTAAGAGC 3097540 29 100.0 37 ............................. TGTTGTTTTATTCTCCTTTTGTTCAGATATATATTAT 3097474 29 100.0 38 ............................. ACGTGAACTTTATCCACATCTGACCATTCAGTTTCTTT 3097407 29 100.0 38 ............................. TTGAGACTTCAGAAAATATTAGGTCATAAGACCTTAGA 3097340 29 100.0 36 ............................. TAATTTTGTATACGTCCTTGTTAATATGCCATTTTG 3097275 29 100.0 36 ............................. AACATCATGCCTTCTTCTATGCTCTGTTCTATTTTC 3097210 29 100.0 37 ............................. TAGTTATCTTCTCAAATTGTTGTTCGGGGGATAGCCC 3097144 29 100.0 36 ............................. GAAACTAAATCTTGATTAGAAAGGACACTTCCAACA 3097079 29 100.0 38 ............................. GTGCCAGAATAATTCTTGATTAACATTATAGCCTCTTG 3097012 29 100.0 36 ............................. GGTTTTTCTAACAAACGTAAGAACTGGTTTTAAATA 3096947 29 100.0 39 ............................. TAGGAATGGAAGTTGTTGACAACAAGCCTGTAGTATTAC 3096879 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ======================================= ================== 24 29 99.9 37 GTTTTATATTAACTATGTGAGATGTAAAT # Left flank : CCTTTAAAGGCCTGGTGGTAATATGTTTGTAATTTTGACATATGATGTTGATGTCAAAAGGGTTAATAAAATAAGGAAGTTGTTAAAGAAATATTTAACCTGGACACAAAATTCTGTATTTGAGGGAGAAATTAGTCAAGGTAAATTGAATCAGTGTTTATCTGAAGTTGAAAATATAATTGATAAAAGCTATGATTCAATATATATCTATAATGTTAAGAGTAGTAAATTTATTTCTAAAGATATTTTGGGAGAAAATAAGAATTTTGACGAATTATTTTTGTAAAAATATTTAAAATATAGAAATAAATTTAGGGTTTTGCAGTAAAGCTATTTTAAAGTGAAATTTAGATGGAATGGCATGGTTACTGGGTTGAAAAGAAGAATATTTTGTATTATAATTACATTACTGATGGTTTACTGCAAAATTTATTTATTAATTATCTAGATGATGTTATGAAAGCTGATATGATAAGGTGGAGTCTGTAATAAATATTGGG # Right flank : GTTCTACTCCTAGCTCTGTAATTTCATGCGTATTCCTGTGTTTTATATGTAAGCGTCAAATATAACCCACATTCCTTACAGCCGAAATCTATGAGATAATTTCCCTGAGGGAGGTTATTTGAAGATGAATAACAAACGTGAAATCTGGATTGAAAGAATCCAGGATTACAAAGCAAGTAGTTTAACTGCTGCCAAATGGTGTGAAGAAAATGGTCTAAACATTAATTCTCTAAGATACTATATTCATAAATTTGAAAGAACAGGAATCTAGTCAAACTAAATGGACAGCTGTATTTCCTGCCCGAGCAGAAGATACCAATTCTGAAACTAAAACCATAAAAATAACTATAGGCCAGGCGATCATAGAGGTCGTTCCAGGTTTTGATTCTAATACTTTTGAAACTCTTATCAGGATTCTTAAAGAACAATGTTAAATCAGCATCATATCAATAAAGTATATTTATCCCTGGGGCCTACAGATCTTAGGAAATCAATCAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGAGATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //