Array 1 168654-169049 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SEWQ01000010.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 219_14 NODE_10_length_169091_cov_40.1254_ID_19, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    168654	    29	 100.0	    32	.............................	TTCCAGAACCGTTTGACTTACTGTGGCCATTA 	
    168715	    29	 100.0	    32	.............................	GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 	
    168776	    29	 100.0	    32	.............................	CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 	
    168837	    29	 100.0	    33	.............................	TTTTGATACCGTAGTATTCATTACGCCTCCTAG	
    168899	    29	 100.0	    32	.............................	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 	
    168960	    29	 100.0	    32	.............................	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 	
    169021	    29	 100.0	     0	.............................	|                                	
==========	======	======	======	=============================	=================================	==================
         7	    29	 100.0	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT
# Right flank :  AAAAAACAGAAGAACGGCAAGCGGCACCTCAAGTGTTCCCCG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.51,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 1 7-703 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SEWQ01000028.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 219_14 NODE_28_length_59138_cov_37.7771_ID_55, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
         7	    29	 100.0	    32	.............................	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC	
        68	    28	  96.6	    31	....-........................	AACAGGAACAGGAAAAAAAGATTTGTCCGGT 	
       127	    29	 100.0	    32	.............................	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT	
       188	    29	 100.0	    32	.............................	CGGAGGATGGAATATTTCCGAGGCTGGCGATT	
       249	    29	  96.6	    32	.............T...............	ATGCCGGAACGCTGATGGCGTTTGACATGAGC	
       310	    29	 100.0	    32	.............................	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT	
       371	    29	 100.0	    32	.............................	TGACGCTGGTCTATACCGGCAACGAACGCGAC	
       432	    29	 100.0	    32	.............................	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA	
       493	    29	 100.0	    32	.............................	CAGGTTATGCGCAAAAATTAATTCATATTATA	
       554	    29	  96.6	    32	.................A...........	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA	
       615	    29	 100.0	    32	.............................	CGTTCATCGGCAGCGTCACGCAATATGAAGAT	
       676	    28	  82.8	     0	...............A.AA....-.G...	|                               	
==========	======	======	======	=============================	================================	==================
        12	    29	  97.7	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CCTCAAG
# Right flank :  GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG

# Questionable array : NO	 Score: 6.15
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [4-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [5.0-63.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.65,0.27   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 2 16960-18623 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SEWQ01000028.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 219_14 NODE_28_length_59138_cov_37.7771_ID_55, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	=============================	======================================	==================
     16960	    29	 100.0	    32	.............................	GGGAAAAATCAATAAAATCAATGATAAGCAGT      	
     17021	    29	 100.0	    32	.............................	GCTGGGTAGTGGAGTAATCATTATGTGTGGTG      	
     17082	    29	 100.0	    32	.............................	CAGTGAGATGCCGCCAATTTGTCAAATAAAAT      	
     17143	    29	 100.0	    38	.............................	CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA	
     17210	    29	 100.0	    32	.............................	CCTTTAATCGCCTCTTATCGCCTGGATTGGTT      	
     17271	    29	 100.0	    32	.............................	TTAAATCCATATACGGGCCTTGCGGGTTTGCC      	
     17332	    29	 100.0	    32	.............................	GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT      	
     17393	    29	 100.0	    32	.............................	GCGCGCCAATAATTTTATTGACGATTTCATCA      	
     17454	    29	 100.0	    32	.............................	CCGCTGACGCACTGGATCAACCTGACGCAACG      	
     17515	    29	 100.0	    32	.............................	TTGCAGGGCGATATTGTTGTTGGTGAATGGGA      	
     17576	    29	 100.0	    32	.............................	CGTCGCGGAAAATTTCGCATTGACGATAAAGA      	
     17637	    29	 100.0	    32	.............................	TTACGTGTTTATTCATCTGTTGCATTAGATTC      	
     17698	    29	  96.6	    32	............................T	GAGGCGTACAGGCTGTTAGATGAGAAATTACC      	
     17759	    29	 100.0	    32	.............................	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC      	
     17820	    29	  96.6	    32	......T......................	GTTTGCCGTATCTTCGATCATACCGGAACGGT      	
     17881	    29	 100.0	    32	.............................	TGGATTATCTGTATTTTACGGAAGTGGGCGCG      	
     17942	    29	 100.0	    32	.............................	GTCGTTCATCAGGCACTACCGGCACTTTCTGG      	
     18003	    29	 100.0	    32	.............................	ATATTCGCCGCTTTCCATTTACCGAACGTAAC      	
     18064	    29	 100.0	    32	.............................	AATAAGGCGCGGTGCCACCCTCGGCTTTAATT      	
     18125	    29	  65.5	    13	..............GA..C.TTCC.G.GC	ACGTTACTCGATC                         	Deletion [18167]
     18167	    29	 100.0	    32	.............................	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT      	
     18228	    29	 100.0	    32	.............................	TTCTTGAATATGATTGCGGGTATATGTGGATA      	
     18289	    29	 100.0	    32	.............................	TCTGGTTATAACATCGCAGCAAAATCAAAAGA      	
     18350	    29	 100.0	    32	.............................	GCAACCCATTAATTAACTAAGCAGTAATAAAC      	
     18411	    29	 100.0	    32	.............................	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA      	
     18472	    29	  96.6	    32	.....T.......................	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC      	
     18533	    29	 100.0	    32	.............................	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA      	
     18594	    29	  96.6	     0	A............................	|                                     	A [18620]
==========	======	======	======	=============================	======================================	==================
        28	    29	  98.3	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                      	       

# Left flank :   GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank :  GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG

# Questionable array : NO	 Score: 6.11
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-13] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//