Array 1 168654-169049 **** Predicted by CRISPRDetect 2.4 ***
>NZ_SEWQ01000010.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 219_14 NODE_10_length_169091_cov_40.1254_ID_19, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
168654 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA
168715 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA
168776 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC
168837 29 100.0 33 ............................. TTTTGATACCGTAGTATTCATTACGCCTCCTAG
168899 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
168960 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
169021 29 100.0 0 ............................. |
========== ====== ====== ====== ============================= ================================= ==================
7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT
# Right flank : AAAAAACAGAAGAACGGCAAGCGGCACCTCAAGTGTTCCCCG
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.51,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 1 7-703 **** Predicted by CRISPRDetect 2.4 ***
>NZ_SEWQ01000028.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 219_14 NODE_28_length_59138_cov_37.7771_ID_55, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
7 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
68 28 96.6 31 ....-........................ AACAGGAACAGGAAAAAAAGATTTGTCCGGT
127 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
188 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT
249 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC
310 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
371 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC
432 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
493 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA
554 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
615 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT
676 28 82.8 0 ...............A.AA....-.G... |
========== ====== ====== ====== ============================= ================================ ==================
12 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : CCTCAAG
# Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG
# Questionable array : NO Score: 6.15
# Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [5.0-63.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0.27 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 16960-18623 **** Predicted by CRISPRDetect 2.4 ***
>NZ_SEWQ01000028.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 219_14 NODE_28_length_59138_cov_37.7771_ID_55, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ====================================== ==================
16960 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT
17021 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG
17082 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT
17143 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA
17210 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT
17271 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC
17332 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT
17393 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA
17454 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG
17515 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA
17576 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA
17637 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC
17698 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC
17759 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
17820 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT
17881 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG
17942 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG
18003 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC
18064 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT
18125 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [18167]
18167 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
18228 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA
18289 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA
18350 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC
18411 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
18472 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
18533 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
18594 29 96.6 0 A............................ | A [18620]
========== ====== ====== ====== ============================= ====================================== ==================
28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG
# Questionable array : NO Score: 6.11
# Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//